Wall clock time and date at job start Mon Mar 30 2020 02:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36056 * 119.61399 * 2 1 4 4 C 1.35877 * 120.58126 * 179.97438 * 3 2 1 5 5 N 1.40315 * 120.08060 * 180.02562 * 4 3 2 6 6 C 1.40610 * 119.83027 * 359.79690 * 4 3 2 7 7 C 1.36372 * 119.25299 * 0.47248 * 6 4 3 8 8 C 1.50697 * 120.29832 * 179.78479 * 7 6 4 9 9 C 1.50700 * 109.47266 * 94.72111 * 8 7 6 10 10 H 1.07999 * 119.99988 * 0.02562 * 9 8 7 11 11 C 1.37885 * 120.00047 * 180.02562 * 9 8 7 12 12 N 1.31518 * 119.99792 * 359.72305 * 11 9 8 13 13 Si 1.86795 * 120.00009 * 180.02562 * 11 9 8 14 14 H 1.48508 * 109.47021 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47081 * 119.99727 * 13 11 9 16 16 H 1.48501 * 109.47213 * 240.00099 * 13 11 9 17 17 C 1.34639 * 119.61607 * 180.02562 * 2 1 3 18 18 O 1.22112 * 119.91977 * 359.97360 * 17 2 1 19 19 H 1.08996 * 109.47157 * 269.97570 * 1 2 3 20 20 H 1.08997 * 109.47091 * 29.97485 * 1 2 3 21 21 H 1.09002 * 109.47265 * 149.97684 * 1 2 3 22 22 H 1.07991 * 119.70992 * 0.02562 * 3 2 1 23 23 H 0.96993 * 120.00470 * 0.02562 * 5 4 3 24 24 H 0.96998 * 119.99471 * 179.97438 * 5 4 3 25 25 H 1.08003 * 120.37545 * 180.23641 * 6 4 3 26 26 H 1.09004 * 109.47205 * 334.72204 * 8 7 6 27 27 H 1.08997 * 109.47395 * 214.72697 * 8 7 6 28 28 H 0.97000 * 119.99468 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1373 1.1828 0.0000 4 6 3.4959 1.2058 0.0005 5 7 4.1786 2.4316 0.0011 6 6 4.2158 -0.0020 0.0054 7 6 3.5350 -1.1837 -0.0003 8 6 4.2829 -2.4920 -0.0001 9 6 4.4246 -2.9894 1.4153 10 1 4.0138 -2.4158 2.2330 11 6 5.0788 -4.1770 1.6665 12 7 5.5742 -4.8782 0.6703 13 14 5.2538 -4.7940 3.4209 14 1 4.6095 -3.8317 4.3506 15 1 4.5975 -6.1200 3.5470 16 1 6.6941 -4.9202 3.7599 17 6 2.1303 -1.1705 -0.0005 18 8 1.5112 -2.2230 -0.0005 19 1 -0.3633 -0.0004 1.0276 20 1 -0.3633 0.8902 -0.5134 21 1 -0.3634 -0.8898 -0.5142 22 1 1.5863 2.1116 0.0004 23 1 3.6807 3.2641 0.0014 24 1 5.1484 2.4466 0.0018 25 1 5.2958 0.0059 0.0097 26 1 5.2719 -2.3452 -0.4344 27 1 3.7325 -3.2252 -0.5896 28 1 6.0347 -5.7134 0.8470 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261296007.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:08 Heat of formation + Delta-G solvation = -29.954837 kcal Electronic energy + Delta-G solvation = -13349.715263 eV Core-core repulsion = 10978.893261 eV Total energy + Delta-G solvation = -2370.822002 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.06077 -38.13443 -36.61749 -35.34345 -33.93351 -30.49332 -28.68564 -27.93358 -25.67405 -23.47812 -22.46399 -18.88480 -18.56532 -18.01502 -17.34333 -16.74140 -16.54576 -16.06764 -15.63129 -14.66451 -14.49774 -14.15884 -13.89279 -13.35278 -13.24324 -13.20523 -13.07598 -12.61856 -12.45438 -11.78656 -11.64663 -11.09060 -10.73135 -10.59859 -9.91713 -8.22924 -7.80988 -6.31055 0.05934 1.21961 1.35672 1.39024 1.51492 1.93284 2.39798 2.89180 3.10423 3.21232 3.90361 4.04628 4.15467 4.44121 4.51721 4.53157 4.83430 4.90992 5.16843 5.23744 5.37274 5.65797 5.72365 5.80043 6.17885 6.35038 6.71614 6.78642 7.26305 7.29732 7.36711 8.91587 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.035876 B = 0.009496 C = 0.008454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.280373 B = 2948.048104 C = 3311.142267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.482 5.482 3 C 0.003 3.997 4 C 0.117 3.883 5 N -0.863 5.863 6 C -0.069 4.069 7 C -0.170 4.170 8 C 0.081 3.919 9 C -0.521 4.521 10 H 0.046 0.954 11 C 0.000 4.000 12 N -0.932 5.932 13 Si 0.969 3.031 14 H -0.267 1.267 15 H -0.279 1.279 16 H -0.266 1.266 17 C 0.483 3.517 18 O -0.609 6.609 19 H 0.077 0.923 20 H 0.128 0.872 21 H 0.066 0.934 22 H 0.203 0.797 23 H 0.410 0.590 24 H 0.406 0.594 25 H 0.136 0.864 26 H 0.015 0.985 27 H -0.012 1.012 28 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.577 18.697 -0.675 19.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.194 5.194 3 C -0.127 4.127 4 C 0.012 3.988 5 N -0.410 5.410 6 C -0.093 4.093 7 C -0.175 4.175 8 C 0.043 3.957 9 C -0.559 4.559 10 H 0.065 0.935 11 C -0.197 4.197 12 N -0.573 5.573 13 Si 0.793 3.207 14 H -0.192 1.192 15 H -0.205 1.205 16 H -0.191 1.191 17 C 0.285 3.715 18 O -0.497 6.497 19 H 0.096 0.904 20 H 0.146 0.854 21 H 0.085 0.915 22 H 0.220 0.780 23 H 0.241 0.759 24 H 0.235 0.765 25 H 0.154 0.846 26 H 0.033 0.967 27 H 0.007 0.993 28 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.954 17.860 -0.719 18.840 hybrid contribution 0.453 -0.695 0.608 1.029 sum -5.501 17.165 -0.111 18.025 Atomic orbital electron populations 1.22232 0.75846 1.05400 1.04205 1.44929 1.09761 1.05581 1.59168 1.21341 0.91765 0.89853 1.09724 1.16820 0.90701 0.87300 1.03980 1.41894 1.08926 1.02690 1.87494 1.21132 1.00920 0.90385 0.96817 1.21095 0.92909 0.97946 1.05528 1.17700 0.92869 0.88799 0.96296 1.21332 1.35291 1.06682 0.92627 0.93546 1.25969 0.95119 0.96510 1.02136 1.70099 1.38635 1.15392 1.33130 0.85346 0.78384 0.78066 0.78911 1.19151 1.20512 1.19074 1.17074 0.89269 0.83580 0.81564 1.90864 1.70295 1.31905 1.56613 0.90400 0.85407 0.91542 0.78019 0.75888 0.76511 0.84575 0.96681 0.99325 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.53 10.36 127.77 1.32 2.85 15 2 N -0.48 -15.83 2.99 -673.79 -2.02 -17.85 15 3 C 0.00 0.07 10.13 83.49 0.85 0.91 15 4 C 0.12 3.11 6.73 37.81 0.25 3.37 15 5 N -0.86 -14.02 9.12 -51.70 -0.47 -14.49 15 6 C -0.07 -2.54 9.59 22.41 0.21 -2.32 15 7 C -0.17 -8.28 5.09 -19.76 -0.10 -8.38 15 8 C 0.08 4.84 4.84 29.10 0.14 4.98 15 9 C -0.52 -32.85 9.09 25.60 0.23 -32.62 15 10 H 0.05 2.90 7.74 -2.91 -0.02 2.88 15 11 C 0.00 0.00 5.46 84.66 0.46 0.46 15 12 N -0.93 -60.14 13.29 21.45 0.28 -59.85 15 13 Si 0.97 47.56 29.54 68.60 2.03 49.59 15 14 H -0.27 -12.71 7.11 99.48 0.71 -12.01 15 15 H -0.28 -13.46 7.11 99.48 0.71 -12.75 15 16 H -0.27 -12.18 7.11 99.48 0.71 -11.47 15 17 C 0.48 22.91 7.39 84.81 0.63 23.54 15 18 O -0.61 -34.78 15.83 -5.68 -0.09 -34.87 15 19 H 0.08 1.70 8.14 -2.39 -0.02 1.68 15 20 H 0.13 1.67 8.02 -2.39 -0.02 1.65 15 21 H 0.07 1.92 7.38 -2.39 -0.02 1.90 15 22 H 0.20 2.52 8.04 -2.92 -0.02 2.49 15 23 H 0.41 3.93 8.84 -92.71 -0.82 3.11 15 24 H 0.41 5.85 8.86 -92.71 -0.82 5.03 15 25 H 0.14 4.71 8.06 -2.91 -0.02 4.69 15 26 H 0.01 0.90 8.06 -2.38 -0.02 0.88 15 27 H -0.01 -0.79 7.75 -2.39 -0.02 -0.81 15 28 H 0.27 15.87 8.31 -92.71 -0.77 15.10 15 Total: -1.00 -85.58 249.96 3.28 -82.30 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: -0.45 Total: 2.39 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: 4.00 Total: -7.21 kcal Atomic # 7 Polarization: -89.99 SS G_CDS: -2.20 Total: -92.19 kcal Atomic # 8 Polarization: -34.78 SS G_CDS: -0.09 Total: -34.87 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 2.03 Total: 49.59 kcal Total: -85.58 3.28 -82.30 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261296007.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.342 kcal (2) G-P(sol) polarization free energy of solvation -85.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds