Wall clock time and date at job start Mon Mar 30 2020 02:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50698 * 109.47240 * 2 1 4 4 C 1.38271 * 119.99018 * 270.27784 * 3 2 1 5 5 C 1.38219 * 120.05287 * 180.27975 * 4 3 2 6 6 C 1.38227 * 120.02402 * 359.44048 * 5 4 3 7 7 C 1.50699 * 120.01020 * 180.30126 * 6 5 4 8 8 C 1.50695 * 109.47108 * 100.00488 * 7 6 5 9 9 H 1.08009 * 120.00076 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00136 * 179.97438 * 8 7 6 11 11 N 1.31511 * 120.00275 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 120.00113 * 179.97438 * 10 8 7 13 13 H 1.48502 * 109.47137 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.47062 * 119.99966 * 12 10 8 15 15 H 1.48503 * 109.47215 * 240.00218 * 12 10 8 16 16 C 1.38435 * 119.97401 * 0.28161 * 6 5 4 17 17 F 1.35097 * 120.02386 * 180.02562 * 16 6 5 18 18 C 1.38173 * 119.98826 * 90.00173 * 3 2 1 19 19 H 1.09000 * 109.46656 * 300.00087 * 1 2 3 20 20 H 1.09000 * 109.46988 * 59.99731 * 1 2 3 21 21 H 1.08996 * 109.47418 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47376 * 240.00472 * 2 1 3 23 23 H 1.09000 * 109.46988 * 120.00269 * 2 1 3 24 24 H 1.08000 * 119.97453 * 359.97438 * 4 3 2 25 25 H 1.08002 * 119.99072 * 179.72656 * 5 4 3 26 26 H 1.08997 * 109.46929 * 220.00365 * 7 6 5 27 27 H 1.08996 * 109.47448 * 339.99871 * 7 6 5 28 28 H 0.96994 * 120.00343 * 179.97438 * 11 10 8 29 29 H 1.08004 * 120.01046 * 0.02562 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2573 2.0743 -1.1976 5 6 2.7235 3.3755 -1.1991 6 6 2.9545 4.0289 -0.0031 7 6 3.4564 5.4498 -0.0052 8 6 2.3045 6.3898 0.2412 9 1 1.3085 5.9974 0.3845 10 6 2.5221 7.7506 0.2837 11 7 3.7349 8.2284 0.1097 12 14 1.0941 8.9157 0.5884 13 1 -0.1572 8.1330 0.7518 14 1 1.3508 9.7012 1.8223 15 1 0.9537 9.8392 -0.5661 16 6 2.7242 3.3775 1.1965 17 9 2.9491 4.0153 2.3661 18 6 2.2626 2.0719 1.1968 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 1.8934 -0.5138 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 2.0732 1.5661 -2.1325 25 1 2.9031 3.8835 -2.1351 26 1 4.2007 5.5733 0.7814 27 1 3.9082 5.6742 -0.9713 28 1 3.8880 9.1857 0.1392 29 1 2.0830 1.5626 2.1321 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306564424.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:38 Heat of formation + Delta-G solvation = -64.839441 kcal Electronic energy + Delta-G solvation = -13057.214103 eV Core-core repulsion = 10664.959429 eV Total energy + Delta-G solvation = -2392.254674 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -49.69008 -40.15882 -36.07745 -34.57460 -31.91581 -31.37800 -28.56394 -25.64591 -23.71756 -23.39685 -21.53556 -18.61852 -17.85678 -17.38113 -16.87268 -16.42285 -16.09336 -15.14804 -14.85040 -14.51822 -14.34313 -14.02998 -13.89240 -13.40155 -13.16083 -12.76167 -12.66101 -12.37400 -12.24863 -12.02665 -11.71450 -11.54019 -11.34929 -10.65742 -9.71794 -9.28816 -8.24631 -6.38439 0.34664 0.40868 1.35751 1.36987 1.50429 2.36044 2.76557 3.05939 3.47792 3.88958 3.93793 4.22459 4.33555 4.38932 4.56454 4.61261 4.73091 5.02213 5.10549 5.13338 5.16762 5.25038 5.32346 5.43147 5.47168 5.66343 5.67960 5.78306 6.04721 6.17475 6.72345 7.29913 8.85296 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.043639 B = 0.007946 C = 0.007850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.470959 B = 3523.101832 C = 3565.875195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.075 4.075 3 C -0.073 4.073 4 C -0.118 4.118 5 C -0.104 4.104 6 C -0.112 4.112 7 C 0.059 3.941 8 C -0.529 4.529 9 H 0.050 0.950 10 C 0.005 3.995 11 N -0.929 5.929 12 Si 0.968 3.032 13 H -0.266 1.266 14 H -0.276 1.276 15 H -0.270 1.270 16 C 0.065 3.935 17 F -0.157 7.157 18 C -0.152 4.152 19 H 0.044 0.956 20 H 0.053 0.947 21 H 0.078 0.922 22 H 0.093 0.907 23 H 0.082 0.918 24 H 0.159 0.841 25 H 0.131 0.869 26 H -0.005 1.005 27 H 0.013 0.987 28 H 0.267 0.733 29 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.482 -15.720 -1.768 16.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 C -0.073 4.073 4 C -0.136 4.136 5 C -0.122 4.122 6 C -0.113 4.113 7 C 0.022 3.978 8 C -0.567 4.567 9 H 0.068 0.932 10 C -0.194 4.194 11 N -0.569 5.569 12 Si 0.792 3.208 13 H -0.190 1.190 14 H -0.202 1.202 15 H -0.195 1.195 16 C 0.046 3.954 17 F -0.136 7.136 18 C -0.171 4.171 19 H 0.064 0.936 20 H 0.072 0.928 21 H 0.097 0.903 22 H 0.112 0.888 23 H 0.101 0.899 24 H 0.176 0.824 25 H 0.148 0.852 26 H 0.014 0.986 27 H 0.032 0.968 28 H 0.076 0.924 29 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -5.378 -15.544 -1.729 16.539 hybrid contribution -0.105 1.470 0.571 1.580 sum -5.483 -14.075 -1.158 15.149 Atomic orbital electron populations 1.21763 0.94227 1.02645 1.01778 1.20568 0.96420 0.89815 1.04393 1.20026 0.98121 0.97850 0.91296 1.21354 0.99383 0.93670 0.99158 1.21098 0.99207 0.95441 0.96500 1.20553 1.00280 0.97227 0.93208 1.17989 0.95555 0.88112 0.96103 1.21330 0.94155 0.91729 1.49479 0.93166 1.25943 0.98764 1.00062 0.94593 1.70078 1.22315 1.13900 1.50613 0.85358 0.78926 0.78363 0.78182 1.19040 1.20201 1.19515 1.17981 1.04214 0.92499 0.80716 1.91402 1.92713 1.82787 1.46712 1.21153 1.03042 0.92110 1.00795 0.93634 0.92824 0.90320 0.88844 0.89895 0.82357 0.85151 0.98647 0.96819 0.92432 0.83504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.89 71.98 0.71 -1.76 15 2 C -0.07 -1.34 6.06 29.85 0.18 -1.16 15 3 C -0.07 -1.99 5.13 -19.87 -0.10 -2.09 15 4 C -0.12 -3.38 9.70 22.27 0.22 -3.16 15 5 C -0.10 -3.93 9.67 22.26 0.22 -3.71 15 6 C -0.11 -5.21 5.08 -19.82 -0.10 -5.31 15 7 C 0.06 3.36 4.83 29.10 0.14 3.50 15 8 C -0.53 -31.77 9.09 25.60 0.23 -31.54 15 9 H 0.05 3.00 7.74 -2.91 -0.02 2.97 15 10 C 0.00 0.27 5.46 84.65 0.46 0.73 15 11 N -0.93 -57.67 13.29 21.45 0.28 -57.39 15 12 Si 0.97 45.77 29.54 68.60 2.03 47.80 15 13 H -0.27 -12.22 7.11 99.48 0.71 -11.51 15 14 H -0.28 -12.72 7.11 99.48 0.71 -12.02 15 15 H -0.27 -12.14 7.11 99.48 0.71 -11.43 15 16 C 0.06 2.83 7.24 22.37 0.16 2.99 15 17 F -0.16 -7.61 16.66 44.97 0.75 -6.86 15 18 C -0.15 -5.04 9.68 22.31 0.22 -4.83 15 19 H 0.04 0.87 8.14 -2.39 -0.02 0.85 15 20 H 0.05 0.95 8.14 -2.39 -0.02 0.93 15 21 H 0.08 0.97 8.14 -2.39 -0.02 0.95 15 22 H 0.09 1.32 8.09 -2.38 -0.02 1.30 15 23 H 0.08 1.31 8.09 -2.39 -0.02 1.29 15 24 H 0.16 3.26 8.06 -2.91 -0.02 3.24 15 25 H 0.13 4.65 8.04 -2.91 -0.02 4.63 15 26 H 0.00 -0.29 7.95 -2.39 -0.02 -0.31 15 27 H 0.01 0.79 8.00 -2.39 -0.02 0.77 15 28 H 0.27 15.38 8.31 -92.71 -0.77 14.61 15 29 H 0.15 4.05 8.06 -2.91 -0.02 4.03 15 Total: -1.00 -69.02 259.39 6.52 -62.50 By element: Atomic # 1 Polarization: -0.84 SS G_CDS: 1.12 Total: 0.29 kcal Atomic # 6 Polarization: -48.67 SS G_CDS: 2.33 Total: -46.34 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: 0.28 Total: -57.39 kcal Atomic # 9 Polarization: -7.61 SS G_CDS: 0.75 Total: -6.86 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -69.02 6.52 -62.50 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306564424.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.341 kcal (2) G-P(sol) polarization free energy of solvation -69.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds