Wall clock time and date at job start Mon Mar 30 2020 02:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86808 * 120.00154 * 2 1 4 4 H 1.48498 * 109.46786 * 269.99737 * 3 2 1 5 5 H 1.48499 * 109.46914 * 29.99381 * 3 2 1 6 6 H 1.48499 * 109.47155 * 149.99628 * 3 2 1 7 7 C 1.37884 * 120.00389 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99137 * 0.02562 * 7 2 1 9 9 C 1.50692 * 120.00101 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.46748 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.45602 * 54.95996 * 10 9 7 12 12 C 1.53138 * 109.45539 * 174.87783 * 10 9 7 13 13 C 1.53479 * 109.19131 * 189.22614 * 12 10 9 14 14 C 1.50706 * 108.16352 * 311.62462 * 13 12 10 15 15 N 1.30297 * 128.51407 * 195.71031 * 14 13 12 16 16 N 1.29130 * 107.74493 * 179.97438 * 15 14 13 17 17 N 1.29005 * 109.46214 * 0.02562 * 16 15 14 18 18 N 1.28425 * 108.66423 * 0.03486 * 17 16 15 19 19 C 1.46471 * 128.29360 * 179.90705 * 18 17 16 20 20 H 0.97005 * 119.99822 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.47102 * 60.00650 * 9 7 2 22 22 H 1.08994 * 109.47667 * 299.99706 * 9 7 2 23 23 H 1.09001 * 109.50797 * 69.31660 * 12 10 9 24 24 H 1.09000 * 109.52367 * 309.14000 * 12 10 9 25 25 H 1.08992 * 109.72692 * 191.96038 * 13 12 10 26 26 H 1.08994 * 109.72226 * 71.29172 * 13 12 10 27 27 H 1.08996 * 109.58279 * 317.11375 * 19 18 17 28 28 H 1.09004 * 109.58313 * 77.38365 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6365 0.0023 11 1 3.5865 -3.1761 -0.8390 12 6 5.5475 -2.6381 -0.1260 13 6 6.0329 -4.0758 -0.3563 14 6 5.3714 -4.9643 0.6655 15 7 5.6935 -6.1773 1.0160 16 7 4.8592 -6.5590 1.9247 17 7 4.0140 -5.6125 2.1572 18 7 4.2963 -4.6143 1.4001 19 6 3.6144 -3.3211 1.3112 20 1 -0.4850 0.8401 -0.0004 21 1 3.8745 -0.6800 0.8912 22 1 3.8753 -0.6804 -0.8888 23 1 5.9902 -2.2465 0.7898 24 1 5.8428 -2.0146 -0.9699 25 1 7.1154 -4.1220 -0.2381 26 1 5.7577 -4.4007 -1.3596 27 1 2.5355 -3.4754 1.3231 28 1 3.9035 -2.6968 2.1567 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261240485.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:06 Heat of formation + Delta-G solvation = 97.310089 kcal Electronic energy + Delta-G solvation = -13503.668792 eV Core-core repulsion = 11170.658162 eV Total energy + Delta-G solvation = -2333.010630 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -44.00446 -37.89304 -34.38696 -33.48588 -31.79319 -30.35457 -27.89245 -24.86669 -23.41486 -23.10904 -21.18851 -19.53542 -17.23828 -16.99732 -16.56638 -15.38087 -14.57137 -14.21585 -14.01599 -13.46102 -12.93264 -12.66477 -12.50179 -11.92164 -11.77737 -11.53753 -11.18315 -10.97603 -10.91940 -10.57473 -10.31368 -10.04684 -9.86944 -9.68281 -9.40383 -8.75140 -6.24778 -4.26896 1.55822 2.36616 2.45818 3.16027 3.24607 3.25663 4.09459 4.25750 4.39126 4.75044 4.81623 5.09693 5.28262 5.33356 5.42539 5.56118 5.67893 5.75423 5.82079 6.03381 6.10112 6.20711 6.31723 6.56809 6.86065 7.00829 7.50497 8.25973 8.76172 8.87691 9.35451 10.87765 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.055825 B = 0.008356 C = 0.007586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.449816 B = 3349.992289 C = 3690.216640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.879 3.121 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.536 4.536 8 H 0.074 0.926 9 C -0.003 4.003 10 C -0.088 4.088 11 H 0.082 0.918 12 C -0.129 4.129 13 C -0.038 4.038 14 C 0.180 3.820 15 N -0.313 5.313 16 N -0.097 5.097 17 N -0.094 5.094 18 N -0.293 5.293 19 C 0.121 3.879 20 H 0.266 0.734 21 H 0.023 0.977 22 H 0.027 0.973 23 H 0.070 0.930 24 H 0.090 0.910 25 H 0.101 0.899 26 H 0.101 0.899 27 H 0.121 0.879 28 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.687 -2.236 -0.796 10.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.130 4.130 3 Si 0.706 3.294 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.574 4.574 8 H 0.092 0.908 9 C -0.041 4.041 10 C -0.107 4.107 11 H 0.101 0.899 12 C -0.167 4.167 13 C -0.078 4.078 14 C -0.098 4.098 15 N -0.162 5.162 16 N -0.090 5.090 17 N -0.080 5.080 18 N -0.096 5.096 19 C 0.002 3.998 20 H 0.076 0.924 21 H 0.042 0.958 22 H 0.046 0.954 23 H 0.089 0.911 24 H 0.109 0.891 25 H 0.120 0.880 26 H 0.119 0.881 27 H 0.140 0.860 28 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 10.329 -3.324 -0.004 10.850 hybrid contribution 0.146 1.786 -0.385 1.833 sum 10.474 -1.538 -0.389 10.594 Atomic orbital electron populations 1.69899 1.06386 1.27271 1.49684 1.25015 0.94707 0.99239 0.94084 0.86804 0.80331 0.83632 0.78668 1.20131 1.21251 1.18918 1.21064 0.88990 0.94681 1.52642 0.90790 1.19590 0.97642 0.89300 0.97558 1.21534 0.93853 1.00399 0.94956 0.89936 1.21952 0.96486 0.94506 1.03767 1.20406 1.00306 0.92121 0.94956 1.25928 0.90609 0.94161 0.99113 1.74702 1.21839 1.08679 1.11020 1.78724 1.00287 1.19048 1.10948 1.78699 1.21184 0.93030 1.15123 1.48846 1.21298 1.14751 1.24737 1.22710 0.99529 0.76032 1.01532 0.92415 0.95840 0.95440 0.91131 0.89118 0.88042 0.88086 0.86044 0.87899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.58 13.96 55.43 0.77 -24.81 15 2 C 0.07 1.91 5.47 -17.82 -0.10 1.81 15 3 Si 0.88 19.53 27.47 -169.99 -4.67 14.86 15 4 H -0.28 -6.06 7.11 56.52 0.40 -5.66 15 5 H -0.29 -6.48 7.11 56.52 0.40 -6.08 15 6 H -0.26 -5.52 6.54 56.52 0.37 -5.15 15 7 C -0.54 -13.21 9.08 -34.44 -0.31 -13.52 15 8 H 0.07 1.97 7.34 -52.48 -0.39 1.59 15 9 C 0.00 -0.06 3.50 -27.89 -0.10 -0.15 15 10 C -0.09 -1.36 2.14 -90.43 -0.19 -1.55 15 11 H 0.08 1.33 8.12 -51.93 -0.42 0.91 15 12 C -0.13 -1.52 5.27 -26.41 -0.14 -1.66 15 13 C -0.04 -0.42 6.33 -27.63 -0.17 -0.60 15 14 C 0.18 2.80 7.83 -156.11 -1.22 1.57 15 15 N -0.31 -5.55 12.35 32.58 0.40 -5.14 15 16 N -0.10 -1.85 13.44 60.33 0.81 -1.04 15 17 N -0.09 -1.76 13.35 60.35 0.81 -0.96 15 18 N -0.29 -4.90 3.76 -58.36 -0.22 -5.12 15 19 C 0.12 1.93 6.17 -3.94 -0.02 1.90 15 20 H 0.27 7.16 8.31 -40.82 -0.34 6.82 15 21 H 0.02 0.45 7.19 -51.93 -0.37 0.08 15 22 H 0.03 0.52 7.55 -51.93 -0.39 0.13 15 23 H 0.07 0.80 8.13 -51.93 -0.42 0.38 15 24 H 0.09 0.93 8.11 -51.93 -0.42 0.51 15 25 H 0.10 0.92 8.14 -51.93 -0.42 0.50 15 26 H 0.10 1.00 8.14 -51.93 -0.42 0.58 15 27 H 0.12 2.11 7.27 -51.93 -0.38 1.73 15 28 H 0.10 1.53 8.11 -51.93 -0.42 1.10 15 LS Contribution 237.27 15.07 3.58 3.58 Total: -1.00 -29.38 237.27 -4.01 -33.39 By element: Atomic # 1 Polarization: 0.66 SS G_CDS: -3.23 Total: -2.57 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: -2.26 Total: -12.20 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 2.57 Total: -37.07 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -4.67 Total: 14.86 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -29.38 -4.01 -33.39 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261240485.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.703 kcal (2) G-P(sol) polarization free energy of solvation -29.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds