Wall clock time and date at job start Mon Mar 30 2020 02:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48505 * 109.47330 * 269.99799 * 3 2 1 5 5 H 1.48495 * 109.47202 * 29.99760 * 3 2 1 6 6 H 1.48496 * 109.47402 * 149.99801 * 3 2 1 7 7 C 1.37877 * 119.99545 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99545 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00490 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47491 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.47059 * 179.97438 * 10 9 7 12 12 C 1.38992 * 119.99694 * 179.72488 * 11 10 9 13 13 C 1.39182 * 120.04344 * 0.02562 * 12 11 10 14 14 N 1.32036 * 120.07419 * 179.68828 * 13 12 11 15 15 C 1.32062 * 120.17267 * 0.60703 * 14 13 12 16 16 C 1.39126 * 120.08691 * 359.66629 * 15 14 13 17 17 N 1.38991 * 120.04406 * 179.97438 * 16 15 14 18 18 N 1.32732 * 120.04015 * 180.28064 * 12 11 10 19 19 H 0.97004 * 119.99855 * 0.02562 * 1 2 3 20 20 H 1.09004 * 109.46801 * 59.99996 * 9 7 2 21 21 H 1.09000 * 109.46987 * 300.00765 * 9 7 2 22 22 H 1.09004 * 109.47066 * 60.00201 * 10 9 7 23 23 H 1.08994 * 109.46974 * 300.00349 * 10 9 7 24 24 H 0.97001 * 120.00384 * 0.02562 * 11 10 9 25 25 H 1.07995 * 119.95782 * 359.97029 * 13 12 11 26 26 H 1.08010 * 119.95487 * 179.69178 * 15 14 13 27 27 H 0.96997 * 120.00131 * 180.02562 * 17 16 15 28 28 H 0.97001 * 120.00111 * 0.02700 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0017 10 6 2.2451 -3.6621 0.0015 11 7 1.5125 -4.9308 0.0032 12 6 2.2074 -6.1345 -0.0025 13 6 3.5992 -6.1356 -0.0093 14 7 4.2600 -7.2787 -0.0084 15 6 3.6038 -8.4247 -0.0132 16 6 2.2126 -8.4318 -0.0122 17 7 1.5228 -9.6384 -0.0178 18 7 1.5446 -7.2844 -0.0065 19 1 -0.4850 0.8401 -0.0004 20 1 0.6240 -2.5575 -0.8880 21 1 0.6246 -2.5562 0.8919 22 1 2.8724 -3.6040 0.8910 23 1 2.8711 -3.6048 -0.8890 24 1 0.5425 -4.9308 0.0039 25 1 4.1393 -5.2003 -0.0106 26 1 4.1479 -9.3577 -0.0176 27 1 0.5528 -9.6426 -0.0175 28 1 2.0114 -10.4764 -0.0221 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306444119.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:21 Heat of formation + Delta-G solvation = 18.025521 kcal Electronic energy + Delta-G solvation = -12695.731415 eV Core-core repulsion = 10359.282748 eV Total energy + Delta-G solvation = -2336.448667 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.77751 -37.86255 -36.07643 -35.29138 -33.81596 -31.36759 -29.38937 -26.71674 -25.06453 -23.94244 -22.52765 -19.36355 -18.80615 -18.07555 -17.44127 -16.81491 -16.36493 -16.31146 -16.10819 -15.38884 -15.32193 -14.25759 -13.80928 -13.15173 -13.08728 -12.63744 -12.57295 -12.48814 -12.33534 -11.73536 -11.60190 -11.38168 -10.58230 -10.03239 -9.64685 -8.47053 -8.22831 -6.33729 0.35932 0.50884 1.43990 1.44544 1.55795 1.99380 2.42902 2.76058 3.02156 3.12721 3.70744 3.73611 4.07384 4.35712 4.45135 4.52012 4.61056 4.86738 5.30067 5.44996 5.58159 5.67484 5.83218 6.14198 6.27329 6.41730 6.67354 6.82349 6.92642 7.31399 7.36182 8.89545 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.078745 B = 0.005523 C = 0.005180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 355.490955 B = 5068.846311 C = 5403.880963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.967 3.033 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.261 1.261 7 C -0.542 4.542 8 H 0.070 0.930 9 C 0.020 3.980 10 C 0.146 3.854 11 N -0.708 5.708 12 C 0.397 3.603 13 C -0.101 4.101 14 N -0.387 5.387 15 C -0.087 4.087 16 C 0.401 3.599 17 N -0.820 5.820 18 N -0.595 5.595 19 H 0.264 0.736 20 H 0.001 0.999 21 H 0.002 0.998 22 H 0.063 0.937 23 H 0.063 0.937 24 H 0.402 0.598 25 H 0.162 0.838 26 H 0.191 0.809 27 H 0.410 0.590 28 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.528 -16.373 -0.039 16.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.792 3.208 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.185 1.185 7 C -0.580 4.580 8 H 0.088 0.912 9 C -0.017 4.017 10 C 0.023 3.977 11 N -0.337 5.337 12 C 0.157 3.843 13 C -0.268 4.268 14 N -0.100 5.100 15 C -0.256 4.256 16 C 0.156 3.844 17 N -0.366 5.366 18 N -0.330 5.330 19 H 0.073 0.927 20 H 0.020 0.980 21 H 0.020 0.980 22 H 0.081 0.919 23 H 0.081 0.919 24 H 0.237 0.763 25 H 0.179 0.821 26 H 0.208 0.792 27 H 0.240 0.760 28 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 4.563 -16.031 -0.026 16.668 hybrid contribution -0.736 0.749 -0.012 1.050 sum 3.827 -15.282 -0.038 15.754 Atomic orbital electron populations 1.70091 1.07830 1.27941 1.51258 1.25943 0.95735 1.03394 0.94527 0.85404 0.78710 0.78230 0.78466 1.19845 1.21020 1.18469 1.21495 0.93947 0.91425 1.51131 0.91206 1.19121 0.94474 0.92210 0.95920 1.21474 0.95047 0.80365 1.00849 1.44924 1.09205 1.02126 1.77443 1.19179 0.90073 0.86099 0.88994 1.22693 0.90287 0.97931 1.15894 1.67949 1.39500 0.98267 1.04246 1.23097 0.90364 0.98056 1.14109 1.19292 0.90133 0.86875 0.88101 1.42101 1.10245 1.03245 1.81035 1.67295 1.39932 0.97155 1.28656 0.92693 0.98019 0.97991 0.91881 0.91861 0.76276 0.82114 0.79235 0.76024 0.73880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.14 13.29 21.45 0.28 -54.85 15 2 C 0.00 0.13 5.46 84.65 0.46 0.59 15 3 Si 0.97 42.99 29.54 68.60 2.03 45.02 15 4 H -0.27 -11.77 7.11 99.48 0.71 -11.07 15 5 H -0.28 -12.48 7.11 99.48 0.71 -11.78 15 6 H -0.26 -11.01 7.11 99.48 0.71 -10.30 15 7 C -0.54 -29.35 9.11 25.60 0.23 -29.12 15 8 H 0.07 3.57 7.74 -2.91 -0.02 3.54 15 9 C 0.02 1.01 5.09 29.85 0.15 1.16 15 10 C 0.15 5.80 4.84 86.38 0.42 6.21 15 11 N -0.71 -25.92 5.73 -344.80 -1.98 -27.90 15 12 C 0.40 13.90 7.66 132.98 1.02 14.92 15 13 C -0.10 -3.41 10.48 84.89 0.89 -2.52 15 14 N -0.39 -12.12 10.48 -194.09 -2.03 -14.16 15 15 C -0.09 -2.18 11.06 84.87 0.94 -1.24 15 16 C 0.40 10.18 7.77 132.96 1.03 11.21 15 17 N -0.82 -12.26 9.08 -55.24 -0.50 -12.76 15 18 N -0.60 -19.21 10.56 -190.07 -2.01 -21.22 15 19 H 0.26 14.75 8.31 -92.71 -0.77 13.98 15 20 H 0.00 0.08 8.14 -2.38 -0.02 0.06 15 21 H 0.00 0.09 8.14 -2.39 -0.02 0.07 15 22 H 0.06 2.43 7.95 -2.38 -0.02 2.41 15 23 H 0.06 2.43 7.92 -2.39 -0.02 2.41 15 24 H 0.40 14.70 8.60 -92.71 -0.80 13.91 15 25 H 0.16 5.22 6.71 -2.91 -0.02 5.21 15 26 H 0.19 3.14 8.06 -2.91 -0.02 3.12 15 27 H 0.41 5.60 8.95 -92.71 -0.83 4.77 15 28 H 0.43 3.21 8.83 -92.71 -0.82 2.39 15 Total: -1.00 -65.62 250.82 -0.30 -65.92 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: -1.24 Total: 18.72 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: 5.15 Total: 1.23 kcal Atomic # 7 Polarization: -124.65 SS G_CDS: -6.23 Total: -130.88 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -65.62 -0.30 -65.92 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306444119.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.945 kcal (2) G-P(sol) polarization free energy of solvation -65.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds