Wall clock time and date at job start Mon Mar 30 2020 02:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47262 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46882 * 119.99668 * 8 6 4 11 11 H 1.48493 * 109.47394 * 239.99732 * 8 6 4 12 12 N 1.46902 * 109.47094 * 119.99508 * 2 1 3 13 13 N 1.36604 * 110.99607 * 60.00550 * 12 2 1 14 14 C 1.38997 * 119.99987 * 180.02562 * 13 12 2 15 15 C 1.39337 * 120.09615 * 179.97438 * 14 13 12 16 16 N 1.31925 * 119.89009 * 179.97438 * 15 14 13 17 17 C 1.32273 * 120.08776 * 0.02562 * 16 15 14 18 18 C 1.38162 * 120.19346 * 359.97347 * 17 16 15 19 19 N 1.32251 * 120.10819 * 359.78950 * 18 17 16 20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 22 22 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 23 23 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 24 24 H 1.00898 * 110.99915 * 183.95130 * 12 2 1 25 25 H 0.96992 * 120.00152 * 359.97438 * 13 12 2 26 26 H 1.07997 * 120.05610 * 359.95787 * 15 14 13 27 27 H 1.08000 * 119.90819 * 179.97438 * 17 16 15 28 28 H 1.07998 * 119.94900 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1456 -2.2877 -3.6037 10 1 1.1661 -1.5867 -4.8160 11 1 3.1467 -0.1875 -4.8164 12 7 2.0196 -0.6924 1.1995 13 7 1.5817 -1.9859 1.2310 14 6 1.9363 -2.8141 2.2895 15 6 1.4903 -4.1337 2.3240 16 7 1.8298 -4.9164 3.3302 17 6 2.5918 -4.4497 4.3055 18 6 3.0361 -3.1418 4.2749 19 7 2.7043 -2.3519 3.2674 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 0.5139 0.8900 23 1 0.7089 1.1612 -3.4844 24 1 3.0262 -0.6500 1.2559 25 1 1.0226 -2.3263 0.5152 26 1 0.8675 -4.5152 1.5283 27 1 2.8677 -5.0928 5.1281 28 1 3.6585 -2.7650 5.0730 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306287389.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:07 Heat of formation + Delta-G solvation = 59.097518 kcal Electronic energy + Delta-G solvation = -13234.916328 eV Core-core repulsion = 10900.248677 eV Total energy + Delta-G solvation = -2334.667651 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.71910 -38.94859 -35.65269 -34.60231 -33.23069 -30.73577 -28.42235 -27.26720 -25.28297 -24.14475 -22.07624 -19.21726 -18.78143 -18.28794 -17.49739 -16.92991 -16.53194 -15.81586 -15.53773 -15.05508 -14.43267 -13.58568 -13.54677 -13.46386 -12.96754 -12.66230 -12.40111 -12.27651 -12.21125 -12.14465 -11.73432 -11.22161 -10.62005 -9.99563 -9.85280 -8.34527 -7.99125 -6.41253 0.19413 0.51525 1.35064 1.39548 1.48164 2.06566 2.34029 3.03075 3.06206 3.39723 3.66601 3.76900 4.20562 4.49890 4.58237 4.74502 4.75080 5.00054 5.06566 5.38472 5.44346 5.58846 5.79335 5.94551 6.07352 6.37425 6.69441 6.86065 7.01231 7.30377 7.51276 8.80786 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.047975 B = 0.007886 C = 0.007316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 583.502526 B = 3549.789107 C = 3826.179766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.192 3.808 3 H 0.033 0.967 4 C -0.567 4.567 5 H 0.051 0.949 6 C 0.030 3.970 7 N -0.905 5.905 8 Si 0.955 3.045 9 H -0.274 1.274 10 H -0.277 1.277 11 H -0.282 1.282 12 N -0.434 5.434 13 N -0.541 5.541 14 C 0.351 3.649 15 C -0.031 4.031 16 N -0.419 5.419 17 C -0.044 4.044 18 C 0.107 3.893 19 N -0.524 5.524 20 H 0.032 0.968 21 H 0.067 0.933 22 H 0.027 0.973 23 H 0.266 0.734 24 H 0.321 0.679 25 H 0.414 0.586 26 H 0.172 0.828 27 H 0.196 0.804 28 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.167 -7.734 8.799 11.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.084 3.916 3 H 0.051 0.949 4 C -0.606 4.606 5 H 0.070 0.930 6 C -0.172 4.172 7 N -0.542 5.542 8 Si 0.781 3.219 9 H -0.199 1.199 10 H -0.203 1.203 11 H -0.208 1.208 12 N -0.156 5.156 13 N -0.264 5.264 14 C 0.110 3.890 15 C -0.201 4.201 16 N -0.132 5.132 17 C -0.205 4.205 18 C -0.055 4.055 19 N -0.249 5.249 20 H 0.051 0.949 21 H 0.085 0.915 22 H 0.046 0.954 23 H 0.076 0.924 24 H 0.139 0.861 25 H 0.257 0.743 26 H 0.189 0.811 27 H 0.213 0.787 28 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 1.603 -7.155 8.993 11.603 hybrid contribution 0.662 -0.412 -2.108 2.247 sum 2.265 -7.567 6.885 10.478 Atomic orbital electron populations 1.21577 0.96486 0.99377 1.00088 1.19533 0.93736 0.93674 0.84693 0.94911 1.21898 1.32744 1.13463 0.92517 0.93029 1.25600 0.94594 0.95325 1.01678 1.69976 1.36377 1.23371 1.24513 0.85566 0.78186 0.78519 0.79653 1.19868 1.20298 1.20751 1.62642 1.14943 0.97571 1.40487 1.43926 1.53060 1.07567 1.21801 1.19498 0.92049 0.89033 0.88394 1.22980 1.06450 0.89749 1.00919 1.68195 1.08617 1.35871 1.00552 1.23779 1.00326 0.96488 0.99904 1.24090 0.95347 0.91161 0.94916 1.68066 1.15697 1.37989 1.03182 0.94889 0.91461 0.95395 0.92438 0.86058 0.74274 0.81089 0.78730 0.78418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.39 8.96 71.98 0.64 -4.74 15 2 C 0.19 9.20 3.08 44.17 0.14 9.33 15 3 H 0.03 1.74 8.14 -2.39 -0.02 1.72 15 4 C -0.57 -28.83 7.89 25.60 0.20 -28.63 15 5 H 0.05 2.64 7.68 -2.91 -0.02 2.62 15 6 C 0.03 1.54 5.30 84.66 0.45 1.99 15 7 N -0.90 -48.74 11.32 21.45 0.24 -48.50 15 8 Si 0.95 41.37 29.54 68.60 2.03 43.40 15 9 H -0.27 -11.78 7.11 99.48 0.71 -11.07 15 10 H -0.28 -11.77 7.11 99.48 0.71 -11.06 15 11 H -0.28 -12.14 7.11 99.48 0.71 -11.43 15 12 N -0.43 -18.45 6.61 -171.80 -1.14 -19.59 15 13 N -0.54 -20.82 5.30 -55.16 -0.29 -21.11 15 14 C 0.35 12.31 7.56 133.04 1.01 13.32 15 15 C -0.03 -0.96 11.09 84.94 0.94 -0.02 15 16 N -0.42 -12.24 10.49 -194.67 -2.04 -14.28 15 17 C -0.04 -1.03 11.21 84.61 0.95 -0.09 15 18 C 0.11 2.66 11.21 84.61 0.95 3.61 15 19 N -0.52 -17.70 9.97 -192.64 -1.92 -19.62 15 20 H 0.03 1.41 6.82 -2.39 -0.02 1.39 15 21 H 0.07 3.40 6.07 -2.39 -0.01 3.39 15 22 H 0.03 1.20 8.14 -2.38 -0.02 1.18 15 23 H 0.27 13.64 8.31 -92.71 -0.77 12.87 15 24 H 0.32 13.77 8.84 -210.56 -1.86 11.91 15 25 H 0.41 15.85 6.61 -215.50 -1.42 14.43 15 26 H 0.17 4.61 8.06 -2.91 -0.02 4.59 15 27 H 0.20 2.96 8.06 -2.91 -0.02 2.94 15 28 H 0.20 3.21 8.06 -2.91 -0.02 3.18 15 Total: -1.00 -58.34 245.63 0.06 -58.28 By element: Atomic # 1 Polarization: 28.75 SS G_CDS: -2.10 Total: 26.65 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: 5.28 Total: -5.23 kcal Atomic # 7 Polarization: -117.95 SS G_CDS: -5.15 Total: -123.10 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Total: -58.34 0.06 -58.28 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306287389.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.378 kcal (2) G-P(sol) polarization free energy of solvation -58.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds