Wall clock time and date at job start Mon Mar 30 2020 02:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35925 * 116.99658 * 2 1 4 4 C 1.39113 * 120.85554 * 0.02562 * 3 2 1 5 5 N 1.32277 * 119.02683 * 179.97438 * 4 3 2 6 6 C 1.31797 * 120.88049 * 359.97438 * 5 4 3 7 7 N 1.31773 * 121.88811 * 359.72655 * 6 5 4 8 8 C 1.32308 * 120.87555 * 0.56463 * 7 6 5 9 9 C 1.50696 * 120.47964 * 179.72202 * 8 7 6 10 10 H 1.09005 * 109.47090 * 179.72728 * 9 8 7 11 11 C 1.53001 * 109.47114 * 299.72099 * 9 8 7 12 12 C 1.50694 * 109.47427 * 59.72382 * 9 8 7 13 13 H 1.08000 * 120.00225 * 354.48679 * 12 9 8 14 14 C 1.37880 * 120.00098 * 174.48586 * 12 9 8 15 15 N 1.31511 * 120.00218 * 164.75368 * 14 12 9 16 16 Si 1.86800 * 119.99782 * 344.76073 * 14 12 9 17 17 H 1.48497 * 109.47240 * 269.99757 * 16 14 12 18 18 H 1.48497 * 109.47222 * 29.99766 * 16 14 12 19 19 H 1.48504 * 109.47139 * 149.99768 * 16 14 12 20 20 H 1.08999 * 109.47429 * 59.99900 * 1 2 3 21 21 H 1.09003 * 109.47090 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.46966 * 299.99626 * 1 2 3 23 23 H 1.07997 * 120.48594 * 359.95331 * 4 3 2 24 24 H 1.07999 * 119.05746 * 179.97438 * 6 5 4 25 25 H 1.09002 * 109.47128 * 293.68190 * 11 9 8 26 26 H 1.09001 * 109.47164 * 53.67467 * 11 9 8 27 27 H 1.08994 * 109.47265 * 173.67440 * 11 9 8 28 28 H 0.97002 * 120.00154 * 354.91147 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.3058 2.3890 0.0005 5 7 1.9436 3.5478 0.0010 6 6 3.2607 3.5951 0.0015 7 7 3.9965 2.5019 0.0069 8 6 3.4336 1.3046 0.0008 9 6 4.2837 0.0603 0.0008 10 1 3.6401 -0.8195 0.0002 11 6 5.1673 0.0464 -1.2482 12 6 5.1532 0.0458 1.2314 13 1 5.1620 0.8967 1.8965 14 6 5.9376 -1.0538 1.5085 15 7 6.9075 -0.9638 2.3921 16 14 5.6228 -2.6712 0.6286 17 1 4.6508 -3.4783 1.4090 18 1 5.0691 -2.4001 -0.7224 19 1 6.8981 -3.4210 0.4996 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 0.2263 2.3576 0.0002 24 1 3.7510 4.5574 0.0015 25 1 4.5416 -0.0564 -2.1348 26 1 5.7291 0.9787 -1.3062 27 1 5.8607 -0.7928 -1.1935 28 1 7.1191 -0.1070 2.7945 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261280666.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:22 Heat of formation + Delta-G solvation = 6.240710 kcal Electronic energy + Delta-G solvation = -13608.501825 eV Core-core repulsion = 11239.249379 eV Total energy + Delta-G solvation = -2369.252446 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.81821 -38.13244 -35.13413 -32.64788 -31.29171 -29.78660 -27.49970 -24.87223 -23.88075 -23.21201 -20.18324 -17.87929 -17.70972 -17.10087 -16.09350 -15.75865 -14.36095 -14.00415 -13.86255 -13.57334 -13.11201 -12.59110 -12.03445 -11.94467 -11.46666 -11.23625 -11.05480 -10.82563 -10.50437 -10.05029 -9.91837 -9.57688 -8.84743 -8.61019 -8.29141 -8.13826 -6.40924 -4.03148 1.41725 1.56904 3.38756 3.45258 3.46549 3.62132 4.27413 4.52149 4.53440 4.66120 4.82799 5.00464 5.16303 5.29883 5.32224 5.49144 5.83149 6.07690 6.44018 6.54417 6.73836 6.81601 7.01591 7.31258 7.41267 7.63158 8.03099 8.42928 8.64755 8.93304 9.63084 10.97345 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.034245 B = 0.011993 C = 0.010023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.432252 B = 2334.112479 C = 2792.843250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.295 6.295 3 C 0.013 3.987 4 C 0.052 3.948 5 N -0.512 5.512 6 C 0.246 3.754 7 N -0.472 5.472 8 C 0.211 3.789 9 C 0.060 3.940 10 H 0.049 0.951 11 C -0.135 4.135 12 C -0.581 4.581 13 H 0.059 0.941 14 C 0.033 3.967 15 N -0.906 5.906 16 Si 1.041 2.959 17 H -0.286 1.286 18 H -0.269 1.269 19 H -0.286 1.286 20 H 0.052 0.948 21 H 0.102 0.898 22 H 0.054 0.946 23 H 0.160 0.840 24 H 0.190 0.810 25 H 0.020 0.980 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.802 2.616 -6.443 13.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.205 6.205 3 C -0.038 4.038 4 C -0.113 4.113 5 N -0.227 5.227 6 C -0.041 4.041 7 N -0.185 5.185 8 C 0.062 3.938 9 C 0.040 3.960 10 H 0.067 0.933 11 C -0.193 4.193 12 C -0.619 4.619 13 H 0.077 0.923 14 C -0.172 4.172 15 N -0.540 5.540 16 Si 0.869 3.131 17 H -0.212 1.212 18 H -0.195 1.195 19 H -0.212 1.212 20 H 0.071 0.929 21 H 0.120 0.880 22 H 0.072 0.928 23 H 0.177 0.823 24 H 0.207 0.793 25 H 0.039 0.961 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.803 1.720 -6.503 12.726 hybrid contribution -1.241 1.140 0.246 1.703 sum -12.044 2.860 -6.257 13.870 Atomic orbital electron populations 1.23092 0.79106 1.04159 1.00952 1.86215 1.20570 1.25209 1.88513 1.20821 0.94873 0.86369 1.01717 1.23142 1.00431 0.87409 1.00336 1.68133 1.11969 1.28377 1.14251 1.24766 0.86241 0.97689 0.95446 1.68377 1.40355 0.97920 1.11889 1.21976 0.88036 0.95312 0.88459 1.18257 0.93234 0.87854 0.96681 0.93345 1.22121 0.99396 1.01919 0.95857 1.21804 1.26637 1.05342 1.08140 0.92322 1.25741 0.92404 1.02462 0.96561 1.70794 1.26593 1.28713 1.27891 0.84154 0.76488 0.75716 0.76764 1.21248 1.19453 1.21185 0.92903 0.87979 0.92778 0.82276 0.79340 0.96089 0.92715 0.92606 0.92127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.84 101.05 0.99 1.25 15 2 O -0.29 -5.17 9.40 -19.50 -0.18 -5.35 15 3 C 0.01 0.24 6.70 -38.95 -0.26 -0.02 15 4 C 0.05 0.86 10.31 -17.04 -0.18 0.68 15 5 N -0.51 -9.04 10.43 -14.47 -0.15 -9.19 15 6 C 0.25 4.51 12.28 -92.17 -1.13 3.38 15 7 N -0.47 -10.33 9.95 -10.70 -0.11 -10.43 15 8 C 0.21 4.75 5.43 -82.08 -0.45 4.31 15 9 C 0.06 1.47 2.10 -92.93 -0.19 1.27 15 10 H 0.05 1.19 5.73 -51.93 -0.30 0.89 15 11 C -0.13 -3.07 8.44 37.16 0.31 -2.76 15 12 C -0.58 -16.64 8.73 -34.44 -0.30 -16.94 15 13 H 0.06 1.85 7.99 -52.49 -0.42 1.43 15 14 C 0.03 0.96 5.33 -17.82 -0.09 0.86 15 15 N -0.91 -28.06 13.70 55.43 0.76 -27.31 15 16 Si 1.04 25.06 26.17 -169.99 -4.45 20.61 15 17 H -0.29 -6.66 7.11 56.52 0.40 -6.26 15 18 H -0.27 -5.90 5.54 56.52 0.31 -5.59 15 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 15 20 H 0.05 0.49 7.71 -51.93 -0.40 0.09 15 21 H 0.10 0.92 8.14 -51.93 -0.42 0.49 15 22 H 0.05 0.54 7.71 -51.93 -0.40 0.14 15 23 H 0.16 1.99 6.47 -52.49 -0.34 1.66 15 24 H 0.19 2.74 8.06 -52.49 -0.42 2.32 15 25 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 15 26 H 0.05 1.25 7.92 -51.93 -0.41 0.84 15 27 H 0.06 1.27 5.06 -51.93 -0.26 1.01 15 28 H 0.27 8.36 8.73 -40.82 -0.36 8.00 15 LS Contribution 240.21 15.07 3.62 3.62 Total: -1.00 -32.62 240.21 -4.85 -37.47 By element: Atomic # 1 Polarization: 1.58 SS G_CDS: -3.04 Total: -1.46 kcal Atomic # 6 Polarization: -6.67 SS G_CDS: -1.30 Total: -7.96 kcal Atomic # 7 Polarization: -47.43 SS G_CDS: 0.50 Total: -46.93 kcal Atomic # 8 Polarization: -5.17 SS G_CDS: -0.18 Total: -5.35 kcal Atomic # 14 Polarization: 25.06 SS G_CDS: -4.45 Total: 20.61 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -32.62 -4.85 -37.47 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261280666.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.710 kcal (2) G-P(sol) polarization free energy of solvation -32.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds