Wall clock time and date at job start Mon Mar 30 2020 02:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47337 * 2 1 4 4 C 1.50708 * 109.46934 * 240.00285 * 2 1 3 5 5 H 1.08004 * 120.00055 * 240.00502 * 4 2 1 6 6 C 1.37873 * 120.00068 * 59.99839 * 4 2 1 7 7 N 1.31513 * 120.00290 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00078 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46804 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47030 * 120.00139 * 8 6 4 11 11 H 1.48500 * 109.47197 * 240.00357 * 8 6 4 12 12 C 1.50699 * 109.47089 * 120.00547 * 2 1 3 13 13 C 1.38219 * 120.00977 * 239.99414 * 12 2 1 14 14 C 1.38227 * 120.02402 * 179.74165 * 13 12 2 15 15 C 1.38262 * 120.05195 * 0.25898 * 14 13 12 16 16 C 1.38177 * 120.02487 * 359.97438 * 15 14 13 17 17 C 1.38438 * 120.01661 * 60.25185 * 12 2 1 18 18 F 1.35104 * 120.02404 * 359.97438 * 17 12 2 19 19 H 1.09001 * 109.46998 * 299.99917 * 1 2 3 20 20 H 1.09004 * 109.46878 * 59.99777 * 1 2 3 21 21 H 1.08997 * 109.47364 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47351 * 179.97438 * 3 2 1 23 23 H 1.09004 * 109.47318 * 299.99953 * 3 2 1 24 24 H 1.09001 * 109.47009 * 60.00090 * 3 2 1 25 25 H 0.96998 * 120.00654 * 179.97438 * 7 6 4 26 26 H 1.08002 * 119.99072 * 0.02773 * 13 12 2 27 27 H 1.07998 * 119.97011 * 180.23492 * 14 13 12 28 28 H 1.08004 * 119.99089 * 179.97438 * 15 14 13 29 29 H 1.07999 * 120.01221 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3224 -1.1194 -4.0081 9 1 3.1473 -2.2862 -3.6039 10 1 1.1677 -1.5864 -4.8166 11 1 3.1472 -0.1856 -4.8162 12 6 2.0323 -0.7105 1.2304 13 6 2.8271 -0.0391 2.1403 14 6 3.2836 -0.6890 3.2717 15 6 2.9503 -2.0127 3.4918 16 6 2.1599 -2.6873 2.5811 17 6 1.7024 -2.0374 1.4470 18 9 0.9295 -2.6961 0.5559 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 3.1300 1.4424 0.0005 23 1 1.6767 1.9563 -0.8900 24 1 1.6767 1.9562 0.8900 25 1 0.7094 1.1619 -3.4844 26 1 3.0877 0.9950 1.9697 27 1 3.9014 -0.1624 3.9840 28 1 3.3079 -2.5196 4.3759 29 1 1.8994 -3.7211 2.7534 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261507688.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:05 Heat of formation + Delta-G solvation = -27.980565 kcal Electronic energy + Delta-G solvation = -13833.856880 eV Core-core repulsion = 11443.200527 eV Total energy + Delta-G solvation = -2390.656353 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -47.90844 -38.58222 -35.30799 -31.64297 -29.92496 -28.57280 -25.87037 -25.15910 -22.43410 -21.56250 -19.05186 -16.90852 -16.17323 -15.38823 -15.05322 -14.56572 -14.41917 -13.42792 -13.22975 -12.84203 -12.19256 -11.79437 -11.65194 -11.41205 -11.18731 -10.91601 -10.65965 -10.61701 -10.39712 -10.16228 -9.58765 -9.34192 -8.91925 -8.33518 -8.24929 -7.74461 -5.96340 -4.05323 1.84490 1.95100 3.30527 3.38585 3.44095 4.28463 4.47152 5.07432 5.29559 5.36677 5.45718 5.68690 5.88802 6.07141 6.49749 6.63302 6.71026 6.75175 6.84860 6.92594 6.98537 7.06155 7.22909 7.35476 7.61667 7.61915 7.78147 8.05738 8.17197 8.42805 8.92872 9.59041 11.05098 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.038943 B = 0.011951 C = 0.010861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.827340 B = 2342.347531 C = 2577.446559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.096 3.904 3 C -0.132 4.132 4 C -0.493 4.493 5 H 0.055 0.945 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.892 3.108 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.284 1.284 12 C -0.064 4.064 13 C -0.107 4.107 14 C -0.140 4.140 15 C -0.122 4.122 16 C -0.167 4.167 17 C 0.104 3.896 18 F -0.130 7.130 19 H 0.007 0.993 20 H 0.088 0.912 21 H 0.035 0.965 22 H 0.029 0.971 23 H 0.088 0.912 24 H 0.012 0.988 25 H 0.259 0.741 26 H 0.130 0.870 27 H 0.116 0.884 28 H 0.118 0.882 29 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.282 -2.234 8.383 8.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.096 3.904 3 C -0.190 4.190 4 C -0.531 4.531 5 H 0.073 0.927 6 C -0.135 4.135 7 N -0.527 5.527 8 Si 0.720 3.280 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.211 1.211 12 C -0.065 4.065 13 C -0.125 4.125 14 C -0.158 4.158 15 C -0.140 4.140 16 C -0.186 4.186 17 C 0.084 3.916 18 F -0.108 7.108 19 H 0.027 0.973 20 H 0.107 0.893 21 H 0.055 0.945 22 H 0.048 0.952 23 H 0.106 0.894 24 H 0.031 0.969 25 H 0.069 0.931 26 H 0.148 0.852 27 H 0.134 0.866 28 H 0.136 0.864 29 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.169 -2.152 8.195 8.746 hybrid contribution 0.248 -0.656 -0.963 1.191 sum 2.417 -2.808 7.231 8.125 Atomic orbital electron populations 1.21862 0.96790 1.00029 1.00376 1.17243 0.92804 0.92142 0.88239 1.21888 0.98470 0.97987 1.00608 1.21011 1.30974 1.11638 0.89503 0.92708 1.24864 0.94963 0.94971 0.98732 1.69812 1.36952 1.22854 1.23066 0.86527 0.78664 0.79747 0.83069 1.19840 1.21001 1.21062 1.20834 0.95503 0.92427 0.97695 1.21168 0.97402 1.00563 0.93385 1.21079 1.01532 0.94984 0.98198 1.20713 0.99442 0.94857 0.99013 1.21038 1.02049 1.00439 0.95075 1.17623 0.94614 0.91043 0.88271 1.91474 1.72158 1.80329 1.66846 0.97346 0.89323 0.94544 0.95160 0.89373 0.96864 0.93072 0.85196 0.86580 0.86392 0.86000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.29 8.04 37.16 0.30 -2.99 15 2 C 0.10 2.37 0.49 -156.81 -0.08 2.30 15 3 C -0.13 -3.10 6.91 37.15 0.26 -2.85 15 4 C -0.49 -13.48 7.03 -34.44 -0.24 -13.72 15 5 H 0.05 1.55 7.59 -52.48 -0.40 1.15 15 6 C 0.07 1.78 5.15 -17.82 -0.09 1.69 15 7 N -0.89 -24.44 9.35 55.43 0.52 -23.92 15 8 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 15 9 H -0.27 -6.62 7.11 56.52 0.40 -6.22 15 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 15 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 15 12 C -0.06 -1.41 4.72 -104.56 -0.49 -1.91 15 13 C -0.11 -2.04 8.97 -39.59 -0.36 -2.39 15 14 C -0.14 -2.23 10.04 -39.58 -0.40 -2.63 15 15 C -0.12 -1.89 10.04 -39.59 -0.40 -2.29 15 16 C -0.17 -2.93 10.03 -39.52 -0.40 -3.33 15 17 C 0.10 2.22 6.69 -39.42 -0.26 1.95 15 18 F -0.13 -3.00 14.39 2.25 0.03 -2.97 15 19 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 15 20 H 0.09 2.36 6.07 -51.93 -0.32 2.04 15 21 H 0.04 0.90 6.33 -51.93 -0.33 0.57 15 22 H 0.03 0.68 7.51 -51.93 -0.39 0.29 15 23 H 0.09 2.27 6.07 -51.93 -0.32 1.96 15 24 H 0.01 0.27 7.51 -51.93 -0.39 -0.12 15 25 H 0.26 6.84 8.31 -40.82 -0.34 6.50 15 26 H 0.13 2.33 5.90 -52.49 -0.31 2.02 15 27 H 0.12 1.48 8.06 -52.49 -0.42 1.06 15 28 H 0.12 1.42 8.06 -52.48 -0.42 1.00 15 29 H 0.12 1.83 8.06 -52.49 -0.42 1.41 15 LS Contribution 240.31 15.07 3.62 3.62 Total: -1.00 -28.08 240.31 -6.28 -34.36 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: -3.27 Total: -1.37 kcal Atomic # 6 Polarization: -24.00 SS G_CDS: -2.16 Total: -26.16 kcal Atomic # 7 Polarization: -24.44 SS G_CDS: 0.52 Total: -23.92 kcal Atomic # 9 Polarization: -3.00 SS G_CDS: 0.03 Total: -2.97 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -28.08 -6.28 -34.36 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261507688.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.383 kcal (2) G-P(sol) polarization free energy of solvation -28.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds