Wall clock time and date at job start Mon Mar 30 2020 02:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36056 * 119.61399 * 2 1 4 4 C 1.35877 * 120.58126 * 179.97438 * 3 2 1 5 5 N 1.40315 * 120.08060 * 180.02562 * 4 3 2 6 6 C 1.40610 * 119.83027 * 359.79690 * 4 3 2 7 7 C 1.36372 * 119.25299 * 0.47248 * 6 4 3 8 8 C 1.50697 * 120.29832 * 179.78479 * 7 6 4 9 9 C 1.50700 * 109.47266 * 94.72111 * 8 7 6 10 10 H 1.07999 * 119.99988 * 0.02562 * 9 8 7 11 11 C 1.37885 * 120.00047 * 180.02562 * 9 8 7 12 12 N 1.31518 * 119.99792 * 359.72305 * 11 9 8 13 13 Si 1.86795 * 120.00009 * 180.02562 * 11 9 8 14 14 H 1.48508 * 109.47021 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47081 * 119.99727 * 13 11 9 16 16 H 1.48501 * 109.47213 * 240.00099 * 13 11 9 17 17 C 1.34639 * 119.61607 * 180.02562 * 2 1 3 18 18 O 1.22112 * 119.91977 * 359.97360 * 17 2 1 19 19 H 1.08996 * 109.47157 * 269.97570 * 1 2 3 20 20 H 1.08997 * 109.47091 * 29.97485 * 1 2 3 21 21 H 1.09002 * 109.47265 * 149.97684 * 1 2 3 22 22 H 1.07991 * 119.70992 * 0.02562 * 3 2 1 23 23 H 0.96993 * 120.00470 * 0.02562 * 5 4 3 24 24 H 0.96998 * 119.99471 * 179.97438 * 5 4 3 25 25 H 1.08003 * 120.37545 * 180.23641 * 6 4 3 26 26 H 1.09004 * 109.47205 * 334.72204 * 8 7 6 27 27 H 1.08997 * 109.47395 * 214.72697 * 8 7 6 28 28 H 0.97000 * 119.99468 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1373 1.1828 0.0000 4 6 3.4959 1.2058 0.0005 5 7 4.1786 2.4316 0.0011 6 6 4.2158 -0.0020 0.0054 7 6 3.5350 -1.1837 -0.0003 8 6 4.2829 -2.4920 -0.0001 9 6 4.4246 -2.9894 1.4153 10 1 4.0138 -2.4158 2.2330 11 6 5.0788 -4.1770 1.6665 12 7 5.5742 -4.8782 0.6703 13 14 5.2538 -4.7940 3.4209 14 1 4.6095 -3.8317 4.3506 15 1 4.5975 -6.1200 3.5470 16 1 6.6941 -4.9202 3.7599 17 6 2.1303 -1.1705 -0.0005 18 8 1.5112 -2.2230 -0.0005 19 1 -0.3633 -0.0004 1.0276 20 1 -0.3633 0.8902 -0.5134 21 1 -0.3634 -0.8898 -0.5142 22 1 1.5863 2.1116 0.0004 23 1 3.6807 3.2641 0.0014 24 1 5.1484 2.4466 0.0018 25 1 5.2958 0.0059 0.0097 26 1 5.2719 -2.3452 -0.4344 27 1 3.7325 -3.2252 -0.5896 28 1 6.0347 -5.7134 0.8470 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261296007.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:08 Heat of formation + Delta-G solvation = -2.504494 kcal Electronic energy + Delta-G solvation = -13348.524927 eV Core-core repulsion = 10978.893261 eV Total energy + Delta-G solvation = -2369.631666 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.55447 -36.65542 -35.05995 -33.59831 -32.07607 -28.91554 -27.02385 -26.59076 -23.71335 -21.95709 -20.83253 -17.54216 -16.72747 -16.24222 -15.89275 -15.25932 -14.97928 -14.40391 -14.37099 -13.02958 -12.80518 -12.52770 -12.15791 -12.02723 -11.90876 -11.47364 -11.10388 -10.62870 -10.45139 -9.89030 -9.71963 -9.44447 -9.02138 -8.35168 -8.30111 -6.55840 -5.91621 -3.94125 1.57315 2.69459 3.27039 3.37344 3.44289 3.49753 4.26322 4.38336 4.58065 5.09142 5.17978 5.42865 5.55009 5.60188 5.68556 5.88721 5.92000 6.56510 6.63898 6.83806 7.14650 7.58222 7.67189 7.82742 7.93752 8.03148 8.04766 8.42291 8.88162 9.08300 9.67318 11.18039 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.035876 B = 0.009496 C = 0.008454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.280373 B = 2948.048104 C = 3311.142267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.494 5.494 3 C -0.027 4.027 4 C 0.127 3.873 5 N -0.883 5.883 6 C -0.106 4.106 7 C -0.100 4.100 8 C 0.066 3.934 9 C -0.500 4.500 10 H 0.054 0.946 11 C 0.057 3.943 12 N -0.895 5.895 13 Si 0.896 3.104 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.284 1.284 17 C 0.503 3.497 18 O -0.542 6.542 19 H 0.064 0.936 20 H 0.072 0.928 21 H 0.087 0.913 22 H 0.141 0.859 23 H 0.391 0.609 24 H 0.397 0.603 25 H 0.129 0.871 26 H 0.031 0.969 27 H 0.040 0.960 28 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.025 15.047 -1.790 15.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.211 5.211 3 C -0.155 4.155 4 C 0.023 3.977 5 N -0.428 5.428 6 C -0.129 4.129 7 C -0.105 4.105 8 C 0.029 3.971 9 C -0.539 4.539 10 H 0.072 0.928 11 C -0.143 4.143 12 N -0.535 5.535 13 Si 0.724 3.276 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.210 1.210 17 C 0.302 3.698 18 O -0.423 6.423 19 H 0.082 0.918 20 H 0.091 0.909 21 H 0.105 0.895 22 H 0.159 0.841 23 H 0.218 0.782 24 H 0.225 0.775 25 H 0.147 0.853 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.397 14.120 -1.827 15.227 hybrid contribution 0.311 0.176 1.021 1.082 sum -5.086 14.297 -0.806 15.196 Atomic orbital electron populations 1.21861 0.78676 1.03682 1.02746 1.44806 1.07795 1.06096 1.62382 1.20371 0.91496 0.89257 1.14348 1.16878 0.90236 0.87045 1.03586 1.42031 1.08371 1.03771 1.88620 1.20947 1.00346 0.90130 1.01467 1.21671 0.92132 0.98703 0.97970 1.18146 0.93905 0.86939 0.98136 1.21008 1.35191 1.06036 0.91617 0.92785 1.24969 0.95726 0.96464 0.97182 1.69969 1.38023 1.14894 1.30611 0.86472 0.77517 0.78846 0.84807 1.19810 1.20922 1.21036 1.17142 0.89321 0.82666 0.80650 1.90926 1.69410 1.29588 1.52408 0.91756 0.90894 0.89460 0.84101 0.78223 0.77490 0.85287 0.95091 0.94147 0.93008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.98 10.36 59.84 0.62 1.60 15 2 N -0.49 -8.66 2.99 -126.98 -0.38 -9.04 15 3 C -0.03 -0.39 10.13 -16.52 -0.17 -0.56 15 4 C 0.13 1.93 6.73 -83.92 -0.56 1.37 15 5 N -0.88 -9.45 9.12 32.31 0.29 -9.15 15 6 C -0.11 -2.00 9.59 -39.36 -0.38 -2.38 15 7 C -0.10 -2.33 5.09 -104.45 -0.53 -2.86 15 8 C 0.07 1.83 4.84 -29.04 -0.14 1.69 15 9 C -0.50 -14.96 9.09 -34.44 -0.31 -15.27 15 10 H 0.05 1.62 7.74 -52.49 -0.41 1.21 15 11 C 0.06 1.71 5.46 -17.82 -0.10 1.61 15 12 N -0.90 -27.66 13.29 55.43 0.74 -26.93 15 13 Si 0.90 22.64 29.54 -169.99 -5.02 17.62 15 14 H -0.27 -6.82 7.11 56.52 0.40 -6.42 15 15 H -0.28 -7.12 7.11 56.52 0.40 -6.71 15 16 H -0.28 -6.96 7.11 56.52 0.40 -6.56 15 17 C 0.50 11.53 7.39 -15.48 -0.11 11.41 15 18 O -0.54 -14.43 15.83 4.82 0.08 -14.36 15 19 H 0.06 0.80 8.14 -51.93 -0.42 0.38 15 20 H 0.07 0.69 8.02 -51.93 -0.42 0.28 15 21 H 0.09 1.28 7.38 -51.93 -0.38 0.90 15 22 H 0.14 1.48 8.04 -52.49 -0.42 1.06 15 23 H 0.39 3.12 8.84 -40.82 -0.36 2.76 15 24 H 0.40 3.76 8.86 -40.82 -0.36 3.40 15 25 H 0.13 2.27 8.06 -52.48 -0.42 1.85 15 26 H 0.03 0.85 8.06 -51.93 -0.42 0.44 15 27 H 0.04 1.24 7.75 -51.93 -0.40 0.83 15 28 H 0.26 7.53 8.31 -40.82 -0.34 7.19 15 LS Contribution 249.96 15.07 3.77 3.77 Total: -1.00 -35.51 249.96 -5.36 -40.88 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -3.15 Total: 0.60 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: -1.69 Total: -3.39 kcal Atomic # 7 Polarization: -45.77 SS G_CDS: 0.65 Total: -45.12 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: 0.08 Total: -14.36 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -35.51 -5.36 -40.88 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261296007.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.372 kcal (2) G-P(sol) polarization free energy of solvation -35.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds