Wall clock time and date at job start Mon Mar 30 2020 02:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.47192 * 2 1 4 4 C 1.38228 * 120.00852 * 265.25726 * 3 2 1 5 5 C 1.38229 * 120.02156 * 180.29817 * 4 3 2 6 6 C 1.38262 * 120.05298 * 359.71232 * 5 4 3 7 7 C 1.50699 * 119.98940 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.47280 * 270.02950 * 7 6 5 9 9 H 1.07997 * 120.00551 * 359.97438 * 8 7 6 10 10 C 1.37878 * 119.99557 * 179.97438 * 8 7 6 11 11 N 1.31518 * 119.99983 * 179.97438 * 10 8 7 12 12 Si 1.86799 * 120.00308 * 0.02562 * 10 8 7 13 13 H 1.48502 * 109.47157 * 89.99746 * 12 10 8 14 14 H 1.48496 * 109.47196 * 209.99586 * 12 10 8 15 15 H 1.48493 * 109.46914 * 329.99684 * 12 10 8 16 16 C 1.38177 * 120.02678 * 0.02562 * 6 5 4 17 17 C 1.38437 * 120.01912 * 84.99447 * 3 2 1 18 18 F 1.35104 * 120.02166 * 359.97438 * 17 3 2 19 19 H 1.09005 * 109.46665 * 60.00606 * 1 2 3 20 20 H 1.09002 * 109.46751 * 180.02562 * 1 2 3 21 21 H 1.08992 * 109.47131 * 300.00815 * 1 2 3 22 22 H 1.09001 * 109.47614 * 239.99457 * 2 1 3 23 23 H 1.09005 * 109.46665 * 119.99394 * 2 1 3 24 24 H 1.07993 * 119.98806 * 359.97438 * 4 3 2 25 25 H 1.08001 * 119.96987 * 179.70237 * 5 4 3 26 26 H 1.09005 * 109.46544 * 30.02937 * 7 6 5 27 27 H 1.08999 * 109.47119 * 150.02255 * 7 6 5 28 28 H 0.96997 * 120.00589 * 180.02562 * 11 10 8 29 29 H 1.07996 * 120.01639 * 180.02562 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3562 2.0396 -1.1929 5 6 2.8228 3.3407 -1.1927 6 6 2.9607 4.0267 -0.0002 7 6 3.4701 5.4450 -0.0016 8 6 4.9722 5.4393 0.1184 9 1 5.5049 4.5025 0.1891 10 6 5.6667 6.6303 0.1380 11 7 6.9776 6.6255 0.2432 12 14 4.7455 8.2508 0.0164 13 1 4.3906 8.7219 1.3793 14 1 5.6072 9.2614 -0.6478 15 1 3.5064 8.0573 -0.7787 16 6 2.6325 3.4120 1.1930 17 6 2.1647 2.1086 1.1941 18 9 1.8430 1.5068 2.3601 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8898 22 1 1.8935 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 2.2494 1.5045 -2.1249 25 1 3.0801 3.8218 -2.1248 26 1 3.1817 5.9336 -0.9324 27 1 3.0402 5.9863 0.8412 28 1 7.4662 7.4633 0.2574 29 1 2.7399 3.9481 2.1243 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306565692.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:40 Heat of formation + Delta-G solvation = -45.507537 kcal Electronic energy + Delta-G solvation = -12984.628515 eV Core-core repulsion = 10593.212135 eV Total energy + Delta-G solvation = -2391.416380 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.46720 -38.78584 -34.64430 -32.75305 -30.62209 -29.99439 -27.32540 -23.89406 -22.34300 -21.77843 -20.12364 -16.83597 -16.45667 -16.11434 -15.45808 -15.11256 -14.29511 -13.78970 -13.63349 -13.37811 -12.94489 -12.68819 -12.33568 -12.05548 -11.67274 -11.42242 -11.19621 -10.88609 -10.74625 -10.49804 -10.04744 -9.99948 -9.43123 -8.63238 -8.32401 -7.86167 -6.12014 -4.12178 1.71420 1.78276 3.25657 3.33648 3.35558 4.14540 4.37126 4.70842 4.91107 5.05855 5.19908 5.36862 5.42337 5.63641 5.65533 5.75149 5.88424 5.97920 6.09827 6.22397 6.41704 6.54897 6.67486 6.81651 6.89168 6.93859 7.43572 7.45956 7.63415 8.43289 8.92604 9.47357 11.00771 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.055810 B = 0.007362 C = 0.007176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.583409 B = 3802.481975 C = 3900.973805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.077 4.077 3 C -0.145 4.145 4 C -0.093 4.093 5 C -0.129 4.129 6 C -0.005 4.005 7 C 0.013 3.987 8 C -0.516 4.516 9 H 0.074 0.926 10 C 0.070 3.930 11 N -0.898 5.898 12 Si 0.878 3.122 13 H -0.275 1.275 14 H -0.286 1.286 15 H -0.264 1.264 16 C -0.153 4.153 17 C 0.094 3.906 18 F -0.148 7.148 19 H 0.055 0.945 20 H 0.054 0.946 21 H 0.054 0.946 22 H 0.071 0.929 23 H 0.069 0.931 24 H 0.122 0.878 25 H 0.126 0.874 26 H 0.032 0.968 27 H 0.026 0.974 28 H 0.265 0.735 29 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.499 -8.875 -1.627 14.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 C -0.146 4.146 4 C -0.111 4.111 5 C -0.147 4.147 6 C -0.006 4.006 7 C -0.024 4.024 8 C -0.554 4.554 9 H 0.093 0.907 10 C -0.132 4.132 11 N -0.536 5.536 12 Si 0.705 3.295 13 H -0.201 1.201 14 H -0.212 1.212 15 H -0.189 1.189 16 C -0.172 4.172 17 C 0.075 3.925 18 F -0.127 7.127 19 H 0.074 0.926 20 H 0.073 0.927 21 H 0.073 0.927 22 H 0.090 0.910 23 H 0.087 0.913 24 H 0.140 0.860 25 H 0.144 0.856 26 H 0.050 0.950 27 H 0.044 0.956 28 H 0.075 0.925 29 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.348 -8.782 -1.572 14.435 hybrid contribution -0.226 0.841 0.226 0.900 sum -11.574 -7.941 -1.346 14.101 Atomic orbital electron populations 1.21735 0.95078 1.01278 1.02144 1.20365 0.95952 0.92509 1.02647 1.19676 1.05647 0.97027 0.92263 1.20799 0.98915 0.94960 0.96403 1.21127 1.00539 0.94408 0.98605 1.20143 0.91112 0.97997 0.91303 1.18849 0.97566 0.88197 0.97750 1.20898 0.88419 0.94864 1.51236 0.90738 1.24997 0.94751 0.99050 0.94381 1.69895 1.06364 1.27221 1.50123 0.86796 0.80223 0.83644 0.78812 1.20111 1.21174 1.18882 1.21055 1.02761 0.93405 0.99984 1.17537 1.02266 0.92052 0.80681 1.91417 1.90749 1.83608 1.46881 0.92581 0.92689 0.92687 0.91036 0.91273 0.85959 0.85615 0.94974 0.95589 0.92503 0.85122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.90 37.16 0.37 -1.24 15 2 C -0.08 -0.98 5.84 -27.88 -0.16 -1.14 15 3 C -0.15 -2.32 5.14 -104.55 -0.54 -2.85 15 4 C -0.09 -1.46 9.68 -39.59 -0.38 -1.84 15 5 C -0.13 -2.35 9.70 -39.58 -0.38 -2.73 15 6 C -0.01 -0.11 5.07 -104.64 -0.53 -0.64 15 7 C 0.01 0.32 4.17 -29.04 -0.12 0.19 15 8 C -0.52 -14.48 9.65 -34.44 -0.33 -14.81 15 9 H 0.07 2.29 7.98 -52.49 -0.42 1.88 15 10 C 0.07 2.00 5.47 -17.82 -0.10 1.91 15 11 N -0.90 -27.27 13.96 55.43 0.77 -26.50 15 12 Si 0.88 21.05 27.47 -169.99 -4.67 16.38 15 13 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 14 H -0.29 -6.81 7.11 56.52 0.40 -6.40 15 15 H -0.26 -6.02 6.54 56.52 0.37 -5.65 15 16 C -0.15 -3.01 9.68 -39.51 -0.38 -3.39 15 17 C 0.09 1.68 7.24 -39.42 -0.29 1.39 15 18 F -0.15 -2.57 16.57 2.25 0.04 -2.54 15 19 H 0.06 0.60 8.14 -51.93 -0.42 0.18 15 20 H 0.05 0.50 8.14 -51.93 -0.42 0.08 15 21 H 0.05 0.66 8.14 -51.93 -0.42 0.23 15 22 H 0.07 0.79 8.05 -51.93 -0.42 0.37 15 23 H 0.07 0.88 7.79 -51.93 -0.40 0.48 15 24 H 0.12 1.55 8.06 -52.49 -0.42 1.12 15 25 H 0.13 2.15 8.06 -52.49 -0.42 1.73 15 26 H 0.03 0.73 7.14 -51.93 -0.37 0.36 15 27 H 0.03 0.59 7.51 -51.93 -0.39 0.20 15 28 H 0.27 7.51 8.31 -40.82 -0.34 7.17 15 29 H 0.13 2.50 8.06 -52.49 -0.42 2.08 15 LS Contribution 255.68 15.07 3.85 3.85 Total: -1.00 -29.67 255.68 -6.56 -36.23 By element: Atomic # 1 Polarization: 1.43 SS G_CDS: -3.71 Total: -2.27 kcal Atomic # 6 Polarization: -22.31 SS G_CDS: -2.85 Total: -25.16 kcal Atomic # 7 Polarization: -27.27 SS G_CDS: 0.77 Total: -26.50 kcal Atomic # 9 Polarization: -2.57 SS G_CDS: 0.04 Total: -2.54 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.67 Total: 16.38 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -29.67 -6.56 -36.23 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306565692.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.273 kcal (2) G-P(sol) polarization free energy of solvation -29.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds