Wall clock time and date at job start Mon Mar 30 2020 02:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30788 * 1 3 3 Si 1.86803 * 119.99935 * 2 1 4 4 H 1.48505 * 109.46996 * 85.01590 * 3 2 1 5 5 H 1.48498 * 109.47294 * 205.01386 * 3 2 1 6 6 H 1.48497 * 109.47299 * 325.01766 * 3 2 1 7 7 C 1.40128 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99595 * 186.45406 * 7 2 1 9 9 C 1.39814 * 119.99882 * 6.44560 * 7 2 1 10 10 N 1.33064 * 126.57434 * 5.85601 * 9 7 2 11 11 N 1.28516 * 109.70810 * 179.81617 * 10 9 7 12 12 C 1.32316 * 110.20338 * 0.45351 * 11 10 9 13 13 N 1.37452 * 126.23833 * 179.68903 * 12 11 10 14 14 C 1.48538 * 110.99841 * 242.64413 * 13 12 11 15 15 C 1.54932 * 103.22619 * 159.72250 * 14 13 12 16 16 C 1.54593 * 102.92227 * 322.58646 * 15 14 13 17 17 C 1.47896 * 111.00184 * 0.03948 * 13 12 11 18 18 N 1.36485 * 107.52065 * 359.72582 * 12 11 10 19 19 H 0.96993 * 127.14780 * 179.97438 * 18 12 11 20 20 H 0.97003 * 120.00303 * 0.02562 * 1 2 3 21 21 H 1.09005 * 110.66518 * 278.15847 * 14 13 12 22 22 H 1.08998 * 110.66558 * 41.28459 * 14 13 12 23 23 H 1.09006 * 110.71978 * 204.22668 * 15 14 13 24 24 H 1.09001 * 110.87718 * 81.01696 * 15 14 13 25 25 H 1.09005 * 110.31009 * 263.04001 * 16 15 14 26 26 H 1.09005 * 110.30721 * 140.87677 * 16 15 14 27 27 H 1.09002 * 109.91752 * 333.50891 * 17 13 12 28 28 H 1.09004 * 109.91448 * 94.80564 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2419 1.6178 0.0000 4 1 2.3840 2.1073 1.3948 5 1 3.5881 1.4121 -0.5920 6 1 1.4960 2.6200 -0.8027 7 6 2.0085 -1.2135 -0.0005 8 1 3.0834 -1.2165 0.1046 9 6 1.3161 -2.4205 -0.1370 10 7 0.0163 -2.5655 -0.3822 11 7 -0.2756 -3.8154 -0.4475 12 6 0.8062 -4.5487 -0.2407 13 7 0.8675 -5.9218 -0.2316 14 6 1.2834 -6.4272 1.1018 15 6 0.7974 -7.8983 1.0907 16 6 -0.5474 -7.8124 0.3331 17 6 -0.4631 -6.5135 -0.4899 18 7 1.8498 -3.6930 -0.0372 19 1 2.7739 -3.9282 0.1408 20 1 -0.4851 0.8400 -0.0004 21 1 2.3671 -6.3808 1.2099 22 1 0.7922 -5.8657 1.8964 23 1 0.6451 -8.2618 2.1071 24 1 1.5014 -8.5359 0.5560 25 1 -1.3765 -7.7600 1.0388 26 1 -0.6652 -8.6717 -0.3271 27 1 -1.2445 -5.8224 -0.1739 28 1 -0.5696 -6.7387 -1.5510 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261240491.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:34 Heat of formation + Delta-G solvation = 75.247500 kcal Electronic energy + Delta-G solvation = -13430.774444 eV Core-core repulsion = 11096.807108 eV Total energy + Delta-G solvation = -2333.967336 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.71141 -38.15931 -33.60311 -32.03165 -31.39534 -28.57952 -28.15690 -25.04277 -22.10944 -21.14809 -20.35486 -19.44553 -17.67333 -16.34208 -15.54455 -15.38005 -14.51092 -14.20914 -13.49986 -13.15805 -12.74350 -12.16524 -11.93785 -11.39187 -11.22764 -11.18821 -11.00534 -10.94821 -10.40201 -10.36703 -9.59894 -9.51090 -9.06429 -8.86525 -8.20168 -7.12468 -6.58138 -4.48128 2.97496 3.10850 3.14951 3.43233 3.86450 4.07178 4.47081 4.82004 4.93082 5.01347 5.33122 5.43123 5.61057 5.69590 5.91218 5.93580 6.00010 6.22203 6.32334 6.38657 6.65705 6.93325 7.22790 7.26713 7.45112 7.64279 8.28286 8.42861 8.82321 9.11374 10.35947 10.80157 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.085497 B = 0.007528 C = 0.007134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 327.418725 B = 3718.620560 C = 3923.703862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.742 5.742 2 C 0.081 3.919 3 Si 0.919 3.081 4 H -0.271 1.271 5 H -0.263 1.263 6 H -0.275 1.275 7 C -0.455 4.455 8 H 0.082 0.918 9 C 0.342 3.658 10 N -0.337 5.337 11 N -0.318 5.318 12 C 0.230 3.770 13 N -0.430 5.430 14 C 0.036 3.964 15 C -0.121 4.121 16 C -0.131 4.131 17 C 0.051 3.949 18 N -0.635 5.635 19 H 0.403 0.597 20 H 0.278 0.722 21 H 0.076 0.924 22 H 0.048 0.952 23 H 0.069 0.931 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.196 -8.940 2.514 9.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.366 5.366 2 C -0.144 4.144 3 Si 0.743 3.257 4 H -0.196 1.196 5 H -0.187 1.187 6 H -0.200 1.200 7 C -0.496 4.496 8 H 0.100 0.900 9 C 0.096 3.904 10 N -0.184 5.184 11 N -0.164 5.164 12 C -0.126 4.126 13 N -0.154 5.154 14 C -0.092 4.092 15 C -0.159 4.159 16 C -0.169 4.169 17 C -0.076 4.076 18 N -0.257 5.257 19 H 0.239 0.761 20 H 0.089 0.911 21 H 0.094 0.906 22 H 0.066 0.934 23 H 0.088 0.912 24 H 0.091 0.909 25 H 0.085 0.915 26 H 0.089 0.911 27 H 0.093 0.907 28 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.689 -8.590 1.783 8.934 hybrid contribution 1.830 0.533 0.892 2.104 sum 3.518 -8.056 2.675 9.189 Atomic orbital electron populations 1.69985 1.07067 1.28507 1.31040 1.25743 0.94833 1.00557 0.93275 0.86143 0.80168 0.80532 0.78855 1.19632 1.18676 1.19992 1.18047 0.94295 0.87463 1.49771 0.89966 1.21406 0.90192 0.83222 0.95564 1.75437 1.09643 1.04586 1.28720 1.74401 1.22016 1.00526 1.19506 1.21825 0.86876 0.88355 1.15496 1.61222 1.26424 1.01550 1.26194 1.23322 1.00647 0.94823 0.90448 1.22447 0.97128 0.96116 1.00195 1.22437 0.97566 0.97949 0.98948 1.22700 0.89778 0.94637 1.00530 1.43810 1.09987 1.07071 1.64783 0.76088 0.91115 0.90553 0.93351 0.91215 0.90864 0.91479 0.91142 0.90718 0.90448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.73 12.00 55.56 0.67 -20.06 15 2 C 0.08 2.10 5.49 -17.29 -0.09 2.00 15 3 Si 0.92 18.85 29.57 -169.99 -5.03 13.83 15 4 H -0.27 -5.43 7.11 56.52 0.40 -5.02 15 5 H -0.26 -5.25 7.11 56.52 0.40 -4.85 15 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 15 7 C -0.46 -12.25 9.44 -38.28 -0.36 -12.61 15 8 H 0.08 2.01 7.86 -52.49 -0.41 1.60 15 9 C 0.34 9.66 7.70 -154.82 -1.19 8.46 15 10 N -0.34 -10.29 10.56 31.26 0.33 -9.96 15 11 N -0.32 -8.90 10.67 30.28 0.32 -8.58 15 12 C 0.23 5.59 7.27 -319.06 -2.32 3.27 15 13 N -0.43 -8.40 5.33 -170.60 -0.91 -9.31 15 14 C 0.04 0.57 6.48 -1.90 -0.01 0.56 15 15 C -0.12 -1.49 7.06 -24.87 -0.18 -1.67 15 16 C -0.13 -1.70 6.93 -25.38 -0.18 -1.87 15 17 C 0.05 0.90 6.45 -2.76 -0.02 0.88 15 18 N -0.63 -15.31 6.37 -12.50 -0.08 -15.39 15 19 H 0.40 8.21 8.96 -40.82 -0.37 7.84 15 20 H 0.28 7.01 8.30 -40.82 -0.34 6.67 15 21 H 0.08 1.12 8.14 -51.93 -0.42 0.70 15 22 H 0.05 0.85 7.99 -51.93 -0.42 0.44 15 23 H 0.07 0.73 8.14 -51.93 -0.42 0.31 15 24 H 0.07 0.83 8.14 -51.93 -0.42 0.40 15 25 H 0.07 0.82 8.14 -51.93 -0.42 0.39 15 26 H 0.07 0.77 8.14 -51.93 -0.42 0.35 15 27 H 0.07 1.50 6.81 -51.93 -0.35 1.14 15 28 H 0.08 1.30 8.14 -51.93 -0.42 0.88 15 LS Contribution 241.41 15.07 3.64 3.64 Total: -1.00 -32.50 241.41 -8.62 -41.12 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: -3.22 Total: 5.70 kcal Atomic # 6 Polarization: 3.37 SS G_CDS: -4.35 Total: -0.98 kcal Atomic # 7 Polarization: -63.63 SS G_CDS: 0.33 Total: -63.30 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -32.50 -8.62 -41.12 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261240491.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.369 kcal (2) G-P(sol) polarization free energy of solvation -32.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds