Wall clock time and date at job start Mon Mar 30 2020 02:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47337 * 2 1 4 4 C 1.50708 * 109.46934 * 240.00285 * 2 1 3 5 5 H 1.08004 * 120.00055 * 240.00502 * 4 2 1 6 6 C 1.37873 * 120.00068 * 59.99839 * 4 2 1 7 7 N 1.31513 * 120.00290 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00078 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46804 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47030 * 120.00139 * 8 6 4 11 11 H 1.48500 * 109.47197 * 240.00357 * 8 6 4 12 12 C 1.50699 * 109.47089 * 120.00547 * 2 1 3 13 13 C 1.38219 * 120.00977 * 239.99414 * 12 2 1 14 14 C 1.38227 * 120.02402 * 179.74165 * 13 12 2 15 15 C 1.38262 * 120.05195 * 0.25898 * 14 13 12 16 16 C 1.38177 * 120.02487 * 359.97438 * 15 14 13 17 17 C 1.38438 * 120.01661 * 60.25185 * 12 2 1 18 18 F 1.35104 * 120.02404 * 359.97438 * 17 12 2 19 19 H 1.09001 * 109.46998 * 299.99917 * 1 2 3 20 20 H 1.09004 * 109.46878 * 59.99777 * 1 2 3 21 21 H 1.08997 * 109.47364 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47351 * 179.97438 * 3 2 1 23 23 H 1.09004 * 109.47318 * 299.99953 * 3 2 1 24 24 H 1.09001 * 109.47009 * 60.00090 * 3 2 1 25 25 H 0.96998 * 120.00654 * 179.97438 * 7 6 4 26 26 H 1.08002 * 119.99072 * 0.02773 * 13 12 2 27 27 H 1.07998 * 119.97011 * 180.23492 * 14 13 12 28 28 H 1.08004 * 119.99089 * 179.97438 * 15 14 13 29 29 H 1.07999 * 120.01221 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3224 -1.1194 -4.0081 9 1 3.1473 -2.2862 -3.6039 10 1 1.1677 -1.5864 -4.8166 11 1 3.1472 -0.1856 -4.8162 12 6 2.0323 -0.7105 1.2304 13 6 2.8271 -0.0391 2.1403 14 6 3.2836 -0.6890 3.2717 15 6 2.9503 -2.0127 3.4918 16 6 2.1599 -2.6873 2.5811 17 6 1.7024 -2.0374 1.4470 18 9 0.9295 -2.6961 0.5559 19 1 -0.3633 0.5138 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 3.1300 1.4424 0.0005 23 1 1.6767 1.9563 -0.8900 24 1 1.6767 1.9562 0.8900 25 1 0.7094 1.1619 -3.4844 26 1 3.0877 0.9950 1.9697 27 1 3.9014 -0.1624 3.9840 28 1 3.3079 -2.5196 4.3759 29 1 1.8994 -3.7211 2.7534 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261507688.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:04 Heat of formation + Delta-G solvation = -42.571252 kcal Electronic energy + Delta-G solvation = -13834.489580 eV Core-core repulsion = 11443.200527 eV Total energy + Delta-G solvation = -2391.289053 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.54941 -40.06597 -37.07902 -33.56960 -31.33560 -30.15514 -27.74918 -27.23742 -23.98493 -23.00987 -20.82212 -18.51012 -18.00139 -16.95424 -16.86113 -16.23297 -16.02315 -15.00011 -14.85490 -14.62371 -13.80327 -13.55917 -13.37677 -13.04127 -12.92163 -12.76437 -12.55479 -12.34607 -12.18560 -12.08008 -11.47020 -11.11060 -10.84635 -10.38677 -9.66793 -9.26754 -8.02323 -6.17341 0.44446 0.55137 1.37289 1.40433 1.50640 2.43312 2.91240 3.20255 3.67188 4.05594 4.15809 4.30232 4.56109 4.66123 4.80075 4.90613 4.96759 5.07944 5.23596 5.31901 5.40198 5.46378 5.56191 5.59676 5.66238 5.76140 6.09089 6.17144 6.27515 6.42425 6.84601 7.48601 8.96722 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.038943 B = 0.011951 C = 0.010861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.827340 B = 2342.347531 C = 2577.446559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.088 3.912 3 C -0.120 4.120 4 C -0.506 4.506 5 H 0.035 0.965 6 C 0.024 3.976 7 N -0.904 5.904 8 Si 0.944 3.056 9 H -0.277 1.277 10 H -0.282 1.282 11 H -0.276 1.276 12 C -0.099 4.099 13 C -0.118 4.118 14 C -0.126 4.126 15 C -0.107 4.107 16 C -0.164 4.164 17 C 0.065 3.935 18 F -0.153 7.153 19 H 0.022 0.978 20 H 0.064 0.936 21 H 0.024 0.976 22 H 0.031 0.969 23 H 0.061 0.939 24 H 0.034 0.966 25 H 0.260 0.740 26 H 0.135 0.865 27 H 0.158 0.842 28 H 0.165 0.835 29 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.616 -2.665 10.470 11.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.087 3.913 3 C -0.178 4.178 4 C -0.544 4.544 5 H 0.053 0.947 6 C -0.175 4.175 7 N -0.544 5.544 8 Si 0.770 3.230 9 H -0.202 1.202 10 H -0.208 1.208 11 H -0.202 1.202 12 C -0.100 4.100 13 C -0.136 4.136 14 C -0.144 4.144 15 C -0.124 4.124 16 C -0.183 4.183 17 C 0.046 3.954 18 F -0.132 7.132 19 H 0.041 0.959 20 H 0.083 0.917 21 H 0.043 0.957 22 H 0.050 0.950 23 H 0.080 0.920 24 H 0.053 0.947 25 H 0.069 0.931 26 H 0.153 0.847 27 H 0.176 0.824 28 H 0.183 0.817 29 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.504 -2.578 10.285 11.167 hybrid contribution -0.134 -0.544 -1.496 1.597 sum 3.370 -3.122 8.790 9.918 Atomic orbital electron populations 1.21715 0.97591 0.98993 0.99764 1.17196 0.92344 0.92744 0.88977 1.21715 0.98426 0.97386 1.00255 1.21176 1.30818 1.11222 0.91193 0.94669 1.25484 0.95352 0.95707 1.00984 1.69923 1.37441 1.23526 1.23468 0.85726 0.78173 0.78749 0.80328 1.20233 1.20758 1.20179 1.20708 0.98086 0.93232 0.97928 1.21330 0.97174 1.01001 0.94053 1.21543 1.00328 0.95294 0.97264 1.21281 0.97155 0.94609 0.99394 1.21386 1.01467 1.01606 0.93809 1.18071 0.96194 0.91426 0.89721 1.91404 1.73076 1.80691 1.67989 0.95879 0.91720 0.95722 0.94962 0.92045 0.94696 0.93051 0.84703 0.82399 0.81718 0.83672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.25 8.04 71.98 0.58 -5.67 15 2 C 0.09 4.41 0.49 -53.67 -0.03 4.38 15 3 C -0.12 -5.69 6.91 71.98 0.50 -5.19 15 4 C -0.51 -28.39 7.03 25.60 0.18 -28.21 15 5 H 0.03 2.06 7.59 -2.91 -0.02 2.03 15 6 C 0.02 1.31 5.15 84.65 0.44 1.74 15 7 N -0.90 -50.94 9.35 21.45 0.20 -50.74 15 8 Si 0.94 44.76 29.54 68.60 2.03 46.79 15 9 H -0.28 -13.20 7.11 99.48 0.71 -12.49 15 10 H -0.28 -13.16 7.11 99.48 0.71 -12.46 15 11 H -0.28 -12.64 7.11 99.48 0.71 -11.94 15 12 C -0.10 -4.34 4.72 -19.82 -0.09 -4.44 15 13 C -0.12 -4.21 8.97 22.26 0.20 -4.01 15 14 C -0.13 -3.46 10.04 22.27 0.22 -3.24 15 15 C -0.11 -2.77 10.04 22.26 0.22 -2.54 15 16 C -0.16 -5.30 10.03 22.31 0.22 -5.08 15 17 C 0.06 2.75 6.69 22.37 0.15 2.90 15 18 F -0.15 -7.28 14.39 44.97 0.65 -6.63 15 19 H 0.02 1.04 8.14 -2.39 -0.02 1.02 15 20 H 0.06 3.55 6.07 -2.39 -0.01 3.54 15 21 H 0.02 1.25 6.33 -2.39 -0.02 1.23 15 22 H 0.03 1.45 7.51 -2.39 -0.02 1.43 15 23 H 0.06 3.22 6.07 -2.39 -0.01 3.20 15 24 H 0.03 1.44 7.51 -2.39 -0.02 1.42 15 25 H 0.26 13.98 8.31 -92.71 -0.77 13.21 15 26 H 0.14 4.56 5.90 -2.91 -0.02 4.54 15 27 H 0.16 3.03 8.06 -2.91 -0.02 3.00 15 28 H 0.17 2.80 8.06 -2.91 -0.02 2.78 15 29 H 0.15 3.91 8.06 -2.91 -0.02 3.88 15 Total: -1.00 -62.14 240.31 6.61 -55.53 By element: Atomic # 1 Polarization: 3.27 SS G_CDS: 1.14 Total: 4.41 kcal Atomic # 6 Polarization: -51.94 SS G_CDS: 2.59 Total: -49.35 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: 0.20 Total: -50.74 kcal Atomic # 9 Polarization: -7.28 SS G_CDS: 0.65 Total: -6.63 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -62.14 6.61 -55.53 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261507688.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.960 kcal (2) G-P(sol) polarization free energy of solvation -62.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds