Wall clock time and date at job start Mon Mar 30 2020 02:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38264 * 120.00040 * 2 1 4 4 C 1.38214 * 119.99702 * 179.97438 * 3 2 1 5 5 C 1.38248 * 120.00552 * 359.97438 * 4 3 2 6 6 C 1.38214 * 119.99480 * 359.74581 * 5 4 3 7 7 C 1.38211 * 120.00061 * 179.97438 * 2 1 3 8 8 C 1.50697 * 120.00008 * 0.02562 * 7 2 1 9 9 H 1.09006 * 109.47193 * 354.80023 * 8 7 2 10 10 C 1.50707 * 109.47203 * 234.80560 * 8 7 2 11 11 H 1.07998 * 119.99691 * 355.81927 * 10 8 7 12 12 C 1.37872 * 119.99869 * 175.82132 * 10 8 7 13 13 N 1.31512 * 120.00485 * 354.87717 * 12 10 8 14 14 Si 1.86799 * 119.99834 * 174.87857 * 12 10 8 15 15 H 1.48499 * 109.47048 * 265.05202 * 14 12 10 16 16 H 1.48501 * 109.47384 * 25.04698 * 14 12 10 17 17 H 1.48500 * 109.47260 * 145.04944 * 14 12 10 18 18 C 1.53000 * 109.47245 * 114.80603 * 8 7 2 19 19 F 1.39900 * 109.46659 * 294.54063 * 18 8 7 20 20 H 1.08995 * 109.47007 * 265.01499 * 1 2 3 21 21 H 1.08999 * 109.46717 * 25.01637 * 1 2 3 22 22 H 1.09000 * 109.46941 * 145.01126 * 1 2 3 23 23 H 1.07997 * 119.99799 * 359.97438 * 3 2 1 24 24 H 1.08001 * 119.99562 * 180.02562 * 4 3 2 25 25 H 1.07998 * 120.00373 * 180.02562 * 5 4 3 26 26 H 1.08005 * 119.99986 * 180.28061 * 6 5 4 27 27 H 0.96999 * 120.00496 * 179.97438 * 13 12 10 28 28 H 1.08990 * 109.47231 * 54.53688 * 18 8 7 29 29 H 1.08997 * 109.46819 * 174.54348 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2718 0.0001 0.0016 6 6 3.5806 -1.1968 0.0075 7 6 2.1981 -1.1969 0.0005 8 6 1.4446 -2.5020 0.0005 9 1 0.3765 -2.3050 0.0932 10 6 1.9022 -3.3463 1.1620 11 1 2.7092 -3.0045 1.7931 12 6 1.2905 -4.5549 1.4189 13 7 0.2435 -4.9249 0.7145 14 14 1.9490 -5.6669 2.7677 15 1 2.8779 -6.6640 2.1777 16 1 2.6741 -4.8494 3.7733 17 1 0.8186 -6.3713 3.4245 18 6 1.7142 -3.2466 -1.3086 19 9 1.1780 -2.5201 -2.3771 20 1 -0.3633 -0.0893 1.0237 21 1 -0.3633 0.9313 -0.4346 22 1 -0.3633 -0.8419 -0.5893 23 1 1.6583 2.1327 -0.0004 24 1 4.1205 2.1326 0.0010 25 1 5.3517 0.0000 0.0024 26 1 4.1206 -2.1322 0.0129 27 1 -0.1867 -5.7754 0.8949 28 1 2.7893 -3.3581 -1.4483 29 1 1.2488 -4.2314 -1.2689 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261335293.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:50 Heat of formation + Delta-G solvation = -48.243824 kcal Electronic energy + Delta-G solvation = -13551.185269 eV Core-core repulsion = 11159.650235 eV Total energy + Delta-G solvation = -2391.535034 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -46.32589 -38.78092 -34.21443 -32.17214 -31.25778 -28.13579 -26.08556 -24.79805 -22.70170 -20.80805 -19.44842 -16.55824 -15.94687 -14.91619 -14.80860 -14.20579 -14.13820 -14.05036 -13.39805 -12.87115 -12.51997 -12.33004 -11.84273 -11.67468 -11.40741 -11.04555 -10.92682 -10.51082 -10.45370 -10.04621 -9.75971 -9.47275 -9.20111 -8.47759 -8.05847 -7.70607 -6.19550 -4.24649 2.08297 2.16149 3.22227 3.30300 3.34042 4.29880 4.52743 5.12036 5.47240 5.53382 5.66129 5.80909 5.99998 6.15423 6.22524 6.29299 6.39767 6.47512 6.54929 6.63004 6.84736 6.87621 7.09781 7.14720 7.31781 7.38909 7.70528 7.79972 7.87897 8.21886 8.79682 9.40573 10.88579 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.032223 B = 0.011360 C = 0.010185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.734330 B = 2464.168990 C = 2748.372112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.090 4.090 3 C -0.128 4.128 4 C -0.144 4.144 5 C -0.134 4.134 6 C -0.111 4.111 7 C -0.037 4.037 8 C 0.046 3.954 9 H 0.059 0.941 10 C -0.511 4.511 11 H 0.064 0.936 12 C 0.063 3.937 13 N -0.889 5.889 14 Si 0.896 3.104 15 H -0.279 1.279 16 H -0.272 1.272 17 H -0.285 1.285 18 C 0.064 3.936 19 F -0.246 7.246 20 H 0.066 0.934 21 H 0.052 0.948 22 H 0.075 0.925 23 H 0.110 0.890 24 H 0.108 0.892 25 H 0.110 0.890 26 H 0.121 0.879 27 H 0.265 0.735 28 H 0.046 0.954 29 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.343 6.608 -1.293 7.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.090 4.090 3 C -0.146 4.146 4 C -0.162 4.162 5 C -0.152 4.152 6 C -0.129 4.129 7 C -0.037 4.037 8 C 0.027 3.973 9 H 0.077 0.923 10 C -0.549 4.549 11 H 0.082 0.918 12 C -0.140 4.140 13 N -0.526 5.526 14 Si 0.724 3.276 15 H -0.205 1.205 16 H -0.197 1.197 17 H -0.211 1.211 18 C 0.009 3.991 19 F -0.228 7.228 20 H 0.084 0.916 21 H 0.071 0.929 22 H 0.094 0.906 23 H 0.128 0.872 24 H 0.127 0.873 25 H 0.128 0.872 26 H 0.138 0.862 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.190 6.472 -1.330 7.337 hybrid contribution 0.392 -0.645 0.737 1.055 sum 3.582 5.828 -0.593 6.866 Atomic orbital electron populations 1.20781 0.91837 1.01927 1.02216 1.19829 0.95972 0.92738 1.00459 1.20871 0.94159 0.96952 1.02588 1.20854 0.94253 0.97325 1.03767 1.21011 0.98964 0.92912 1.02318 1.21057 0.94325 0.97533 0.99937 1.20328 0.93723 0.95770 0.93837 1.18508 0.97389 0.88177 0.93191 0.92273 1.21037 1.18698 1.03165 1.11995 0.91794 1.25039 0.94434 0.98056 0.96454 1.69921 1.19751 1.22282 1.40683 0.86495 0.78663 0.80638 0.81847 1.20506 1.19680 1.21066 1.22404 0.96786 0.96795 0.83142 1.92618 1.88794 1.81192 1.60202 0.91561 0.92898 0.90584 0.87214 0.87347 0.87232 0.86151 0.92517 0.93574 0.89007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.03 9.17 36.01 0.33 -1.70 15 2 C -0.09 -1.81 5.88 -104.62 -0.62 -2.43 15 3 C -0.13 -2.24 9.68 -39.58 -0.38 -2.63 15 4 C -0.14 -2.40 10.05 -39.59 -0.40 -2.80 15 5 C -0.13 -2.35 10.05 -39.59 -0.40 -2.75 15 6 C -0.11 -2.25 8.47 -39.58 -0.34 -2.59 15 7 C -0.04 -0.81 4.61 -104.63 -0.48 -1.29 15 8 C 0.05 1.13 1.87 -92.92 -0.17 0.95 15 9 H 0.06 1.56 5.69 -51.93 -0.30 1.26 15 10 C -0.51 -13.41 8.07 -34.44 -0.28 -13.69 15 11 H 0.06 1.68 7.38 -52.49 -0.39 1.29 15 12 C 0.06 1.65 5.22 -17.82 -0.09 1.56 15 13 N -0.89 -24.35 11.86 55.43 0.66 -23.69 15 14 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 15 15 H -0.28 -6.29 7.11 56.52 0.40 -5.89 15 16 H -0.27 -6.19 7.11 56.52 0.40 -5.79 15 17 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 18 C 0.06 1.53 6.72 37.16 0.25 1.78 15 19 F -0.25 -5.89 17.19 2.25 0.04 -5.85 15 20 H 0.07 1.18 8.14 -51.93 -0.42 0.76 15 21 H 0.05 0.81 8.05 -51.93 -0.42 0.39 15 22 H 0.08 1.51 6.49 -51.93 -0.34 1.18 15 23 H 0.11 1.62 8.06 -52.49 -0.42 1.20 15 24 H 0.11 1.47 8.06 -52.49 -0.42 1.05 15 25 H 0.11 1.61 8.06 -52.49 -0.42 1.19 15 26 H 0.12 2.41 7.73 -52.48 -0.41 2.01 15 27 H 0.26 6.91 8.31 -40.82 -0.34 6.57 15 28 H 0.05 1.04 7.56 -51.93 -0.39 0.64 15 29 H 0.09 2.35 6.50 -51.93 -0.34 2.02 15 LS Contribution 249.74 15.07 3.76 3.76 Total: -1.00 -27.60 249.74 -6.54 -34.14 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -3.40 Total: 1.78 kcal Atomic # 6 Polarization: -23.00 SS G_CDS: -2.58 Total: -25.58 kcal Atomic # 7 Polarization: -24.35 SS G_CDS: 0.66 Total: -23.69 kcal Atomic # 9 Polarization: -5.89 SS G_CDS: 0.04 Total: -5.85 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -27.60 -6.54 -34.14 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261335293.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.106 kcal (2) G-P(sol) polarization free energy of solvation -27.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds