Wall clock time and date at job start Mon Mar 30 2020 02:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 N 1.30729 * 126.47437 * 90.02697 * 10 9 7 12 12 N 1.28996 * 110.12924 * 179.90045 * 11 10 9 13 13 C 1.30013 * 109.58867 * 359.95435 * 12 11 10 14 14 N 1.35665 * 126.46920 * 269.70478 * 10 9 7 15 15 C 1.46156 * 129.97872 * 0.98454 * 14 10 9 16 16 C 1.53392 * 108.83825 * 160.50614 * 15 14 10 17 17 C 1.53260 * 109.86672 * 49.16107 * 16 15 14 18 18 N 1.38991 * 130.48619 * 180.16270 * 13 12 11 19 19 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 21 21 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 22 22 H 1.08997 * 109.72610 * 40.60029 * 15 14 10 23 23 H 1.08991 * 109.49420 * 280.28224 * 15 14 10 24 24 H 1.08998 * 109.41125 * 289.03668 * 16 15 14 25 25 H 1.08998 * 109.33776 * 169.23635 * 16 15 14 26 26 H 1.08995 * 109.60450 * 177.36222 * 17 16 15 27 27 H 1.09005 * 109.60248 * 56.89138 * 17 16 15 28 28 H 0.97001 * 121.95579 * 347.20149 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 7 2.7347 -4.2403 1.0383 12 7 3.5377 -5.1808 0.6711 13 6 3.5842 -5.2321 -0.6272 14 7 2.7500 -4.2564 -1.1040 15 6 2.5368 -3.9821 -2.5237 16 6 3.6888 -4.6000 -3.3261 17 6 3.9028 -6.0548 -2.8940 18 7 4.2992 -6.0729 -1.4720 19 1 -0.4850 0.8401 -0.0004 20 1 0.6242 -2.5609 0.8844 21 1 0.6244 -2.5529 -0.8956 22 1 2.5117 -2.9052 -2.6906 23 1 1.5922 -4.4232 -2.8415 24 1 4.6011 -4.0311 -3.1469 25 1 3.4459 -4.5698 -4.3882 26 1 4.6905 -6.5038 -3.4989 27 1 2.9763 -6.6145 -3.0224 28 1 5.0170 -6.6383 -1.1465 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261253846.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:12 Heat of formation + Delta-G solvation = 57.562515 kcal Electronic energy + Delta-G solvation = -13556.755411 eV Core-core repulsion = 11222.021197 eV Total energy + Delta-G solvation = -2334.734214 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -43.83251 -38.44040 -35.91484 -34.85460 -32.25278 -32.05923 -29.03990 -26.52763 -25.50317 -23.95493 -22.20792 -20.62227 -18.68618 -18.10626 -17.49771 -17.09443 -16.65854 -16.24717 -15.26563 -14.78337 -14.59413 -14.27273 -13.73443 -13.43080 -12.94977 -12.68935 -12.54256 -12.38747 -12.08928 -11.95382 -11.77370 -11.19931 -11.09051 -10.77663 -10.64154 -8.77818 -8.24447 -6.39164 1.16819 1.39071 1.42431 1.49080 1.54455 2.08932 2.38678 2.42460 3.06215 3.47550 3.80689 3.93354 4.10619 4.27813 4.35922 4.53246 4.61845 4.77822 4.87489 5.10515 5.14320 5.21219 5.44246 5.64505 5.68065 6.02251 6.34616 6.66886 6.76088 7.29346 8.03147 8.84192 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.043313 B = 0.009184 C = 0.008494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.296231 B = 3048.123114 C = 3295.792678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.018 3.982 3 Si 0.968 3.032 4 H -0.274 1.274 5 H -0.266 1.266 6 H -0.277 1.277 7 C -0.531 4.531 8 H 0.043 0.957 9 C 0.115 3.885 10 C 0.211 3.789 11 N -0.348 5.348 12 N -0.390 5.390 13 C 0.423 3.577 14 N -0.503 5.503 15 C 0.095 3.905 16 C -0.144 4.144 17 C 0.123 3.877 18 N -0.705 5.705 19 H 0.270 0.730 20 H 0.024 0.976 21 H 0.034 0.966 22 H 0.089 0.911 23 H 0.097 0.903 24 H 0.069 0.931 25 H 0.143 0.857 26 H 0.137 0.863 27 H 0.069 0.931 28 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.991 -9.245 -12.839 17.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.182 4.182 3 Si 0.792 3.208 4 H -0.199 1.199 5 H -0.191 1.191 6 H -0.202 1.202 7 C -0.570 4.570 8 H 0.062 0.938 9 C 0.076 3.924 10 C -0.060 4.060 11 N -0.185 5.185 12 N -0.235 5.235 13 C 0.064 3.936 14 N -0.203 5.203 15 C -0.027 4.027 16 C -0.182 4.182 17 C 0.000 4.000 18 N -0.357 5.357 19 H 0.079 0.921 20 H 0.042 0.958 21 H 0.052 0.948 22 H 0.107 0.893 23 H 0.115 0.885 24 H 0.088 0.912 25 H 0.161 0.839 26 H 0.155 0.845 27 H 0.087 0.913 28 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 7.033 -9.457 -11.525 16.484 hybrid contribution 0.099 1.058 -0.663 1.253 sum 7.132 -8.399 -12.188 16.430 Atomic orbital electron populations 1.70041 1.07348 1.28347 1.50147 1.25765 0.95759 1.02630 0.93997 0.85364 0.78435 0.78661 0.78347 1.19853 1.19130 1.20223 1.21076 0.92524 0.90789 1.52606 0.93848 1.17461 0.90438 0.86637 0.97894 1.25146 1.00565 0.98234 0.82014 1.74174 1.11438 1.07406 1.25445 1.73966 1.22367 1.19799 1.07376 1.21495 0.93005 0.89869 0.89188 1.46295 1.37636 1.27167 1.09230 1.22232 1.01869 1.03421 0.75147 1.22348 0.96990 0.96603 1.02305 1.21999 1.03103 0.95992 0.78904 1.43775 1.39506 1.46316 1.06088 0.92066 0.95761 0.94791 0.89305 0.88507 0.91242 0.83938 0.84544 0.91266 0.72849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.33 13.29 21.45 0.28 -53.04 15 2 C 0.02 1.02 5.46 84.66 0.46 1.49 15 3 Si 0.97 43.72 29.54 68.60 2.03 45.75 15 4 H -0.27 -12.33 7.11 99.48 0.71 -11.62 15 5 H -0.27 -11.27 7.11 99.48 0.71 -10.56 15 6 H -0.28 -12.28 7.11 99.48 0.71 -11.57 15 7 C -0.53 -30.51 9.09 25.60 0.23 -30.28 15 8 H 0.04 2.56 7.74 -2.91 -0.02 2.54 15 9 C 0.12 6.28 5.42 29.10 0.16 6.43 15 10 C 0.21 10.63 7.31 137.86 1.01 11.64 15 11 N -0.35 -18.67 12.21 -49.95 -0.61 -19.28 15 12 N -0.39 -18.60 12.21 -58.07 -0.71 -19.31 15 13 C 0.42 16.30 8.79 260.18 2.29 18.59 15 14 N -0.50 -20.15 3.18 -515.67 -1.64 -21.79 15 15 C 0.09 2.70 6.94 86.58 0.60 3.30 15 16 C -0.14 -2.49 6.10 30.81 0.19 -2.30 15 17 C 0.12 1.85 7.08 86.25 0.61 2.46 15 18 N -0.71 -17.41 6.05 -345.84 -2.09 -19.50 15 19 H 0.27 14.56 8.31 -92.70 -0.77 13.79 15 20 H 0.02 1.44 8.14 -2.38 -0.02 1.42 15 21 H 0.03 1.81 8.12 -2.39 -0.02 1.79 15 22 H 0.09 2.80 8.14 -2.39 -0.02 2.78 15 23 H 0.10 2.39 8.14 -2.39 -0.02 2.37 15 24 H 0.07 1.39 8.14 -2.39 -0.02 1.37 15 25 H 0.14 1.25 8.14 -2.39 -0.02 1.24 15 26 H 0.14 0.88 8.14 -2.39 -0.02 0.86 15 27 H 0.07 1.00 8.14 -2.38 -0.02 0.98 15 28 H 0.43 8.66 8.96 -92.71 -0.83 7.82 15 Total: -1.00 -75.82 244.11 3.15 -72.68 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: 0.34 Total: 3.18 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: 5.55 Total: 11.33 kcal Atomic # 7 Polarization: -128.17 SS G_CDS: -4.77 Total: -132.93 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -75.82 3.15 -72.68 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261253846.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.239 kcal (2) G-P(sol) polarization free energy of solvation -75.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds