Wall clock time and date at job start Mon Mar 30 2020 02:23:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86793 * 120.00306 * 2 1 4 4 H 1.48499 * 109.47279 * 270.00213 * 3 2 1 5 5 H 1.48509 * 109.47107 * 30.00378 * 3 2 1 6 6 H 1.48499 * 109.47193 * 149.99905 * 3 2 1 7 7 C 1.37878 * 119.99765 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00112 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00246 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.47223 * 180.02562 * 9 7 2 11 11 N 1.29194 * 126.02562 * 270.00168 * 10 9 7 12 12 N 1.29100 * 110.27433 * 179.90943 * 11 10 9 13 13 C 1.32700 * 108.62766 * 359.97076 * 12 11 10 14 14 C 1.34113 * 126.02446 * 90.00285 * 10 9 7 15 15 C 1.50583 * 130.15526 * 0.21290 * 14 10 9 16 16 C 1.53583 * 107.83356 * 164.28520 * 15 14 10 17 17 N 1.47091 * 109.61355 * 48.95605 * 16 15 14 18 18 C 1.47358 * 111.56689 * 288.66847 * 17 16 15 19 19 H 0.96996 * 119.99946 * 359.97438 * 1 2 3 20 20 H 1.09005 * 109.46639 * 60.00495 * 9 7 2 21 21 H 1.08994 * 109.47506 * 300.00502 * 9 7 2 22 22 H 1.09002 * 109.79685 * 283.88684 * 15 14 10 23 23 H 1.09003 * 109.79722 * 44.68548 * 15 14 10 24 24 H 1.09003 * 109.43666 * 169.06025 * 16 15 14 25 25 H 1.09004 * 109.43956 * 288.93150 * 16 15 14 26 26 H 1.00903 * 111.00315 * 53.03310 * 17 16 15 27 27 H 1.08994 * 109.71055 * 291.54803 * 18 17 16 28 28 H 1.09007 * 109.74440 * 170.93832 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 7 2.6967 -4.1903 -1.0454 12 7 3.5056 -5.1335 -0.6949 13 6 3.5503 -5.1828 0.6304 14 6 2.7155 -4.2123 1.0841 15 6 2.4784 -3.9417 2.5464 16 6 2.9948 -5.1520 3.3384 17 7 4.3514 -5.4960 2.8858 18 6 4.3381 -6.0904 1.5375 19 1 -0.4850 0.8400 0.0004 20 1 0.6240 -2.5567 -0.8904 21 1 0.6246 -2.5572 0.8896 22 1 3.0193 -3.0449 2.8483 23 1 1.4121 -3.8086 2.7290 24 1 3.0165 -4.9080 4.4005 25 1 2.3317 -6.0018 3.1756 26 1 4.9590 -4.6912 2.9201 27 1 3.8675 -7.0729 1.5735 28 1 5.3588 -6.1851 1.1667 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261309943.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:17 Heat of formation + Delta-G solvation = 86.481995 kcal Electronic energy + Delta-G solvation = -13568.491223 eV Core-core repulsion = 11235.011052 eV Total energy + Delta-G solvation = -2333.480171 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.61664 -37.30088 -34.60498 -32.66492 -30.67782 -29.80560 -27.82514 -24.37204 -23.91100 -22.85350 -20.44105 -19.70977 -17.11939 -16.31087 -15.88937 -15.13840 -14.71384 -14.42291 -13.70382 -13.34834 -13.08412 -12.74284 -12.28920 -11.99747 -11.58789 -11.31247 -11.14132 -11.04229 -10.71283 -10.47729 -10.17400 -10.06177 -9.00410 -8.82702 -8.61334 -8.21853 -6.46573 -4.55548 2.40378 3.11422 3.14825 3.18257 3.21110 3.44182 4.14762 4.34116 4.79513 4.89748 5.02445 5.13749 5.29894 5.54869 5.70713 5.82794 5.92156 6.06208 6.16558 6.27473 6.69603 6.74184 6.92133 7.07856 7.37866 7.40193 7.57220 7.60490 8.48233 9.12259 9.31392 10.62419 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.041926 B = 0.009294 C = 0.008652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.679141 B = 3012.124086 C = 3235.552360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.070 3.930 3 Si 0.912 3.088 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.271 1.271 7 C -0.545 4.545 8 H 0.066 0.934 9 C 0.240 3.760 10 N -0.236 5.236 11 N -0.102 5.102 12 N -0.285 5.285 13 C -0.085 4.085 14 C -0.024 4.024 15 C -0.077 4.077 16 C 0.063 3.937 17 N -0.681 5.681 18 C 0.152 3.848 19 H 0.271 0.729 20 H 0.064 0.936 21 H 0.060 0.940 22 H 0.086 0.914 23 H 0.084 0.916 24 H 0.086 0.914 25 H 0.075 0.925 26 H 0.345 0.655 27 H 0.086 0.914 28 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.974 -6.265 7.364 10.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.134 4.134 3 Si 0.738 3.262 4 H -0.200 1.200 5 H -0.206 1.206 6 H -0.196 1.196 7 C -0.583 4.583 8 H 0.084 0.916 9 C 0.123 3.877 10 N -0.027 5.027 11 N -0.080 5.080 12 N -0.147 5.147 13 C -0.230 4.230 14 C -0.162 4.162 15 C -0.118 4.118 16 C -0.067 4.067 17 N -0.308 5.308 18 C 0.020 3.980 19 H 0.081 0.919 20 H 0.082 0.918 21 H 0.078 0.922 22 H 0.104 0.896 23 H 0.102 0.898 24 H 0.104 0.896 25 H 0.094 0.906 26 H 0.162 0.838 27 H 0.104 0.896 28 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.792 -6.763 6.082 9.854 hybrid contribution -0.104 2.059 0.376 2.096 sum 3.688 -4.704 6.459 8.800 Atomic orbital electron populations 1.69905 1.06106 1.28165 1.48164 1.24915 0.95035 0.99631 0.93860 0.86258 0.79601 0.81624 0.78700 1.20024 1.20622 1.19578 1.21119 0.93692 0.89085 1.54428 0.91601 1.20105 0.86334 0.80417 1.00874 1.47680 1.28689 1.23183 1.03120 1.78558 1.10709 1.06315 1.12390 1.74625 1.14835 1.13778 1.11482 1.22554 1.05022 1.02749 0.92670 1.21623 1.02549 0.99152 0.92882 1.20866 1.03309 1.00326 0.87329 1.22142 0.89783 0.96102 0.98685 1.60871 1.10522 1.35533 1.23909 1.20273 0.98839 0.95121 0.83775 0.91882 0.91843 0.92206 0.89596 0.89755 0.89551 0.90613 0.83773 0.89597 0.89390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.04 13.29 55.43 0.74 -23.31 15 2 C 0.07 1.85 5.46 -17.82 -0.10 1.75 15 3 Si 0.91 20.43 29.54 -169.99 -5.02 15.41 15 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 15 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 15 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 15 7 C -0.54 -14.54 9.39 -34.44 -0.32 -14.86 15 8 H 0.07 1.82 7.81 -52.48 -0.41 1.41 15 9 C 0.24 5.95 6.02 -5.19 -0.03 5.92 15 10 N -0.24 -5.51 3.31 -58.42 -0.19 -5.70 15 11 N -0.10 -2.49 13.20 60.35 0.80 -1.69 15 12 N -0.28 -6.41 12.39 33.17 0.41 -6.00 15 13 C -0.09 -1.64 7.21 -83.15 -0.60 -2.24 15 14 C -0.02 -0.49 6.83 -82.52 -0.56 -1.05 15 15 C -0.08 -1.20 6.14 -27.64 -0.17 -1.37 15 16 C 0.06 0.77 6.56 -3.42 -0.02 0.75 15 17 N -0.68 -8.61 6.87 -114.29 -0.79 -9.39 15 18 C 0.15 2.17 6.96 -4.79 -0.03 2.14 15 19 H 0.27 6.92 8.31 -40.82 -0.34 6.58 15 20 H 0.06 1.66 8.14 -51.93 -0.42 1.24 15 21 H 0.06 1.45 7.86 -51.93 -0.41 1.04 15 22 H 0.09 1.33 8.14 -51.93 -0.42 0.91 15 23 H 0.08 1.27 7.99 -51.93 -0.42 0.86 15 24 H 0.09 0.85 8.14 -51.93 -0.42 0.43 15 25 H 0.08 0.91 8.08 -51.93 -0.42 0.50 15 26 H 0.34 4.20 8.79 -39.29 -0.35 3.86 15 27 H 0.09 1.14 8.14 -51.93 -0.42 0.72 15 28 H 0.09 1.16 8.14 -51.93 -0.42 0.74 15 LS Contribution 244.02 15.07 3.68 3.68 Total: -1.00 -29.34 244.02 -5.46 -34.80 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -3.25 Total: 1.16 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: -1.84 Total: -8.97 kcal Atomic # 7 Polarization: -47.05 SS G_CDS: 0.97 Total: -46.09 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -29.34 -5.46 -34.80 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261309943.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.284 kcal (2) G-P(sol) polarization free energy of solvation -29.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds