Wall clock time and date at job start Mon Mar 30 2020 02:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48505 * 109.47330 * 269.99799 * 3 2 1 5 5 H 1.48495 * 109.47202 * 29.99760 * 3 2 1 6 6 H 1.48496 * 109.47402 * 149.99801 * 3 2 1 7 7 C 1.37877 * 119.99545 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99545 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00490 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47491 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.47059 * 179.97438 * 10 9 7 12 12 C 1.38992 * 119.99694 * 179.72488 * 11 10 9 13 13 C 1.39182 * 120.04344 * 0.02562 * 12 11 10 14 14 N 1.32036 * 120.07419 * 179.68828 * 13 12 11 15 15 C 1.32062 * 120.17267 * 0.60703 * 14 13 12 16 16 C 1.39126 * 120.08691 * 359.66629 * 15 14 13 17 17 N 1.38991 * 120.04406 * 179.97438 * 16 15 14 18 18 N 1.32732 * 120.04015 * 180.28064 * 12 11 10 19 19 H 0.97004 * 119.99855 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.46801 * 59.99996 * 9 7 2 21 21 H 1.09000 * 109.46987 * 300.00765 * 9 7 2 22 22 H 1.09004 * 109.47066 * 60.00201 * 10 9 7 23 23 H 1.08994 * 109.46974 * 300.00349 * 10 9 7 24 24 H 0.97001 * 120.00384 * 0.02562 * 11 10 9 25 25 H 1.07995 * 119.95782 * 359.97029 * 13 12 11 26 26 H 1.08010 * 119.95487 * 179.69178 * 15 14 13 27 27 H 0.96997 * 120.00131 * 180.02562 * 17 16 15 28 28 H 0.97001 * 120.00111 * 0.02700 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2451 -3.6621 0.0015 11 7 1.5125 -4.9308 0.0032 12 6 2.2074 -6.1345 -0.0025 13 6 3.5992 -6.1356 -0.0093 14 7 4.2600 -7.2787 -0.0084 15 6 3.6038 -8.4247 -0.0132 16 6 2.2126 -8.4318 -0.0122 17 7 1.5228 -9.6384 -0.0178 18 7 1.5446 -7.2844 -0.0065 19 1 -0.4850 0.8401 -0.0004 20 1 0.6240 -2.5575 -0.8880 21 1 0.6246 -2.5562 0.8919 22 1 2.8724 -3.6040 0.8910 23 1 2.8711 -3.6048 -0.8890 24 1 0.5425 -4.9308 0.0039 25 1 4.1393 -5.2003 -0.0106 26 1 4.1479 -9.3577 -0.0176 27 1 0.5528 -9.6426 -0.0175 28 1 2.0114 -10.4764 -0.0221 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306444119.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:21 Heat of formation + Delta-G solvation = 40.638186 kcal Electronic energy + Delta-G solvation = -12694.750856 eV Core-core repulsion = 10359.282748 eV Total energy + Delta-G solvation = -2335.468108 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.57931 -36.46440 -34.96429 -33.51134 -32.32477 -29.73232 -28.09247 -24.91120 -23.84752 -22.49409 -20.90164 -18.14118 -17.40825 -16.31449 -16.28596 -15.65510 -14.97058 -14.95909 -14.50934 -13.92478 -13.79160 -12.55165 -12.30586 -11.56709 -11.35922 -11.23278 -11.10405 -10.92171 -10.67292 -10.14947 -9.70760 -9.35613 -8.81496 -8.54871 -8.41782 -7.25836 -6.12982 -4.16874 1.55166 1.72622 3.19059 3.27144 3.33850 3.37258 3.84562 4.22869 4.38642 4.85422 4.91975 5.22466 5.24209 5.53935 5.71207 6.07571 6.16498 6.50129 6.59608 6.89214 7.26169 7.36947 7.55359 7.57167 7.84335 7.93751 8.02886 8.21913 8.46338 8.88901 9.48336 10.98580 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.078745 B = 0.005523 C = 0.005180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 355.490955 B = 5068.846311 C = 5403.880963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.524 4.524 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.123 3.877 11 N -0.701 5.701 12 C 0.411 3.589 13 C -0.077 4.077 14 N -0.372 5.372 15 C -0.099 4.099 16 C 0.404 3.596 17 N -0.846 5.846 18 N -0.577 5.577 19 H 0.263 0.737 20 H 0.024 0.976 21 H 0.024 0.976 22 H 0.058 0.942 23 H 0.058 0.942 24 H 0.404 0.596 25 H 0.162 0.838 26 H 0.152 0.848 27 H 0.402 0.598 28 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.340 -14.933 -0.031 15.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.563 4.563 8 H 0.079 0.921 9 C -0.024 4.024 10 C 0.001 3.999 11 N -0.329 5.329 12 C 0.168 3.832 13 C -0.246 4.246 14 N -0.084 5.084 15 C -0.266 4.266 16 C 0.161 3.839 17 N -0.391 5.391 18 N -0.311 5.311 19 H 0.072 0.928 20 H 0.042 0.958 21 H 0.043 0.957 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.239 0.761 25 H 0.179 0.821 26 H 0.169 0.831 27 H 0.231 0.769 28 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 3.364 -14.548 -0.017 14.931 hybrid contribution -0.335 0.565 -0.013 0.657 sum 3.029 -13.983 -0.030 14.307 Atomic orbital electron populations 1.69960 1.06137 1.26977 1.50008 1.25004 0.94892 0.99479 0.94902 0.86498 0.79807 0.82952 0.78214 1.20536 1.21162 1.19683 1.21011 0.93203 0.90253 1.51816 0.92130 1.19300 0.94204 0.90736 0.98180 1.21922 0.96514 0.81095 1.00387 1.45203 1.09496 1.02246 1.75997 1.19180 0.89878 0.86119 0.88038 1.22724 0.90468 0.97400 1.14030 1.67928 1.39023 0.97765 1.03704 1.22413 0.90015 0.97404 1.16781 1.18984 0.89596 0.86376 0.88915 1.42120 1.09721 1.03992 1.83249 1.67307 1.39258 0.96597 1.27921 0.92763 0.95763 0.95741 0.92354 0.92357 0.76061 0.82055 0.83072 0.76872 0.76147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.90 13.29 55.43 0.74 -25.16 15 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 15 3 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 15 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 5 H -0.29 -6.65 7.11 56.52 0.40 -6.24 15 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 15 7 C -0.52 -14.07 9.11 -34.44 -0.31 -14.38 15 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 15 9 C 0.01 0.32 5.09 -27.89 -0.14 0.18 15 10 C 0.12 2.41 4.84 -4.04 -0.02 2.39 15 11 N -0.70 -12.61 5.73 -60.33 -0.35 -12.96 15 12 C 0.41 7.24 7.66 -154.73 -1.19 6.05 15 13 C -0.08 -1.31 10.48 -17.11 -0.18 -1.49 15 14 N -0.37 -6.13 10.48 -12.70 -0.13 -6.26 15 15 C -0.10 -1.39 11.06 -17.12 -0.19 -1.58 15 16 C 0.40 5.65 7.77 -154.72 -1.20 4.45 15 17 N -0.85 -7.78 9.08 31.19 0.28 -7.50 15 18 N -0.58 -9.63 10.56 -11.43 -0.12 -9.75 15 19 H 0.26 7.21 8.31 -40.82 -0.34 6.87 15 20 H 0.02 0.62 8.14 -51.93 -0.42 0.20 15 21 H 0.02 0.63 8.14 -51.93 -0.42 0.20 15 22 H 0.06 1.11 7.95 -51.93 -0.41 0.70 15 23 H 0.06 1.11 7.92 -51.93 -0.41 0.70 15 24 H 0.40 7.15 8.60 -40.82 -0.35 6.79 15 25 H 0.16 2.61 6.71 -52.49 -0.35 2.26 15 26 H 0.15 1.60 8.06 -52.48 -0.42 1.18 15 27 H 0.40 3.38 8.95 -40.82 -0.37 3.01 15 28 H 0.41 2.40 8.83 -40.82 -0.36 2.04 15 LS Contribution 250.82 15.07 3.78 3.78 Total: -1.00 -30.53 250.82 -7.21 -37.74 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -3.06 Total: 7.00 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -3.33 Total: -2.84 kcal Atomic # 7 Polarization: -62.05 SS G_CDS: 0.42 Total: -61.63 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -30.53 -7.21 -37.74 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306444119.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.378 kcal (2) G-P(sol) polarization free energy of solvation -30.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds