Wall clock time and date at job start Mon Mar 30 2020 02:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 119.99633 * 2 1 4 4 H 1.48497 * 109.47044 * 240.00412 * 3 2 1 5 5 H 1.48502 * 109.47201 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46718 * 120.00174 * 3 2 1 7 7 C 1.37879 * 120.00250 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99635 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99950 * 359.97438 * 7 2 1 10 10 H 1.08997 * 110.26944 * 299.37721 * 9 7 2 11 11 C 1.55023 * 110.30336 * 177.19255 * 9 7 2 12 12 C 1.55505 * 101.04272 * 205.10485 * 11 9 7 13 13 C 1.53567 * 101.96943 * 33.42675 * 12 11 9 14 14 C 1.54253 * 110.30150 * 101.13227 * 13 12 11 15 15 C 1.55222 * 102.08710 * 158.15935 * 14 13 12 16 16 C 1.54402 * 104.06088 * 321.17053 * 15 14 13 17 17 H 1.08995 * 117.40849 * 165.10749 * 16 15 14 18 18 C 1.52917 * 118.37909 * 320.13246 * 16 15 14 19 19 C 1.53092 * 60.48635 * 93.23276 * 18 16 15 20 20 H 1.08993 * 119.33640 * 111.32392 * 19 18 16 21 21 O 1.42291 * 108.58951 * 339.18407 * 13 12 11 22 22 H 0.96993 * 120.00435 * 359.97438 * 1 2 3 23 23 H 1.08996 * 111.10941 * 323.04830 * 11 9 7 24 24 H 1.08999 * 111.10775 * 87.12321 * 11 9 7 25 25 H 1.08996 * 110.92724 * 275.25758 * 12 11 9 26 26 H 1.08995 * 110.93048 * 151.59161 * 12 11 9 27 27 H 1.08998 * 110.90499 * 39.96549 * 14 13 12 28 28 H 1.08992 * 110.90809 * 276.35929 * 14 13 12 29 29 H 1.08999 * 110.51084 * 202.52978 * 15 14 13 30 30 H 1.09000 * 110.51219 * 79.81774 * 15 14 13 31 31 H 1.09002 * 117.44402 * 200.85707 * 18 16 15 32 32 H 1.09003 * 117.44511 * 345.60861 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 1 0.6284 -2.5756 0.8907 11 6 2.2399 -3.6910 -0.0724 12 6 1.3392 -4.7871 -0.7093 13 6 0.4363 -3.9590 -1.6352 14 6 0.9282 -4.0609 -3.0936 15 6 -0.3485 -3.6884 -3.8940 16 6 -1.4937 -4.3644 -3.1094 17 1 -2.5116 -4.0450 -3.3326 18 6 -1.2568 -5.7629 -2.5381 19 6 -0.9879 -4.5355 -1.6636 20 1 -1.6343 -4.3369 -0.8088 21 8 0.4424 -2.6089 -1.1860 22 1 -0.4850 0.8399 0.0004 23 1 3.0890 -3.4585 -0.7150 24 1 2.5729 -3.9853 0.9229 25 1 0.7511 -5.2988 0.0525 26 1 1.9360 -5.4977 -1.2810 27 1 1.2502 -5.0761 -3.3254 28 1 1.7293 -3.3470 -3.2847 29 1 -0.2934 -4.0858 -4.9075 30 1 -0.4852 -2.6072 -3.9136 31 1 -2.1345 -6.3648 -2.3029 32 1 -0.3929 -6.3163 -2.9064 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306403250.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:25 Heat of formation + Delta-G solvation = -42.809022 kcal Electronic energy + Delta-G solvation = -14254.519261 eV Core-core repulsion = 11986.680203 eV Total energy + Delta-G solvation = -2267.839058 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.120 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.34788 -38.26059 -34.63462 -32.66260 -31.82168 -30.06077 -27.06510 -24.51317 -23.67835 -22.17128 -20.62128 -19.86830 -18.59772 -17.42736 -16.74237 -16.54454 -15.59218 -15.34368 -14.56825 -14.08300 -13.74683 -13.69665 -13.40275 -13.17266 -12.80335 -12.57548 -12.38928 -12.14111 -12.02427 -11.90077 -11.58208 -11.23847 -11.09520 -10.92674 -10.69602 -10.30525 -9.75130 -8.14965 -6.36277 1.38329 1.41779 1.49300 2.39619 2.72286 3.10390 3.50385 3.69352 3.80476 4.07365 4.11407 4.26264 4.29643 4.37817 4.46636 4.68596 4.75127 4.81134 4.84622 4.93775 5.01422 5.06664 5.15897 5.19011 5.28892 5.37243 5.41516 5.49928 5.63107 5.75109 6.18315 6.62694 7.13978 7.40571 8.92820 Molecular weight = 208.12amu Principal moments of inertia in cm(-1) A = 0.044565 B = 0.010223 C = 0.009418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.144218 B = 2738.221156 C = 2972.321193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.021 3.979 3 Si 0.961 3.039 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.557 4.557 8 H 0.065 0.935 9 C 0.200 3.800 10 H -0.014 1.014 11 C -0.140 4.140 12 C -0.131 4.131 13 C 0.110 3.890 14 C -0.125 4.125 15 C -0.086 4.086 16 C -0.174 4.174 17 H 0.106 0.894 18 C -0.111 4.111 19 C -0.195 4.195 20 H 0.082 0.918 21 O -0.373 6.373 22 H 0.260 0.740 23 H 0.065 0.935 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.098 0.902 27 H 0.100 0.900 28 H 0.053 0.947 29 H 0.087 0.913 30 H 0.042 0.958 31 H 0.118 0.882 32 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.511 -10.840 -5.544 12.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.181 4.181 3 Si 0.785 3.215 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.187 1.187 7 C -0.594 4.594 8 H 0.083 0.917 9 C 0.145 3.855 10 H 0.004 0.996 11 C -0.177 4.177 12 C -0.168 4.168 13 C 0.069 3.931 14 C -0.163 4.163 15 C -0.124 4.124 16 C -0.192 4.192 17 H 0.124 0.876 18 C -0.147 4.147 19 C -0.214 4.214 20 H 0.100 0.900 21 O -0.293 6.293 22 H 0.069 0.931 23 H 0.083 0.917 24 H 0.093 0.907 25 H 0.090 0.910 26 H 0.116 0.884 27 H 0.119 0.881 28 H 0.072 0.928 29 H 0.106 0.894 30 H 0.061 0.939 31 H 0.136 0.864 32 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.247 -10.551 -5.631 11.962 hybrid contribution 0.065 1.267 0.474 1.354 sum 0.312 -9.285 -5.157 10.626 Atomic orbital electron populations 1.70194 1.07791 1.27375 1.48697 1.25990 0.95604 1.03176 0.93290 0.85587 0.78404 0.78258 0.79213 1.19416 1.20866 1.18724 1.21524 0.93080 0.91674 1.53130 0.91652 1.20472 0.87236 0.93871 0.83935 0.99637 1.23228 0.98451 0.95230 1.00838 1.22953 0.97371 0.97552 0.98934 1.21892 0.92315 0.84281 0.94616 1.22814 0.97442 1.01903 0.94122 1.21863 0.92943 0.98760 0.98810 1.23221 0.99317 1.00697 0.96002 0.87553 1.22958 1.03826 0.88991 0.98943 1.23332 0.97966 1.05040 0.95013 0.89993 1.88656 1.71689 1.23952 1.44996 0.93076 0.91656 0.90730 0.91014 0.88384 0.88137 0.92766 0.89408 0.93877 0.86362 0.87332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -56.82 12.93 21.45 0.28 -56.54 16 2 C 0.02 1.25 5.42 84.65 0.46 1.71 16 3 Si 0.96 45.27 29.54 68.60 2.03 47.29 16 4 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 6 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.56 -32.64 8.80 25.60 0.23 -32.42 16 8 H 0.07 3.65 7.76 -2.91 -0.02 3.63 16 9 C 0.20 10.96 3.28 30.54 0.10 11.06 16 10 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 11 C -0.14 -5.88 6.54 32.15 0.21 -5.67 16 12 C -0.13 -4.61 6.14 31.65 0.19 -4.42 16 13 C 0.11 4.44 0.95 -9.95 -0.01 4.43 16 14 C -0.13 -4.31 5.52 31.78 0.18 -4.13 16 15 C -0.09 -2.85 6.76 31.83 0.22 -2.64 16 16 C -0.17 -5.50 7.07 -9.96 -0.07 -5.57 16 17 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 18 C -0.11 -2.79 9.82 30.60 0.30 -2.49 16 19 C -0.19 -7.05 6.04 -10.16 -0.06 -7.11 16 20 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 21 O -0.37 -20.42 9.99 -148.98 -1.49 -21.91 16 22 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 23 H 0.06 2.71 8.04 -2.39 -0.02 2.69 16 24 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 25 H 0.07 2.41 7.91 -2.39 -0.02 2.39 16 26 H 0.10 2.76 7.59 -2.39 -0.02 2.74 16 27 H 0.10 2.68 6.99 -2.39 -0.02 2.66 16 28 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.11 2.34 7.17 -2.39 -0.02 2.32 16 Total: -1.00 -69.01 259.03 3.64 -65.38 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 1.08 Total: 13.02 kcal Atomic # 6 Polarization: -48.97 SS G_CDS: 1.74 Total: -47.24 kcal Atomic # 7 Polarization: -56.82 SS G_CDS: 0.28 Total: -56.54 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -1.49 Total: -21.91 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.29 kcal Total: -69.01 3.64 -65.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306403250.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.569 kcal (2) G-P(sol) polarization free energy of solvation -69.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds