Wall clock time and date at job start Mon Mar 30 2020 02:08:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35925 * 116.99658 * 2 1 4 4 C 1.39113 * 120.85554 * 0.02562 * 3 2 1 5 5 N 1.32277 * 119.02683 * 179.97438 * 4 3 2 6 6 C 1.31797 * 120.88049 * 359.97438 * 5 4 3 7 7 N 1.31773 * 121.88811 * 359.72655 * 6 5 4 8 8 C 1.32308 * 120.87555 * 0.56463 * 7 6 5 9 9 C 1.50696 * 120.47964 * 179.72202 * 8 7 6 10 10 H 1.09005 * 109.47090 * 179.72728 * 9 8 7 11 11 C 1.53001 * 109.47114 * 299.72099 * 9 8 7 12 12 C 1.50694 * 109.47427 * 59.72382 * 9 8 7 13 13 H 1.08000 * 120.00225 * 354.48679 * 12 9 8 14 14 C 1.37880 * 120.00098 * 174.48586 * 12 9 8 15 15 N 1.31511 * 120.00218 * 164.75368 * 14 12 9 16 16 Si 1.86800 * 119.99782 * 344.76073 * 14 12 9 17 17 H 1.48497 * 109.47240 * 269.99757 * 16 14 12 18 18 H 1.48497 * 109.47222 * 29.99766 * 16 14 12 19 19 H 1.48504 * 109.47139 * 149.99768 * 16 14 12 20 20 H 1.08999 * 109.47429 * 59.99900 * 1 2 3 21 21 H 1.09003 * 109.47090 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.46966 * 299.99626 * 1 2 3 23 23 H 1.07997 * 120.48594 * 359.95331 * 4 3 2 24 24 H 1.07999 * 119.05746 * 179.97438 * 6 5 4 25 25 H 1.09002 * 109.47128 * 293.68190 * 11 9 8 26 26 H 1.09001 * 109.47164 * 53.67467 * 11 9 8 27 27 H 1.08994 * 109.47265 * 173.67440 * 11 9 8 28 28 H 0.97002 * 120.00154 * 354.91147 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.3058 2.3890 0.0005 5 7 1.9436 3.5478 0.0010 6 6 3.2607 3.5951 0.0015 7 7 3.9965 2.5019 0.0069 8 6 3.4336 1.3046 0.0008 9 6 4.2837 0.0603 0.0008 10 1 3.6401 -0.8195 0.0002 11 6 5.1673 0.0464 -1.2482 12 6 5.1532 0.0458 1.2314 13 1 5.1620 0.8967 1.8965 14 6 5.9376 -1.0538 1.5085 15 7 6.9075 -0.9638 2.3921 16 14 5.6228 -2.6712 0.6286 17 1 4.6508 -3.4783 1.4090 18 1 5.0691 -2.4001 -0.7224 19 1 6.8981 -3.4210 0.4996 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8901 23 1 0.2263 2.3576 0.0002 24 1 3.7510 4.5574 0.0015 25 1 4.5416 -0.0564 -2.1348 26 1 5.7291 0.9787 -1.3062 27 1 5.8607 -0.7928 -1.1935 28 1 7.1191 -0.1070 2.7945 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261280666.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:21 Heat of formation + Delta-G solvation = -17.141336 kcal Electronic energy + Delta-G solvation = -13609.515746 eV Core-core repulsion = 11239.249379 eV Total energy + Delta-G solvation = -2370.266367 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.23861 -39.40216 -36.93054 -34.50389 -33.04361 -31.34197 -28.51000 -26.83776 -25.58276 -24.56805 -21.99106 -19.76748 -18.98560 -18.76465 -17.60987 -16.97215 -16.04395 -15.44339 -15.26047 -15.04321 -14.75271 -14.36291 -13.99885 -13.26431 -13.02234 -12.81764 -12.42717 -12.41267 -12.22129 -11.77742 -11.62683 -11.38923 -10.95470 -10.50325 -10.08030 -9.57487 -8.70955 -6.34749 0.02952 0.06278 1.51219 1.56648 1.75727 2.22069 2.53382 2.81373 3.07706 3.25176 3.31499 3.35878 3.84249 4.30325 4.36142 4.40907 4.55226 4.68203 4.75522 4.84739 4.98071 5.17283 5.28622 5.60552 5.84848 6.02003 6.05295 6.27252 6.55877 7.18292 7.40948 8.64521 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.034245 B = 0.011993 C = 0.010023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.432252 B = 2334.112479 C = 2792.843250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.318 6.318 3 C 0.014 3.986 4 C 0.068 3.932 5 N -0.507 5.507 6 C 0.239 3.761 7 N -0.506 5.506 8 C 0.166 3.834 9 C 0.058 3.942 10 H 0.054 0.946 11 C -0.130 4.130 12 C -0.580 4.580 13 H 0.010 0.990 14 C -0.020 4.020 15 N -0.939 5.939 16 Si 1.083 2.917 17 H -0.272 1.272 18 H -0.234 1.234 19 H -0.285 1.285 20 H 0.077 0.923 21 H 0.124 0.876 22 H 0.068 0.932 23 H 0.207 0.793 24 H 0.219 0.781 25 H 0.050 0.950 26 H 0.041 0.959 27 H 0.052 0.948 28 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.534 2.194 -8.069 16.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.229 6.229 3 C -0.036 4.036 4 C -0.098 4.098 5 N -0.222 5.222 6 C -0.048 4.048 7 N -0.220 5.220 8 C 0.018 3.982 9 C 0.039 3.961 10 H 0.072 0.928 11 C -0.188 4.188 12 C -0.618 4.618 13 H 0.029 0.971 14 C -0.217 4.217 15 N -0.575 5.575 16 Si 0.903 3.097 17 H -0.197 1.197 18 H -0.157 1.157 19 H -0.211 1.211 20 H 0.096 0.904 21 H 0.143 0.857 22 H 0.087 0.913 23 H 0.223 0.777 24 H 0.235 0.765 25 H 0.069 0.931 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -13.550 1.319 -8.136 15.860 hybrid contribution -0.537 1.391 0.794 1.690 sum -14.087 2.711 -7.341 16.115 Atomic orbital electron populations 1.23546 0.75731 1.06440 1.02805 1.86176 1.24007 1.24522 1.88199 1.20731 0.93859 0.87971 1.01082 1.23839 1.02295 0.85999 0.97675 1.68258 1.11520 1.28778 1.13638 1.25322 0.86722 0.97835 0.94898 1.68263 1.42071 0.98758 1.12949 1.21696 0.89753 0.94780 0.91928 1.18105 0.93181 0.89741 0.95112 0.92821 1.22003 0.99346 1.01112 0.96312 1.21902 1.27274 1.03475 1.09138 0.97134 1.27289 0.91537 1.06309 0.96545 1.70936 1.28817 1.27636 1.30113 0.83673 0.76942 0.71496 0.77630 1.19724 1.15699 1.21134 0.90434 0.85744 0.91349 0.77653 0.76457 0.93125 0.93985 0.92952 0.94121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.84 113.37 1.12 1.27 15 2 O -0.32 -10.25 9.40 -92.70 -0.87 -11.12 15 3 C 0.01 0.51 6.70 22.68 0.15 0.67 15 4 C 0.07 2.03 10.31 84.84 0.87 2.91 15 5 N -0.51 -16.54 10.43 -199.69 -2.08 -18.62 15 6 C 0.24 8.48 12.28 180.89 2.22 10.71 15 7 N -0.51 -22.25 9.95 -187.75 -1.87 -24.12 15 8 C 0.17 7.41 5.43 42.69 0.23 7.64 15 9 C 0.06 2.86 2.10 -12.29 -0.03 2.83 15 10 H 0.05 2.55 5.73 -2.38 -0.01 2.54 15 11 C -0.13 -5.79 8.44 71.98 0.61 -5.18 15 12 C -0.58 -34.28 8.73 25.60 0.22 -34.06 15 13 H 0.01 0.69 7.99 -2.91 -0.02 0.67 15 14 C -0.02 -1.17 5.33 84.66 0.45 -0.72 15 15 N -0.94 -60.41 13.70 21.45 0.29 -60.12 15 16 Si 1.08 49.97 26.17 68.60 1.80 51.77 15 17 H -0.27 -11.85 7.11 99.48 0.71 -11.14 15 18 H -0.23 -9.38 5.54 99.48 0.55 -8.83 15 19 H -0.29 -13.10 7.11 99.48 0.71 -12.39 15 20 H 0.08 1.04 7.71 -2.39 -0.02 1.02 15 21 H 0.12 1.70 8.14 -2.39 -0.02 1.68 15 22 H 0.07 1.06 7.71 -2.38 -0.02 1.04 15 23 H 0.21 4.03 6.47 -2.91 -0.02 4.01 15 24 H 0.22 6.02 8.06 -2.91 -0.02 5.99 15 25 H 0.05 1.92 8.14 -2.39 -0.02 1.90 15 26 H 0.04 1.93 7.92 -2.39 -0.02 1.91 15 27 H 0.05 2.32 5.06 -2.39 -0.01 2.30 15 28 H 0.25 16.49 8.73 -92.71 -0.81 15.69 15 Total: -1.00 -73.83 240.21 4.09 -69.75 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: 0.97 Total: 6.39 kcal Atomic # 6 Polarization: -19.78 SS G_CDS: 5.85 Total: -13.93 kcal Atomic # 7 Polarization: -99.20 SS G_CDS: -3.66 Total: -102.86 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: -0.87 Total: -11.12 kcal Atomic # 14 Polarization: 49.97 SS G_CDS: 1.80 Total: 51.77 kcal Total: -73.83 4.09 -69.75 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261280666.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.606 kcal (2) G-P(sol) polarization free energy of solvation -73.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds