Wall clock time and date at job start Mon Mar 30 2020 02:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47039 * 2 1 4 4 C 1.50697 * 109.46904 * 119.99794 * 2 1 3 5 5 H 1.07999 * 119.99999 * 120.00539 * 4 2 1 6 6 C 1.37881 * 120.00299 * 300.00420 * 4 2 1 7 7 N 1.31517 * 120.00113 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99930 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.46912 * 89.99797 * 8 6 4 10 10 H 1.48495 * 109.47054 * 210.00312 * 8 6 4 11 11 H 1.48499 * 109.46966 * 330.00010 * 8 6 4 12 12 N 1.46903 * 109.47730 * 240.00215 * 2 1 3 13 13 N 1.36593 * 110.99990 * 89.99702 * 12 2 1 14 14 C 1.39005 * 119.99902 * 180.02562 * 13 12 2 15 15 C 1.39335 * 120.09445 * 180.02562 * 14 13 12 16 16 N 1.31919 * 119.88999 * 180.02562 * 15 14 13 17 17 C 1.32281 * 120.08492 * 359.97438 * 16 15 14 18 18 C 1.38151 * 120.19273 * 0.28233 * 17 16 15 19 19 N 1.32256 * 120.11104 * 359.42622 * 18 17 16 20 20 H 1.09006 * 109.47125 * 60.00441 * 1 2 3 21 21 H 1.08996 * 109.46994 * 179.97438 * 1 2 3 22 22 H 1.08996 * 109.47507 * 300.00118 * 1 2 3 23 23 H 0.96994 * 119.99743 * 179.97438 * 7 6 4 24 24 H 1.00896 * 111.00253 * 213.95778 * 12 2 1 25 25 H 0.97003 * 120.00296 * 0.02562 * 13 12 2 26 26 H 1.08001 * 120.05613 * 0.04857 * 15 14 13 27 27 H 1.08002 * 119.90004 * 179.97438 * 17 16 15 28 28 H 1.08007 * 119.94682 * 179.70373 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6991 -0.2393 2.4828 7 7 2.1378 -0.8590 3.5566 8 14 0.6256 1.2798 2.6542 9 1 -0.8022 0.8744 2.6992 10 1 0.9769 1.9953 3.9070 11 1 0.8490 2.1773 1.4923 12 7 2.0198 -0.6924 -1.1994 13 7 2.1829 0.1812 -2.2367 14 6 2.6402 -0.2777 -3.4665 15 6 2.8078 0.6118 -4.5258 16 7 3.2416 0.1718 -5.6914 17 6 3.5175 -1.1115 -5.8547 18 6 3.3475 -1.9974 -4.8084 19 7 2.9186 -1.5637 -3.6349 20 1 -0.3634 0.5138 -0.8901 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 1.9037 -0.5274 4.4375 24 1 2.8769 -1.1883 -1.0060 25 1 1.9797 1.1219 -2.1151 26 1 2.5835 1.6598 -4.3928 27 1 3.8720 -1.4686 -6.8104 28 1 3.5694 -3.0452 -4.9476 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306287391.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:08 Heat of formation + Delta-G solvation = 65.119801 kcal Electronic energy + Delta-G solvation = -13090.719487 eV Core-core repulsion = 10756.312982 eV Total energy + Delta-G solvation = -2334.406506 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.77829 -38.95173 -35.82038 -34.69316 -33.60820 -31.39652 -28.53459 -27.13418 -25.35999 -24.06739 -22.39786 -19.61139 -18.76950 -18.18748 -17.53078 -17.05866 -16.72357 -16.04927 -15.37811 -15.29454 -14.84985 -14.10888 -13.67797 -13.60833 -13.18281 -12.78820 -12.69401 -12.31043 -12.17122 -11.68151 -11.50695 -11.29915 -10.84725 -10.09139 -9.89057 -8.39223 -8.21771 -6.46482 0.14483 0.46133 1.30774 1.33622 1.44785 1.91618 2.25880 2.96684 2.98611 3.27790 3.62645 3.70677 4.03906 4.36319 4.45173 4.50312 4.64464 4.71546 4.79687 4.95817 5.21955 5.45087 5.52935 5.76090 6.08061 6.34922 6.59465 6.74457 6.95522 7.19868 7.43975 8.78188 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.066633 B = 0.007095 C = 0.006704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.109035 B = 3945.578999 C = 4175.889713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.173 3.827 3 H 0.022 0.978 4 C -0.536 4.536 5 H 0.040 0.960 6 C 0.019 3.981 7 N -0.941 5.941 8 Si 0.957 3.043 9 H -0.264 1.264 10 H -0.298 1.298 11 H -0.243 1.243 12 N -0.432 5.432 13 N -0.557 5.557 14 C 0.350 3.650 15 C -0.018 4.018 16 N -0.420 5.420 17 C -0.035 4.035 18 C 0.102 3.898 19 N -0.527 5.527 20 H 0.060 0.940 21 H 0.050 0.950 22 H 0.040 0.960 23 H 0.270 0.730 24 H 0.330 0.670 25 H 0.416 0.584 26 H 0.184 0.816 27 H 0.196 0.804 28 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.165 3.951 -15.615 16.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.064 3.936 3 H 0.039 0.961 4 C -0.575 4.575 5 H 0.058 0.942 6 C -0.180 4.180 7 N -0.580 5.580 8 Si 0.783 3.217 9 H -0.190 1.190 10 H -0.225 1.225 11 H -0.166 1.166 12 N -0.156 5.156 13 N -0.281 5.281 14 C 0.110 3.890 15 C -0.188 4.188 16 N -0.134 5.134 17 C -0.196 4.196 18 C -0.059 4.059 19 N -0.251 5.251 20 H 0.079 0.921 21 H 0.069 0.931 22 H 0.058 0.942 23 H 0.079 0.921 24 H 0.150 0.850 25 H 0.259 0.741 26 H 0.200 0.800 27 H 0.213 0.787 28 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -0.813 3.649 -15.462 15.907 hybrid contribution 0.438 0.909 1.289 1.637 sum -0.375 4.558 -14.173 14.893 Atomic orbital electron populations 1.21970 0.96147 1.01416 0.99470 1.19857 0.93732 0.93304 0.86736 0.96089 1.21218 1.32488 1.13281 0.90514 0.94154 1.25819 0.96963 1.00208 0.95015 1.70025 1.46842 1.42299 0.98794 0.85736 0.79018 0.79331 0.77643 1.19039 1.22534 1.16637 1.62283 1.33042 1.18444 1.01838 1.43991 1.70430 1.08744 1.04975 1.19479 0.91834 0.91013 0.86679 1.23129 1.05884 1.01306 0.88485 1.68243 1.06302 1.17162 1.21645 1.23787 1.04457 0.89204 1.02146 1.24051 0.91713 1.02943 0.87194 1.68060 1.16593 1.14235 1.26227 0.92121 0.93102 0.94169 0.92117 0.85041 0.74148 0.79953 0.78704 0.78853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.35 9.00 71.98 0.65 -4.71 15 2 C 0.17 7.64 2.31 44.17 0.10 7.74 15 3 H 0.02 0.92 6.72 -2.39 -0.02 0.90 15 4 C -0.54 -29.53 9.17 25.60 0.23 -29.30 15 5 H 0.04 2.49 7.79 -2.91 -0.02 2.47 15 6 C 0.02 1.07 5.45 84.66 0.46 1.53 15 7 N -0.94 -57.12 13.96 21.45 0.30 -56.82 15 8 Si 0.96 42.47 24.37 68.60 1.67 44.14 15 9 H -0.26 -11.24 6.87 99.48 0.68 -10.55 15 10 H -0.30 -13.26 7.11 99.48 0.71 -12.56 15 11 H -0.24 -9.65 6.53 99.48 0.65 -9.00 15 12 N -0.43 -17.60 6.58 -171.81 -1.13 -18.73 15 13 N -0.56 -18.31 6.12 -55.16 -0.34 -18.65 15 14 C 0.35 10.90 7.56 133.04 1.01 11.90 15 15 C -0.02 -0.47 11.09 84.94 0.94 0.47 15 16 N -0.42 -10.80 10.49 -194.67 -2.04 -12.84 15 17 C -0.04 -0.76 11.21 84.60 0.95 0.19 15 18 C 0.10 2.44 11.21 84.61 0.95 3.39 15 19 N -0.53 -17.10 9.97 -192.64 -1.92 -19.02 15 20 H 0.06 2.07 8.14 -2.38 -0.02 2.05 15 21 H 0.05 2.15 8.14 -2.39 -0.02 2.13 15 22 H 0.04 1.63 3.27 -2.39 -0.01 1.62 15 23 H 0.27 15.28 8.31 -92.71 -0.77 14.51 15 24 H 0.33 14.60 8.15 -210.57 -1.72 12.88 15 25 H 0.42 11.52 8.07 -215.50 -1.74 9.78 15 26 H 0.18 3.62 8.06 -2.91 -0.02 3.59 15 27 H 0.20 2.63 8.06 -2.91 -0.02 2.60 15 28 H 0.19 3.16 8.06 -2.91 -0.02 3.13 15 Total: -1.00 -66.63 241.76 -0.51 -67.14 By element: Atomic # 1 Polarization: 25.91 SS G_CDS: -2.34 Total: 23.57 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: 5.29 Total: -8.78 kcal Atomic # 7 Polarization: -120.93 SS G_CDS: -5.13 Total: -126.06 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 1.67 Total: 44.14 kcal Total: -66.63 -0.51 -67.14 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306287391.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.257 kcal (2) G-P(sol) polarization free energy of solvation -66.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds