Wall clock time and date at job start Mon Mar 30 2020 02:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47262 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46882 * 119.99668 * 8 6 4 11 11 H 1.48493 * 109.47394 * 239.99732 * 8 6 4 12 12 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 13 13 N 1.36604 * 110.99607 * 60.00550 * 12 2 1 14 14 C 1.38997 * 119.99987 * 180.02562 * 13 12 2 15 15 C 1.39337 * 120.09615 * 179.97438 * 14 13 12 16 16 N 1.31925 * 119.89009 * 179.97438 * 15 14 13 17 17 C 1.32273 * 120.08776 * 0.02562 * 16 15 14 18 18 C 1.38162 * 120.19346 * 359.97347 * 17 16 15 19 19 N 1.32251 * 120.10819 * 359.78950 * 18 17 16 20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 22 22 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 23 23 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 24 24 H 1.00898 * 110.99915 * 183.95130 * 12 2 1 25 25 H 0.96992 * 120.00152 * 359.97438 * 13 12 2 26 26 H 1.07997 * 120.05610 * 359.95787 * 15 14 13 27 27 H 1.08000 * 119.90819 * 179.97438 * 17 16 15 28 28 H 1.07998 * 119.94900 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1456 -2.2877 -3.6037 10 1 1.1661 -1.5867 -4.8160 11 1 3.1467 -0.1875 -4.8164 12 7 2.0196 -0.6924 1.1995 13 7 1.5817 -1.9859 1.2310 14 6 1.9363 -2.8141 2.2895 15 6 1.4903 -4.1337 2.3240 16 7 1.8298 -4.9164 3.3302 17 6 2.5918 -4.4497 4.3055 18 6 3.0361 -3.1418 4.2749 19 7 2.7043 -2.3519 3.2674 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 0.5139 0.8900 23 1 0.7089 1.1612 -3.4844 24 1 3.0262 -0.6500 1.2559 25 1 1.0226 -2.3263 0.5152 26 1 0.8675 -4.5152 1.5283 27 1 2.8677 -5.0928 5.1281 28 1 3.6585 -2.7650 5.0730 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306287389.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:07 Heat of formation + Delta-G solvation = 77.570723 kcal Electronic energy + Delta-G solvation = -13234.115270 eV Core-core repulsion = 10900.248677 eV Total energy + Delta-G solvation = -2333.866593 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.47193 -37.36949 -34.03799 -33.19194 -31.62241 -29.18731 -26.89126 -25.31846 -24.03971 -22.81766 -20.30233 -17.81966 -17.24690 -16.51335 -16.35898 -15.31087 -14.92537 -14.39467 -14.25198 -13.41117 -12.79324 -12.36815 -11.89425 -11.58770 -11.20151 -11.03534 -11.01092 -10.53013 -10.50011 -10.36922 -10.16630 -9.47384 -8.70542 -8.59575 -8.46481 -6.69836 -6.19817 -4.40099 1.37795 1.75954 3.13165 3.22818 3.25710 3.47966 4.21193 4.24230 4.65217 4.78505 4.99581 5.04867 5.42828 5.66149 5.84625 5.96534 6.59246 6.66973 6.83673 6.91263 7.20016 7.37749 7.56625 7.72018 7.83097 8.00058 8.18952 8.36607 8.65115 8.99585 9.31775 10.76912 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.047975 B = 0.007886 C = 0.007316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.502526 B = 3549.789107 C = 3826.179766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.187 3.813 3 H 0.060 0.940 4 C -0.564 4.564 5 H 0.057 0.943 6 C 0.073 3.927 7 N -0.879 5.879 8 Si 0.894 3.106 9 H -0.274 1.274 10 H -0.281 1.281 11 H -0.282 1.282 12 N -0.440 5.440 13 N -0.527 5.527 14 C 0.370 3.630 15 C -0.025 4.025 16 N -0.403 5.403 17 C -0.060 4.060 18 C 0.110 3.890 19 N -0.499 5.499 20 H 0.023 0.977 21 H 0.088 0.912 22 H 0.020 0.980 23 H 0.265 0.735 24 H 0.327 0.673 25 H 0.416 0.584 26 H 0.158 0.842 27 H 0.155 0.845 28 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.587 -6.210 7.721 10.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.079 3.921 3 H 0.078 0.922 4 C -0.603 4.603 5 H 0.075 0.925 6 C -0.131 4.131 7 N -0.516 5.516 8 Si 0.721 3.279 9 H -0.198 1.198 10 H -0.207 1.207 11 H -0.207 1.207 12 N -0.163 5.163 13 N -0.247 5.247 14 C 0.126 3.874 15 C -0.198 4.198 16 N -0.116 5.116 17 C -0.221 4.221 18 C -0.053 4.053 19 N -0.224 5.224 20 H 0.042 0.958 21 H 0.107 0.893 22 H 0.039 0.961 23 H 0.075 0.925 24 H 0.146 0.854 25 H 0.260 0.740 26 H 0.175 0.825 27 H 0.173 0.827 28 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 1.024 -5.604 7.890 9.732 hybrid contribution 0.770 -0.784 -1.982 2.266 sum 1.794 -6.388 5.908 8.885 Atomic orbital electron populations 1.21763 0.97034 0.99082 1.00922 1.19759 0.93419 0.94840 0.84077 0.92189 1.21740 1.33066 1.13749 0.91696 0.92458 1.24924 0.94326 0.94679 0.99165 1.69871 1.35458 1.22297 1.23948 0.86510 0.78788 0.79741 0.82825 1.19848 1.20740 1.20743 1.62718 1.15365 0.96021 1.42237 1.44097 1.51727 1.08102 1.20768 1.19353 0.91115 0.88594 0.88367 1.22790 1.06354 0.90398 1.00259 1.68091 1.07751 1.35739 1.00023 1.23040 1.02818 0.96138 1.00113 1.23394 0.95574 0.91147 0.95162 1.68085 1.15490 1.36427 1.02371 0.95796 0.89310 0.96085 0.92512 0.85447 0.74027 0.82480 0.82743 0.82319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.96 37.16 0.33 -2.62 15 2 C 0.19 4.39 3.08 -68.87 -0.21 4.17 15 3 H 0.06 1.54 8.14 -51.93 -0.42 1.11 15 4 C -0.56 -14.20 7.89 -34.44 -0.27 -14.47 15 5 H 0.06 1.46 7.68 -52.49 -0.40 1.06 15 6 C 0.07 1.89 5.30 -17.82 -0.09 1.80 15 7 N -0.88 -23.43 11.32 55.43 0.63 -22.80 15 8 Si 0.89 20.14 29.54 -169.99 -5.02 15.12 15 9 H -0.27 -6.19 7.11 56.52 0.40 -5.79 15 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 11 H -0.28 -6.38 7.11 56.52 0.40 -5.97 15 12 N -0.44 -9.26 6.61 -5.65 -0.04 -9.30 15 13 N -0.53 -10.15 5.30 31.21 0.17 -9.99 15 14 C 0.37 6.64 7.56 -154.73 -1.17 5.47 15 15 C -0.03 -0.41 11.09 -17.10 -0.19 -0.60 15 16 N -0.40 -6.41 10.49 -12.88 -0.14 -6.54 15 17 C -0.06 -0.83 11.21 -17.39 -0.19 -1.02 15 18 C 0.11 1.55 11.21 -17.40 -0.20 1.35 15 19 N -0.50 -8.81 9.97 -12.24 -0.12 -8.93 15 20 H 0.02 0.50 6.82 -51.93 -0.35 0.15 15 21 H 0.09 2.21 6.07 -51.93 -0.32 1.89 15 22 H 0.02 0.44 8.14 -51.93 -0.42 0.02 15 23 H 0.26 6.74 8.31 -40.82 -0.34 6.40 15 24 H 0.33 6.90 8.84 -181.36 -1.60 5.29 15 25 H 0.42 7.92 6.61 -185.16 -1.22 6.70 15 26 H 0.16 2.20 8.06 -52.49 -0.42 1.78 15 27 H 0.16 1.58 8.06 -52.49 -0.42 1.16 15 28 H 0.16 1.63 8.06 -52.49 -0.42 1.21 15 LS Contribution 245.63 15.07 3.70 3.70 Total: -1.00 -27.61 245.63 -7.96 -35.57 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -5.15 Total: 9.09 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -2.00 Total: -5.93 kcal Atomic # 7 Polarization: -58.06 SS G_CDS: 0.50 Total: -57.56 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -27.61 -7.96 -35.57 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306287389.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.142 kcal (2) G-P(sol) polarization free energy of solvation -27.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds