Wall clock time and date at job start Mon Mar 30 2020 02:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99633 * 2 1 4 4 H 1.48497 * 109.47044 * 240.00412 * 3 2 1 5 5 H 1.48502 * 109.47201 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46718 * 120.00174 * 3 2 1 7 7 C 1.37879 * 120.00250 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99635 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99950 * 359.97438 * 7 2 1 10 10 H 1.08997 * 110.26944 * 299.37721 * 9 7 2 11 11 C 1.55023 * 110.30336 * 177.19255 * 9 7 2 12 12 C 1.55505 * 101.04272 * 205.10485 * 11 9 7 13 13 C 1.53567 * 101.96943 * 33.42675 * 12 11 9 14 14 C 1.54253 * 110.30150 * 101.13227 * 13 12 11 15 15 C 1.55222 * 102.08710 * 158.15935 * 14 13 12 16 16 C 1.54402 * 104.06088 * 321.17053 * 15 14 13 17 17 H 1.08995 * 117.40849 * 165.10749 * 16 15 14 18 18 C 1.52917 * 118.37909 * 320.13246 * 16 15 14 19 19 C 1.53092 * 60.48635 * 93.23276 * 18 16 15 20 20 H 1.08993 * 119.33640 * 111.32392 * 19 18 16 21 21 O 1.42291 * 108.58951 * 339.18407 * 13 12 11 22 22 H 0.96993 * 120.00435 * 359.97438 * 1 2 3 23 23 H 1.08996 * 111.10941 * 323.04830 * 11 9 7 24 24 H 1.08999 * 111.10775 * 87.12321 * 11 9 7 25 25 H 1.08996 * 110.92724 * 275.25758 * 12 11 9 26 26 H 1.08995 * 110.93048 * 151.59161 * 12 11 9 27 27 H 1.08998 * 110.90499 * 39.96549 * 14 13 12 28 28 H 1.08992 * 110.90809 * 276.35929 * 14 13 12 29 29 H 1.08999 * 110.51084 * 202.52978 * 15 14 13 30 30 H 1.09000 * 110.51219 * 79.81774 * 15 14 13 31 31 H 1.09002 * 117.44402 * 200.85707 * 18 16 15 32 32 H 1.09003 * 117.44511 * 345.60861 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 1 0.6284 -2.5756 0.8907 11 6 2.2399 -3.6910 -0.0724 12 6 1.3392 -4.7871 -0.7093 13 6 0.4363 -3.9590 -1.6352 14 6 0.9282 -4.0609 -3.0936 15 6 -0.3485 -3.6884 -3.8940 16 6 -1.4937 -4.3644 -3.1094 17 1 -2.5116 -4.0450 -3.3326 18 6 -1.2568 -5.7629 -2.5381 19 6 -0.9879 -4.5355 -1.6636 20 1 -1.6343 -4.3369 -0.8088 21 8 0.4424 -2.6089 -1.1860 22 1 -0.4850 0.8399 0.0004 23 1 3.0890 -3.4585 -0.7150 24 1 2.5729 -3.9853 0.9229 25 1 0.7511 -5.2988 0.0525 26 1 1.9360 -5.4977 -1.2810 27 1 1.2502 -5.0761 -3.3254 28 1 1.7293 -3.3470 -3.2847 29 1 -0.2934 -4.0858 -4.9075 30 1 -0.4852 -2.6072 -3.9136 31 1 -2.1345 -6.3648 -2.3029 32 1 -0.3929 -6.3163 -2.9064 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306403250.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:25 Heat of formation + Delta-G solvation = -24.652505 kcal Electronic energy + Delta-G solvation = -14253.731935 eV Core-core repulsion = 11986.680203 eV Total energy + Delta-G solvation = -2267.051733 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.120 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.83371 -36.59615 -32.50454 -30.91205 -30.37378 -28.28991 -25.18554 -23.07645 -22.06997 -20.34195 -19.26350 -18.33098 -16.46419 -15.97746 -14.92805 -14.55513 -14.10301 -13.78023 -12.81970 -12.34502 -12.25693 -12.07597 -11.81848 -11.52873 -10.98778 -10.87615 -10.60938 -10.56204 -10.36385 -10.11328 -10.08963 -9.77065 -9.51820 -9.08873 -8.90311 -8.52438 -7.84212 -5.96808 -4.09999 3.33860 3.38473 3.40692 4.08410 4.44818 4.81004 5.10024 5.21756 5.41593 5.54944 5.58234 5.65517 5.74761 5.84433 5.88550 5.98035 6.13377 6.25547 6.37204 6.41321 6.44067 6.59674 6.66775 6.69475 6.75647 6.81449 6.96144 6.98454 7.64070 7.92218 8.30404 8.70531 9.09583 9.60592 11.10433 Molecular weight = 208.12amu Principal moments of inertia in cm(-1) A = 0.044565 B = 0.010223 C = 0.009418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.144218 B = 2738.221156 C = 2972.321193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.078 3.922 3 Si 0.890 3.110 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.535 4.535 8 H 0.062 0.938 9 C 0.209 3.791 10 H 0.026 0.974 11 C -0.148 4.148 12 C -0.143 4.143 13 C 0.130 3.870 14 C -0.131 4.131 15 C -0.087 4.087 16 C -0.168 4.168 17 H 0.102 0.898 18 C -0.156 4.156 19 C -0.160 4.160 20 H 0.106 0.894 21 O -0.334 6.334 22 H 0.261 0.739 23 H 0.064 0.936 24 H 0.059 0.941 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.348 -9.026 -4.362 10.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.128 4.128 3 Si 0.717 3.283 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.573 4.573 8 H 0.080 0.920 9 C 0.154 3.846 10 H 0.044 0.956 11 C -0.186 4.186 12 C -0.181 4.181 13 C 0.088 3.912 14 C -0.168 4.168 15 C -0.124 4.124 16 C -0.186 4.186 17 H 0.120 0.880 18 C -0.193 4.193 19 C -0.178 4.178 20 H 0.124 0.876 21 O -0.253 6.253 22 H 0.071 0.929 23 H 0.083 0.917 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.624 -8.720 -4.449 9.809 hybrid contribution 0.383 0.744 0.106 0.843 sum -0.241 -7.976 -4.343 9.085 Atomic orbital electron populations 1.70033 1.05985 1.26575 1.47194 1.25069 0.94749 0.99182 0.93754 0.86715 0.79731 0.83156 0.78673 1.20105 1.21206 1.20139 1.21068 0.92615 0.90155 1.53427 0.92023 1.20609 0.86734 0.92278 0.84969 0.95592 1.23363 0.99276 0.96326 0.99591 1.22970 0.98028 0.98122 0.98958 1.21494 0.90324 0.86411 0.92939 1.22812 0.97824 1.00366 0.95830 1.21905 0.92995 1.00568 0.96926 1.23086 0.99285 0.98404 0.97794 0.88005 1.22823 1.02358 0.90544 1.03618 1.23447 0.99276 1.00583 0.94519 0.87583 1.88763 1.71327 1.19806 1.45364 0.92937 0.91721 0.92178 0.91711 0.91955 0.91910 0.90684 0.92705 0.90400 0.88996 0.89457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -26.01 12.93 55.43 0.72 -25.29 16 2 C 0.08 2.25 5.42 -17.82 -0.10 2.16 16 3 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.54 -15.25 8.80 -34.44 -0.30 -15.55 16 8 H 0.06 1.70 7.76 -52.49 -0.41 1.29 16 9 C 0.21 5.51 3.28 -26.82 -0.09 5.42 16 10 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 11 C -0.15 -3.14 6.54 -24.33 -0.16 -3.30 16 12 C -0.14 -2.66 6.14 -25.11 -0.15 -2.82 16 13 C 0.13 2.67 0.95 -89.32 -0.08 2.58 16 14 C -0.13 -2.37 5.52 -24.90 -0.14 -2.51 16 15 C -0.09 -1.49 6.76 -24.82 -0.17 -1.66 16 16 C -0.17 -2.80 7.07 -89.34 -0.63 -3.44 16 17 H 0.10 1.61 8.14 -51.93 -0.42 1.18 16 18 C -0.16 -2.29 9.82 -26.73 -0.26 -2.56 16 19 C -0.16 -2.96 6.04 -89.64 -0.54 -3.50 16 20 H 0.11 2.07 8.14 -51.93 -0.42 1.64 16 21 O -0.33 -8.79 9.99 -35.23 -0.35 -9.14 16 22 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 23 H 0.06 1.37 8.04 -51.93 -0.42 0.95 16 24 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.06 1.14 7.91 -51.93 -0.41 0.73 16 26 H 0.06 1.01 7.59 -51.93 -0.39 0.61 16 27 H 0.06 0.98 6.99 -51.93 -0.36 0.62 16 28 H 0.07 1.46 8.14 -51.93 -0.42 1.03 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 31 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.09 1.20 7.17 -51.93 -0.37 0.83 16 LS Contribution 259.03 15.07 3.90 3.90 Total: -1.00 -30.40 259.03 -8.26 -38.66 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -4.88 Total: 0.42 kcal Atomic # 6 Polarization: -22.53 SS G_CDS: -2.63 Total: -25.16 kcal Atomic # 7 Polarization: -26.01 SS G_CDS: 0.72 Total: -25.29 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: -0.35 Total: -9.14 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -30.40 -8.26 -38.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306403250.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.009 kcal (2) G-P(sol) polarization free energy of solvation -30.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds