Wall clock time and date at job start Mon Mar 30 2020 02:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00078 * 2 1 4 4 H 1.48497 * 109.46889 * 239.99687 * 3 2 1 5 5 H 1.48504 * 109.46985 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47087 * 119.99889 * 3 2 1 7 7 C 1.37883 * 119.99706 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99393 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00015 * 359.97438 * 7 2 1 10 10 H 1.09000 * 110.53066 * 302.80448 * 9 7 2 11 11 C 1.55067 * 110.58416 * 180.02562 * 9 7 2 12 12 C 1.55033 * 102.10956 * 204.77988 * 11 9 7 13 13 C 1.53293 * 103.80791 * 20.89295 * 12 11 9 14 14 C 1.54074 * 110.53616 * 123.21091 * 13 12 11 15 15 C 1.55018 * 102.70635 * 82.51505 * 14 13 12 16 16 C 1.54269 * 104.40784 * 36.88468 * 15 14 13 17 17 H 1.09002 * 117.37001 * 197.29046 * 16 15 14 18 18 C 1.52912 * 118.46540 * 42.30437 * 16 15 14 19 19 C 1.53497 * 110.86999 * 239.28026 * 13 12 11 20 20 H 1.08998 * 117.39935 * 43.52294 * 19 13 12 21 21 O 1.42804 * 108.30714 * 1.57734 * 13 12 11 22 22 H 0.96995 * 120.00050 * 0.02562 * 1 2 3 23 23 H 1.08997 * 110.90436 * 322.98557 * 11 9 7 24 24 H 1.09004 * 110.90318 * 86.58643 * 11 9 7 25 25 H 1.09000 * 110.55407 * 139.46983 * 12 11 9 26 26 H 1.08996 * 110.56199 * 262.31076 * 12 11 9 27 27 H 1.08997 * 110.76258 * 200.81990 * 14 13 12 28 28 H 1.09004 * 110.76725 * 324.21215 * 14 13 12 29 29 H 1.08997 * 110.44570 * 155.61675 * 15 14 13 30 30 H 1.09001 * 110.45043 * 278.15684 * 15 14 13 31 31 H 1.09003 * 117.45032 * 14.18331 * 18 16 15 32 32 H 1.08997 * 117.45821 * 158.93650 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.5812 -2.5539 0.8577 11 6 2.2355 -3.6972 -0.0005 12 6 1.3787 -4.8223 -0.6359 13 6 0.2804 -4.0641 -1.3901 14 6 0.2784 -4.4565 -2.8800 15 6 -0.5378 -5.7744 -2.8845 16 6 -1.6353 -5.5498 -1.8239 17 1 -2.1518 -6.4308 -1.4429 18 6 -2.3407 -4.1938 -1.7808 19 6 -1.1100 -4.4578 -0.8725 20 1 -1.2397 -4.5363 0.2069 21 8 0.5132 -2.6639 -1.2332 22 1 -0.4850 0.8400 -0.0004 23 1 3.1106 -3.4815 -0.6135 24 1 2.5293 -3.9592 1.0160 25 1 1.9777 -5.4157 -1.3267 26 1 0.9445 -5.4559 0.1375 27 1 -0.2170 -3.6931 -3.4799 28 1 1.2942 -4.6298 -3.2354 29 1 -0.9841 -5.9425 -3.8646 30 1 0.0960 -6.6158 -2.6042 31 1 -2.2114 -3.5327 -2.6378 32 1 -3.3167 -4.1500 -1.2975 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306403252.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:27 Heat of formation + Delta-G solvation = -44.148041 kcal Electronic energy + Delta-G solvation = -14213.781196 eV Core-core repulsion = 11945.884073 eV Total energy + Delta-G solvation = -2267.897122 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.120 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.33568 -38.17734 -34.65262 -32.73255 -31.91675 -29.78965 -27.03215 -24.84638 -23.79042 -21.87740 -20.53713 -19.98000 -18.62904 -17.30366 -16.83530 -16.53835 -15.69349 -15.13169 -14.78404 -14.24021 -13.79529 -13.52144 -13.29473 -13.01870 -12.88647 -12.66571 -12.40962 -12.14461 -12.02910 -11.83056 -11.62896 -11.28884 -11.02656 -10.84883 -10.67586 -10.52871 -9.79410 -8.16664 -6.37795 1.38643 1.42472 1.49988 2.39458 2.77546 3.07552 3.46756 3.76035 3.82903 3.99285 4.14662 4.25502 4.29139 4.35212 4.42047 4.64985 4.74581 4.79044 4.85500 4.93468 4.98667 5.08931 5.12682 5.17148 5.32377 5.34963 5.39509 5.47029 5.56188 5.73880 6.17297 6.62659 7.02922 7.37781 8.91548 Molecular weight = 208.12amu Principal moments of inertia in cm(-1) A = 0.048166 B = 0.009827 C = 0.009010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.178429 B = 2848.629207 C = 3106.967213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.020 3.980 3 Si 0.964 3.036 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.555 4.555 8 H 0.065 0.935 9 C 0.203 3.797 10 H -0.012 1.012 11 C -0.142 4.142 12 C -0.125 4.125 13 C 0.102 3.898 14 C -0.120 4.120 15 C -0.083 4.083 16 C -0.136 4.136 17 H 0.132 0.868 18 C -0.156 4.156 19 C -0.199 4.199 20 H 0.090 0.910 21 O -0.381 6.381 22 H 0.262 0.738 23 H 0.062 0.938 24 H 0.072 0.928 25 H 0.091 0.909 26 H 0.077 0.923 27 H 0.051 0.949 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.685 -11.489 -3.756 12.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.182 4.182 3 Si 0.788 3.212 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.592 4.592 8 H 0.083 0.917 9 C 0.147 3.853 10 H 0.006 0.994 11 C -0.180 4.180 12 C -0.163 4.163 13 C 0.062 3.938 14 C -0.158 4.158 15 C -0.120 4.120 16 C -0.154 4.154 17 H 0.150 0.850 18 C -0.193 4.193 19 C -0.217 4.217 20 H 0.108 0.892 21 O -0.301 6.301 22 H 0.070 0.930 23 H 0.081 0.919 24 H 0.090 0.910 25 H 0.109 0.891 26 H 0.096 0.904 27 H 0.069 0.931 28 H 0.096 0.904 29 H 0.104 0.896 30 H 0.112 0.888 31 H 0.094 0.906 32 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -0.896 -11.235 -3.890 11.923 hybrid contribution 0.152 1.195 0.462 1.290 sum -0.745 -10.041 -3.428 10.636 Atomic orbital electron populations 1.70187 1.07780 1.27513 1.48590 1.26020 0.95674 1.03282 0.93215 0.85545 0.78383 0.78069 0.79221 1.19461 1.20736 1.18660 1.21440 0.93119 0.91483 1.53182 0.91650 1.20517 0.87845 0.93567 0.83347 0.99429 1.23152 0.98797 0.95456 1.00593 1.22741 0.96194 0.97416 0.99925 1.22099 0.92300 0.83892 0.95555 1.22503 1.01075 0.97907 0.94308 1.21927 0.94962 0.96342 0.98728 1.23265 1.00178 0.92538 0.99425 0.85011 1.23111 0.95775 0.99087 1.01355 1.23699 0.94754 1.06827 0.96449 0.89196 1.89052 1.76427 1.21297 1.43307 0.92962 0.91934 0.90961 0.89053 0.90432 0.93052 0.90399 0.89604 0.88758 0.90638 0.87668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -56.69 13.12 21.45 0.28 -56.41 16 2 C 0.02 1.18 5.44 84.66 0.46 1.64 16 3 Si 0.96 45.29 29.54 68.60 2.03 47.32 16 4 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 7 C -0.56 -32.76 8.82 25.60 0.23 -32.53 16 8 H 0.07 3.68 7.76 -2.91 -0.02 3.66 16 9 C 0.20 11.15 3.10 30.56 0.09 11.25 16 10 H -0.01 -0.73 8.14 -2.39 -0.02 -0.74 16 11 C -0.14 -6.08 6.57 32.00 0.21 -5.87 16 12 C -0.13 -4.45 6.12 31.39 0.19 -4.26 16 13 C 0.10 4.17 0.94 -10.17 -0.01 4.16 16 14 C -0.12 -4.08 5.53 31.65 0.17 -3.90 16 15 C -0.08 -2.05 6.59 31.71 0.21 -1.84 16 16 C -0.14 -3.75 6.98 -10.04 -0.07 -3.82 16 17 H 0.13 2.87 8.14 -2.39 -0.02 2.86 16 18 C -0.16 -5.28 9.93 31.33 0.31 -4.97 16 19 C -0.20 -7.48 6.00 -9.51 -0.06 -7.54 16 20 H 0.09 3.53 8.14 -2.39 -0.02 3.51 16 21 O -0.38 -20.97 10.44 -148.98 -1.56 -22.53 16 22 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 23 H 0.06 2.64 8.03 -2.39 -0.02 2.62 16 24 H 0.07 2.81 8.14 -2.38 -0.02 2.79 16 25 H 0.09 2.70 7.49 -2.39 -0.02 2.68 16 26 H 0.08 2.49 7.73 -2.39 -0.02 2.47 16 27 H 0.05 1.93 7.52 -2.39 -0.02 1.91 16 28 H 0.08 2.43 7.74 -2.38 -0.02 2.41 16 29 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.08 2.78 7.37 -2.39 -0.02 2.76 16 32 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -69.15 259.41 3.58 -65.57 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: 1.08 Total: 13.72 kcal Atomic # 6 Polarization: -49.42 SS G_CDS: 1.74 Total: -47.68 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: 0.28 Total: -56.41 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -1.56 Total: -22.53 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -69.15 3.58 -65.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306403252.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.425 kcal (2) G-P(sol) polarization free energy of solvation -69.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds