Wall clock time and date at job start Mon Mar 30 2020 02:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35924 * 116.99880 * 2 1 4 4 C 1.39117 * 120.85632 * 0.22601 * 3 2 1 5 5 N 1.32276 * 119.03263 * 180.27164 * 4 3 2 6 6 C 1.31801 * 120.87717 * 359.74500 * 5 4 3 7 7 N 1.31777 * 121.88612 * 0.02562 * 6 5 4 8 8 C 1.32297 * 120.88226 * 359.97438 * 7 6 5 9 9 C 1.50696 * 120.48627 * 179.97438 * 8 7 6 10 10 H 1.09002 * 109.47427 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.47156 * 60.00013 * 9 8 7 12 12 C 1.50699 * 109.47084 * 299.99841 * 9 8 7 13 13 H 1.08001 * 119.99808 * 35.01936 * 12 9 8 14 14 C 1.37879 * 120.00270 * 215.01430 * 12 9 8 15 15 N 1.31513 * 119.99894 * 184.92111 * 14 12 9 16 16 Si 1.86796 * 119.99916 * 4.91848 * 14 12 9 17 17 H 1.48499 * 109.47231 * 84.83295 * 16 14 12 18 18 H 1.48502 * 109.47216 * 204.83678 * 16 14 12 19 19 H 1.48502 * 109.46940 * 324.83504 * 16 14 12 20 20 H 1.08998 * 109.47144 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.47408 * 299.99738 * 1 2 3 22 22 H 1.09002 * 109.46768 * 59.99633 * 1 2 3 23 23 H 1.07998 * 120.48600 * 359.97438 * 4 3 2 24 24 H 1.08000 * 119.05713 * 180.02562 * 6 5 4 25 25 H 1.08998 * 109.46687 * 55.01809 * 11 9 8 26 26 H 1.09002 * 109.46959 * 175.01477 * 11 9 8 27 27 H 1.08994 * 109.47086 * 295.02210 * 11 9 8 28 28 H 0.96999 * 119.99644 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.3059 2.3890 0.0047 5 7 1.9436 3.5479 -0.0009 6 6 3.2607 3.5952 -0.0059 7 7 3.9965 2.5019 -0.0059 8 6 3.4337 1.3047 -0.0004 9 6 4.2837 0.0603 -0.0011 10 1 3.6402 -0.8194 0.0044 11 6 5.1725 0.0491 1.2443 12 6 5.1482 0.0432 -1.2353 13 1 5.5400 0.9677 -1.6330 14 6 5.4390 -1.1528 -1.8568 15 7 6.2707 -1.1794 -2.8752 16 14 4.6517 -2.7351 -1.2523 17 1 3.3149 -2.8939 -1.8792 18 1 5.5116 -3.8883 -1.6212 19 1 4.5027 -2.6812 0.2243 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 0.2264 2.3577 0.0080 24 1 3.7510 4.5574 -0.0100 25 1 4.5518 0.1507 2.1345 26 1 5.7221 -0.8911 1.2899 27 1 5.8766 0.8797 1.1956 28 1 6.4750 -2.0207 -3.3127 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261280654.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:20 Heat of formation + Delta-G solvation = -17.349864 kcal Electronic energy + Delta-G solvation = -13632.200178 eV Core-core repulsion = 11261.924768 eV Total energy + Delta-G solvation = -2370.275410 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.18957 -39.37922 -36.81038 -34.41699 -33.07498 -31.33391 -28.50099 -27.25698 -25.58708 -24.52868 -21.98803 -19.47282 -18.95070 -18.41986 -17.72049 -16.93886 -16.27086 -15.45726 -15.18763 -14.96718 -14.68373 -14.40810 -14.01509 -13.26038 -12.99445 -12.85052 -12.60350 -12.41345 -12.19794 -11.98020 -11.77141 -11.45520 -11.11970 -10.74343 -10.01212 -9.50295 -8.29027 -6.33549 0.08064 0.11485 1.36722 1.37701 1.49244 2.24568 2.35608 2.84697 3.06788 3.30631 3.34598 3.42931 3.87399 4.32993 4.38285 4.40902 4.53707 4.69764 4.74427 4.88651 4.98559 5.19238 5.33059 5.56756 5.64223 5.94568 6.29285 6.33189 6.73054 7.23097 7.30561 8.87718 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.031788 B = 0.012906 C = 0.010620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.611685 B = 2169.035878 C = 2636.006872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.322 6.322 3 C 0.010 3.990 4 C 0.069 3.931 5 N -0.508 5.508 6 C 0.242 3.758 7 N -0.504 5.504 8 C 0.167 3.833 9 C 0.053 3.947 10 H 0.058 0.942 11 C -0.123 4.123 12 C -0.502 4.502 13 H 0.033 0.967 14 C 0.014 3.986 15 N -0.947 5.947 16 Si 0.939 3.061 17 H -0.265 1.265 18 H -0.284 1.284 19 H -0.241 1.241 20 H 0.121 0.879 21 H 0.079 0.921 22 H 0.069 0.931 23 H 0.205 0.795 24 H 0.221 0.779 25 H 0.046 0.954 26 H 0.048 0.952 27 H 0.045 0.955 28 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.569 2.344 8.135 15.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.234 6.234 3 C -0.040 4.040 4 C -0.097 4.097 5 N -0.223 5.223 6 C -0.045 4.045 7 N -0.218 5.218 8 C 0.020 3.980 9 C 0.034 3.966 10 H 0.076 0.924 11 C -0.181 4.181 12 C -0.540 4.540 13 H 0.051 0.949 14 C -0.184 4.184 15 N -0.587 5.587 16 Si 0.762 3.238 17 H -0.190 1.190 18 H -0.210 1.210 19 H -0.164 1.164 20 H 0.139 0.861 21 H 0.097 0.903 22 H 0.087 0.913 23 H 0.222 0.778 24 H 0.237 0.763 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.973 2.912 8.006 15.520 hybrid contribution -0.377 -1.228 -0.386 1.341 sum -13.349 1.684 7.619 15.463 Atomic orbital electron populations 1.23533 0.75812 1.06269 1.02933 1.86157 1.23995 1.24846 1.88370 1.20745 0.93968 0.87842 1.01477 1.23803 1.02225 0.86016 0.97646 1.68263 1.11612 1.28673 1.13785 1.25346 0.86668 0.97884 0.94599 1.68254 1.41928 0.98631 1.12999 1.21790 0.89689 0.94931 0.91606 1.18186 0.93238 0.89886 0.95334 0.92405 1.21787 0.99285 1.01133 0.95887 1.20969 1.29472 0.93751 1.09856 0.94910 1.25931 0.95095 1.02638 0.94703 1.70049 1.36340 1.28015 1.24261 0.85848 0.78814 0.78333 0.80783 1.18954 1.21024 1.16408 0.86065 0.90259 0.91281 0.77815 0.76304 0.93509 0.93261 0.93539 0.92379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.84 113.37 1.12 1.28 15 2 O -0.32 -10.69 9.40 -92.70 -0.87 -11.56 15 3 C 0.01 0.37 6.70 22.68 0.15 0.52 15 4 C 0.07 2.07 10.31 84.84 0.87 2.95 15 5 N -0.51 -16.51 10.43 -199.68 -2.08 -18.59 15 6 C 0.24 8.45 12.28 180.89 2.22 10.68 15 7 N -0.50 -21.76 10.09 -187.74 -1.89 -23.65 15 8 C 0.17 7.43 5.48 42.69 0.23 7.66 15 9 C 0.05 2.59 2.21 -12.29 -0.03 2.56 15 10 H 0.06 2.76 4.25 -2.39 -0.01 2.75 15 11 C -0.12 -5.37 9.07 71.98 0.65 -4.72 15 12 C -0.50 -29.57 8.76 25.60 0.22 -29.35 15 13 H 0.03 2.19 8.01 -2.91 -0.02 2.16 15 14 C 0.01 0.80 5.47 84.66 0.46 1.26 15 15 N -0.95 -59.95 13.96 21.45 0.30 -59.65 15 16 Si 0.94 44.21 26.99 68.60 1.85 46.06 15 17 H -0.26 -11.97 7.11 99.48 0.71 -11.27 15 18 H -0.28 -13.09 7.11 99.48 0.71 -12.38 15 19 H -0.24 -10.40 6.82 99.48 0.68 -9.72 15 20 H 0.12 1.81 8.14 -2.39 -0.02 1.79 15 21 H 0.08 1.11 7.70 -2.39 -0.02 1.10 15 22 H 0.07 1.13 7.72 -2.39 -0.02 1.11 15 23 H 0.21 4.07 6.47 -2.91 -0.02 4.05 15 24 H 0.22 5.90 8.06 -2.91 -0.02 5.88 15 25 H 0.05 1.76 8.14 -2.39 -0.02 1.74 15 26 H 0.05 2.10 8.14 -2.39 -0.02 2.08 15 27 H 0.05 2.09 8.14 -2.39 -0.02 2.07 15 28 H 0.27 15.74 8.31 -92.71 -0.77 14.97 15 Total: -1.00 -72.54 245.10 4.34 -68.19 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: 1.13 Total: 6.35 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: 5.91 Total: -7.16 kcal Atomic # 7 Polarization: -98.21 SS G_CDS: -3.68 Total: -101.89 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: -0.87 Total: -11.56 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.85 Total: 46.06 kcal Total: -72.54 4.34 -68.19 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261280654.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.844 kcal (2) G-P(sol) polarization free energy of solvation -72.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds