Wall clock time and date at job start Mon Mar 30 2020 02:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.46856 * 2 1 4 4 C 1.50699 * 109.47038 * 119.99962 * 2 1 3 5 5 H 1.08002 * 119.99846 * 119.99578 * 4 2 1 6 6 C 1.37875 * 119.99922 * 300.00061 * 4 2 1 7 7 N 1.31512 * 120.00229 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99540 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46888 * 90.00392 * 8 6 4 10 10 H 1.48504 * 109.46952 * 209.99738 * 8 6 4 11 11 H 1.48491 * 109.47516 * 329.99799 * 8 6 4 12 12 C 1.50695 * 109.47012 * 240.00188 * 2 1 3 13 13 O 1.21345 * 120.00169 * 270.00158 * 12 2 1 14 14 C 1.46507 * 120.00086 * 89.99942 * 12 2 1 15 15 C 1.37847 * 126.37027 * 179.97438 * 14 12 2 16 16 N 1.35209 * 106.67271 * 180.02562 * 15 14 12 17 17 C 1.46501 * 126.06800 * 180.02562 * 16 15 14 18 18 C 1.35902 * 107.86550 * 359.97438 * 16 15 14 19 19 N 1.30074 * 109.30681 * 359.97438 * 18 16 15 20 20 H 1.08994 * 109.47139 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.46652 * 299.99791 * 1 2 3 22 22 H 1.09002 * 109.46888 * 59.99563 * 1 2 3 23 23 H 0.97006 * 119.99860 * 179.97438 * 7 6 4 24 24 H 1.08002 * 126.66702 * 359.97438 * 15 14 12 25 25 H 1.09000 * 109.47379 * 270.02397 * 17 16 15 26 26 H 1.09002 * 109.46921 * 30.01842 * 17 16 15 27 27 H 1.08998 * 109.47384 * 150.02204 * 17 16 15 28 28 H 1.08002 * 125.34178 * 180.26738 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8302 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.6297 -0.5459 4.4123 10 1 1.3431 -0.9493 5.1120 11 1 2.4858 -2.5662 3.7119 12 6 2.0324 -0.7103 -1.2305 13 8 2.2346 -1.9065 -1.2005 14 6 2.2765 0.0432 -2.4630 15 6 2.7336 -0.4701 -3.6579 16 7 2.8146 0.5681 -4.5203 17 6 3.2544 0.4976 -5.9160 18 6 2.4144 1.6883 -3.8631 19 7 2.0936 1.3785 -2.6412 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 0.7089 1.1614 3.4845 24 1 2.9801 -1.5011 -3.8648 25 1 4.3324 0.6507 -5.9654 26 1 3.0074 -0.4818 -6.3258 27 1 2.7506 1.2715 -6.4952 28 1 2.3656 2.6792 -4.2899 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306489915.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:45 Heat of formation + Delta-G solvation = 20.673486 kcal Electronic energy + Delta-G solvation = -13213.427098 eV Core-core repulsion = 10844.800505 eV Total energy + Delta-G solvation = -2368.626594 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.73474 -37.94740 -33.96497 -33.50536 -30.34577 -29.34855 -27.21061 -24.99637 -23.73878 -21.28053 -20.66208 -18.49365 -16.82671 -16.03578 -15.66891 -14.88052 -14.55267 -13.95842 -13.62732 -13.48320 -12.99779 -12.90088 -12.53836 -12.22952 -11.34152 -10.90864 -10.61631 -10.49372 -10.02247 -9.95123 -9.84583 -9.52281 -8.76980 -8.39867 -8.22910 -8.14657 -5.86985 -3.91668 1.88374 2.76127 2.80223 3.41331 3.46579 3.53439 4.14322 4.52061 4.56835 4.76853 4.90035 4.94657 5.14143 5.36566 5.45999 5.65663 6.24071 6.64096 6.86499 6.98516 7.16853 7.25844 7.30854 7.78023 7.94287 8.15710 8.23205 8.45988 8.87997 9.12643 9.71343 11.19708 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.061333 B = 0.007724 C = 0.007354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.411030 B = 3624.315198 C = 3806.751210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.015 3.985 3 H 0.059 0.941 4 C -0.504 4.504 5 H 0.064 0.936 6 C 0.060 3.940 7 N -0.892 5.892 8 Si 0.895 3.105 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.442 3.558 13 O -0.476 6.476 14 C -0.069 4.069 15 C 0.006 3.994 16 N -0.466 5.466 17 C 0.073 3.927 18 C 0.165 3.835 19 N -0.436 5.436 20 H 0.026 0.974 21 H 0.091 0.909 22 H 0.014 0.986 23 H 0.259 0.741 24 H 0.183 0.817 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.233 1.650 -16.047 16.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.004 4.004 3 H 0.077 0.923 4 C -0.543 4.543 5 H 0.082 0.918 6 C -0.141 4.141 7 N -0.531 5.531 8 Si 0.723 3.277 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.320 3.680 13 O -0.351 6.351 14 C -0.197 4.197 15 C -0.132 4.132 16 N -0.149 5.149 17 C -0.070 4.070 18 C -0.118 4.118 19 N -0.154 5.154 20 H 0.046 0.954 21 H 0.110 0.890 22 H 0.033 0.967 23 H 0.069 0.931 24 H 0.200 0.800 25 H 0.095 0.905 26 H 0.103 0.897 27 H 0.106 0.894 28 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 3.008 1.668 -15.398 15.777 hybrid contribution 0.659 -0.766 -0.010 1.011 sum 3.667 0.902 -15.408 15.864 Atomic orbital electron populations 1.21575 0.96097 0.99305 1.00987 1.19022 0.94262 0.97685 0.89470 0.92264 1.21129 1.31148 1.12304 0.89696 0.91789 1.24928 0.95189 0.95052 0.98893 1.69901 1.36961 1.22978 1.23245 0.86533 0.78441 0.80226 0.82467 1.20756 1.21271 1.19832 1.22380 0.71290 0.87358 0.86967 1.90378 1.42079 1.17145 1.85472 1.22349 1.09568 0.91210 0.96612 1.23158 1.05323 0.94031 0.90663 1.45299 1.49464 1.08657 1.11462 1.22051 1.01222 1.04561 0.79164 1.25258 1.04426 0.92648 0.89471 1.70755 1.17008 1.13067 1.14612 0.95435 0.88994 0.96691 0.93072 0.80010 0.90506 0.89693 0.89372 0.77713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.20 8.95 37.16 0.33 -2.87 15 2 C 0.01 0.40 2.47 -92.92 -0.23 0.17 15 3 H 0.06 1.74 7.93 -51.93 -0.41 1.32 15 4 C -0.50 -15.11 8.32 -34.44 -0.29 -15.40 15 5 H 0.06 1.96 7.14 -52.49 -0.37 1.59 15 6 C 0.06 1.76 5.30 -17.82 -0.09 1.66 15 7 N -0.89 -26.53 11.32 55.43 0.63 -25.91 15 8 Si 0.90 22.52 29.54 -169.99 -5.02 17.50 15 9 H -0.28 -6.96 7.11 56.52 0.40 -6.56 15 10 H -0.29 -7.06 7.11 56.52 0.40 -6.66 15 11 H -0.27 -6.87 7.11 56.52 0.40 -6.47 15 12 C 0.44 11.08 6.17 -30.98 -0.19 10.89 15 13 O -0.48 -12.57 16.49 5.50 0.09 -12.48 15 14 C -0.07 -1.46 6.93 -82.85 -0.57 -2.03 15 15 C 0.01 0.09 11.33 -16.21 -0.18 -0.09 15 16 N -0.47 -5.81 3.12 -125.41 -0.39 -6.20 15 17 C 0.07 0.47 11.14 59.85 0.67 1.13 15 18 C 0.16 2.33 12.53 -89.94 -1.13 1.21 15 19 N -0.44 -8.64 11.01 -10.90 -0.12 -8.76 15 20 H 0.03 0.70 8.14 -51.93 -0.42 0.28 15 21 H 0.09 2.58 6.07 -51.93 -0.32 2.26 15 22 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 15 23 H 0.26 7.31 8.31 -40.82 -0.34 6.97 15 24 H 0.18 2.52 8.06 -52.49 -0.42 2.10 15 25 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 15 26 H 0.08 0.45 8.14 -51.93 -0.42 0.02 15 27 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 15 28 H 0.21 1.91 8.06 -52.49 -0.42 1.49 15 LS Contribution 252.22 15.07 3.80 3.80 Total: -1.00 -35.28 252.22 -5.90 -41.17 By element: Atomic # 1 Polarization: -0.61 SS G_CDS: -3.20 Total: -3.80 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: -1.69 Total: -5.32 kcal Atomic # 7 Polarization: -40.98 SS G_CDS: 0.12 Total: -40.86 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: 0.09 Total: -12.48 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -35.28 -5.90 -41.17 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306489915.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.848 kcal (2) G-P(sol) polarization free energy of solvation -35.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds