Wall clock time and date at job start Mon Mar 30 2020 02:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38252 * 120.00296 * 2 1 4 4 C 1.38213 * 120.00049 * 180.02562 * 3 2 1 5 5 C 1.38258 * 119.99978 * 359.95126 * 4 3 2 6 6 C 1.38211 * 120.00033 * 0.02562 * 5 4 3 7 7 C 1.50705 * 119.99874 * 180.02562 * 6 5 4 8 8 C 1.52998 * 109.46576 * 164.39873 * 7 6 5 9 9 F 1.39896 * 109.46905 * 44.39935 * 7 6 5 10 10 C 1.50696 * 109.47386 * 284.39467 * 7 6 5 11 11 H 1.07998 * 119.99923 * 355.02635 * 10 7 6 12 12 C 1.37868 * 119.99979 * 175.02197 * 10 7 6 13 13 N 1.31521 * 120.00290 * 0.02562 * 12 10 7 14 14 Si 1.86799 * 120.00297 * 180.02562 * 12 10 7 15 15 H 1.48506 * 109.47130 * 59.99758 * 14 12 10 16 16 H 1.48497 * 109.47559 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47207 * 300.00421 * 14 12 10 18 18 C 1.38223 * 119.99563 * 179.72548 * 2 1 3 19 19 H 1.09005 * 109.47174 * 89.99663 * 1 2 3 20 20 H 1.08992 * 109.47634 * 210.00208 * 1 2 3 21 21 H 1.08999 * 109.46595 * 330.00750 * 1 2 3 22 22 H 1.08003 * 119.99961 * 359.97438 * 3 2 1 23 23 H 1.08006 * 119.99980 * 179.97438 * 4 3 2 24 24 H 1.08008 * 120.00120 * 180.02562 * 5 4 3 25 25 H 1.08999 * 109.47806 * 60.00232 * 8 7 6 26 26 H 1.09004 * 109.46866 * 180.02562 * 8 7 6 27 27 H 1.08998 * 109.47321 * 299.99821 * 8 7 6 28 28 H 0.96996 * 120.00270 * 179.97438 * 13 12 10 29 29 H 1.08001 * 119.99912 * 359.97438 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 -0.0002 -0.0001 6 6 3.5806 -1.1971 0.0004 7 6 4.3341 -2.5023 0.0015 8 6 3.3856 -3.6382 0.3898 9 9 5.3830 -2.4343 0.9247 10 6 4.8917 -2.7616 -1.3742 11 1 4.6513 -2.0946 -2.1889 12 6 5.7088 -3.8503 -1.5929 13 7 6.0013 -4.6628 -0.6009 14 14 6.4006 -4.1715 -3.2981 15 1 7.2256 -3.0124 -3.7239 16 1 7.2433 -5.3938 -3.2683 17 1 5.2835 -4.3629 -4.2575 18 6 2.1980 -1.1971 0.0057 19 1 -0.3634 0.0001 -1.0277 20 1 -0.3634 -0.8899 0.5138 21 1 -0.3632 0.8901 0.5137 22 1 1.6584 2.1326 -0.0004 23 1 4.1205 2.1325 -0.0010 24 1 5.3518 -0.0003 -0.0001 25 1 2.5683 -3.6912 -0.3294 26 1 3.9307 -4.5822 0.3911 27 1 2.9823 -3.4507 1.3849 28 1 6.5759 -5.4290 -0.7548 29 1 1.6579 -2.1323 0.0106 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261307629.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:42 Heat of formation + Delta-G solvation = -54.224796 kcal Electronic energy + Delta-G solvation = -13521.705414 eV Core-core repulsion = 11129.911026 eV Total energy + Delta-G solvation = -2391.794388 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -47.75994 -40.13391 -35.73524 -33.78469 -33.09818 -29.83443 -28.01128 -27.16468 -24.45640 -22.25452 -21.02657 -18.72524 -17.75285 -16.79209 -16.29850 -15.86762 -15.51394 -14.92752 -14.84705 -14.45165 -13.93857 -13.62286 -13.27534 -13.02027 -12.95446 -12.76375 -12.63048 -12.51310 -12.39235 -12.23311 -11.78772 -11.08156 -10.87034 -10.66703 -9.60468 -9.38114 -8.20104 -6.46569 0.56567 0.59122 1.38706 1.41103 1.49363 2.35594 2.96624 3.06221 3.93656 4.05795 4.14353 4.34837 4.58726 4.59612 4.67218 4.75092 4.85238 4.88373 4.91768 5.05673 5.25589 5.35777 5.48046 5.53996 5.63289 5.73697 5.88986 5.97780 6.09528 6.26432 6.59759 7.29835 8.82247 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.040129 B = 0.009889 C = 0.009732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.585992 B = 2830.740071 C = 2876.549428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.095 4.095 3 C -0.132 4.132 4 C -0.119 4.119 5 C -0.135 4.135 6 C -0.099 4.099 7 C 0.255 3.745 8 C -0.143 4.143 9 F -0.246 7.246 10 C -0.568 4.568 11 H 0.058 0.942 12 C 0.029 3.971 13 N -0.899 5.899 14 Si 0.965 3.035 15 H -0.272 1.272 16 H -0.278 1.278 17 H -0.264 1.264 18 C -0.132 4.132 19 H 0.078 0.922 20 H 0.068 0.932 21 H 0.085 0.915 22 H 0.154 0.846 23 H 0.144 0.856 24 H 0.099 0.901 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.038 0.962 28 H 0.267 0.733 29 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.077 8.442 -0.142 12.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.095 4.095 3 C -0.149 4.149 4 C -0.137 4.137 5 C -0.154 4.154 6 C -0.099 4.099 7 C 0.238 3.762 8 C -0.201 4.201 9 F -0.227 7.227 10 C -0.606 4.606 11 H 0.076 0.924 12 C -0.174 4.174 13 N -0.535 5.535 14 Si 0.789 3.211 15 H -0.197 1.197 16 H -0.203 1.203 17 H -0.189 1.189 18 C -0.149 4.149 19 H 0.097 0.903 20 H 0.087 0.913 21 H 0.104 0.896 22 H 0.171 0.829 23 H 0.162 0.838 24 H 0.118 0.882 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.952 8.265 -0.050 12.184 hybrid contribution 1.038 -0.618 -0.629 1.362 sum -7.914 7.647 -0.679 11.026 Atomic orbital electron populations 1.20800 0.88630 1.03706 1.03109 1.20305 0.97808 0.92428 0.98940 1.21322 0.93736 0.98376 1.01516 1.21357 0.95176 0.97306 0.99859 1.21023 0.99611 0.93019 1.01699 1.20744 0.95169 0.95740 0.98253 1.17521 0.81975 0.90042 0.86710 1.22120 0.98760 1.00575 0.98652 1.92684 1.62759 1.97314 1.69915 1.21535 1.32800 1.11732 0.94510 0.92394 1.25858 0.95449 0.94895 1.01174 1.70100 1.35642 1.14792 1.32974 0.85513 0.78615 0.77696 0.79255 1.19737 1.20283 1.18852 1.21175 0.92767 0.99001 1.02005 0.90326 0.91311 0.89590 0.82871 0.83783 0.88232 0.91838 0.92340 0.94259 0.92411 0.85624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.26 10.01 71.24 0.71 -1.55 15 2 C -0.09 -2.92 5.88 -19.86 -0.12 -3.03 15 3 C -0.13 -3.77 9.70 22.27 0.22 -3.56 15 4 C -0.12 -3.91 10.05 22.27 0.22 -3.69 15 5 C -0.14 -5.77 9.38 22.27 0.21 -5.56 15 6 C -0.10 -4.55 4.87 -19.86 -0.10 -4.65 15 7 C 0.26 13.74 1.02 -12.29 -0.01 13.73 15 8 C -0.14 -7.08 7.57 71.98 0.55 -6.54 15 9 F -0.25 -14.69 15.70 44.97 0.71 -13.98 15 10 C -0.57 -32.50 8.20 25.60 0.21 -32.29 15 11 H 0.06 3.29 7.74 -2.91 -0.02 3.27 15 12 C 0.03 1.62 5.27 84.65 0.45 2.07 15 13 N -0.90 -53.06 11.16 21.45 0.24 -52.82 15 14 Si 0.97 43.95 29.54 68.60 2.03 45.98 15 15 H -0.27 -12.20 7.11 99.48 0.71 -11.50 15 16 H -0.28 -12.22 7.11 99.48 0.71 -11.51 15 17 H -0.26 -11.48 7.11 99.48 0.71 -10.77 15 18 C -0.13 -5.09 8.75 22.27 0.19 -4.90 15 19 H 0.08 1.52 8.14 -2.38 -0.02 1.50 15 20 H 0.07 1.41 8.08 -2.39 -0.02 1.39 15 21 H 0.09 1.42 8.09 -2.39 -0.02 1.40 15 22 H 0.15 3.11 8.06 -2.91 -0.02 3.09 15 23 H 0.14 3.74 8.06 -2.91 -0.02 3.71 15 24 H 0.10 4.52 7.99 -2.91 -0.02 4.50 15 25 H 0.06 2.85 6.84 -2.39 -0.02 2.84 15 26 H 0.06 3.18 6.48 -2.39 -0.02 3.16 15 27 H 0.04 1.75 8.11 -2.39 -0.02 1.73 15 28 H 0.27 14.83 8.31 -92.71 -0.77 14.06 15 29 H 0.13 4.64 5.96 -2.91 -0.02 4.62 15 Total: -1.00 -65.96 250.28 6.63 -59.33 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 1.13 Total: 11.48 kcal Atomic # 6 Polarization: -52.51 SS G_CDS: 2.53 Total: -49.97 kcal Atomic # 7 Polarization: -53.06 SS G_CDS: 0.24 Total: -52.82 kcal Atomic # 9 Polarization: -14.69 SS G_CDS: 0.71 Total: -13.98 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -65.96 6.63 -59.33 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261307629.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.104 kcal (2) G-P(sol) polarization free energy of solvation -65.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds