Wall clock time and date at job start Mon Mar 30 2020 02:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 109.47192 * 2 1 4 4 C 1.38228 * 120.00852 * 265.25726 * 3 2 1 5 5 C 1.38229 * 120.02156 * 180.29817 * 4 3 2 6 6 C 1.38262 * 120.05298 * 359.71232 * 5 4 3 7 7 C 1.50699 * 119.98940 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.47280 * 270.02950 * 7 6 5 9 9 H 1.07997 * 120.00551 * 359.97438 * 8 7 6 10 10 C 1.37878 * 119.99557 * 179.97438 * 8 7 6 11 11 N 1.31518 * 119.99983 * 179.97438 * 10 8 7 12 12 Si 1.86799 * 120.00308 * 0.02562 * 10 8 7 13 13 H 1.48502 * 109.47157 * 89.99746 * 12 10 8 14 14 H 1.48496 * 109.47196 * 209.99586 * 12 10 8 15 15 H 1.48493 * 109.46914 * 329.99684 * 12 10 8 16 16 C 1.38177 * 120.02678 * 0.02562 * 6 5 4 17 17 C 1.38437 * 120.01912 * 84.99447 * 3 2 1 18 18 F 1.35104 * 120.02166 * 359.97438 * 17 3 2 19 19 H 1.09005 * 109.46665 * 60.00606 * 1 2 3 20 20 H 1.09002 * 109.46751 * 180.02562 * 1 2 3 21 21 H 1.08992 * 109.47131 * 300.00815 * 1 2 3 22 22 H 1.09001 * 109.47614 * 239.99457 * 2 1 3 23 23 H 1.09005 * 109.46665 * 119.99394 * 2 1 3 24 24 H 1.07993 * 119.98806 * 359.97438 * 4 3 2 25 25 H 1.08001 * 119.96987 * 179.70237 * 5 4 3 26 26 H 1.09005 * 109.46544 * 30.02937 * 7 6 5 27 27 H 1.08999 * 109.47119 * 150.02255 * 7 6 5 28 28 H 0.96997 * 120.00589 * 180.02562 * 11 10 8 29 29 H 1.07996 * 120.01639 * 180.02562 * 16 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3562 2.0396 -1.1929 5 6 2.8228 3.3407 -1.1927 6 6 2.9607 4.0267 -0.0002 7 6 3.4701 5.4450 -0.0016 8 6 4.9722 5.4393 0.1184 9 1 5.5049 4.5025 0.1891 10 6 5.6667 6.6303 0.1380 11 7 6.9776 6.6255 0.2432 12 14 4.7455 8.2508 0.0164 13 1 4.3906 8.7219 1.3793 14 1 5.6072 9.2614 -0.6478 15 1 3.5064 8.0573 -0.7787 16 6 2.6325 3.4120 1.1930 17 6 2.1647 2.1086 1.1941 18 9 1.8430 1.5068 2.3601 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8898 22 1 1.8935 -0.5139 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 2.2494 1.5045 -2.1249 25 1 3.0801 3.8218 -2.1248 26 1 3.1817 5.9336 -0.9324 27 1 3.0402 5.9863 0.8412 28 1 7.4662 7.4633 0.2574 29 1 2.7399 3.9481 2.1243 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306565692.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:40 Heat of formation + Delta-G solvation = -61.692724 kcal Electronic energy + Delta-G solvation = -12985.330357 eV Core-core repulsion = 10593.212135 eV Total energy + Delta-G solvation = -2392.118222 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.86301 -40.18203 -36.08955 -34.62240 -32.20140 -31.42144 -28.90652 -25.43368 -23.72862 -23.26733 -21.55324 -18.99630 -17.93106 -17.48833 -16.77986 -16.50010 -16.26899 -15.13083 -14.82540 -14.65322 -14.53240 -14.28702 -13.71640 -13.59259 -13.37028 -12.73415 -12.60738 -12.27952 -12.24163 -11.84171 -11.77918 -11.64674 -11.45016 -10.80551 -9.74239 -9.31362 -8.31390 -6.37504 0.29527 0.38156 1.37384 1.38523 1.50568 2.34549 2.72092 3.02763 3.33857 3.76572 3.85151 4.13634 4.26974 4.47295 4.50488 4.53200 4.68638 4.92795 4.98735 5.04351 5.07317 5.12939 5.21911 5.36951 5.39085 5.51146 5.53908 5.84816 6.06005 6.23907 6.68730 7.26137 8.85116 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.055810 B = 0.007362 C = 0.007176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.583409 B = 3802.481975 C = 3900.973805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.078 4.078 3 C -0.135 4.135 4 C -0.083 4.083 5 C -0.135 4.135 6 C -0.038 4.038 7 C 0.019 3.981 8 C -0.523 4.523 9 H 0.027 0.973 10 C 0.008 3.992 11 N -0.949 5.949 12 Si 0.952 3.048 13 H -0.268 1.268 14 H -0.282 1.282 15 H -0.241 1.241 16 C -0.170 4.170 17 C 0.081 3.919 18 F -0.147 7.147 19 H 0.062 0.938 20 H 0.078 0.922 21 H 0.040 0.960 22 H 0.097 0.903 23 H 0.067 0.933 24 H 0.164 0.836 25 H 0.135 0.865 26 H 0.042 0.958 27 H 0.030 0.970 28 H 0.268 0.732 29 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.581 -9.569 -2.824 16.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.116 4.116 3 C -0.136 4.136 4 C -0.100 4.100 5 C -0.153 4.153 6 C -0.039 4.039 7 C -0.018 4.018 8 C -0.561 4.561 9 H 0.046 0.954 10 C -0.189 4.189 11 N -0.589 5.589 12 Si 0.775 3.225 13 H -0.193 1.193 14 H -0.208 1.208 15 H -0.164 1.164 16 C -0.189 4.189 17 C 0.062 3.938 18 F -0.126 7.126 19 H 0.081 0.919 20 H 0.097 0.903 21 H 0.059 0.941 22 H 0.115 0.885 23 H 0.085 0.915 24 H 0.181 0.819 25 H 0.153 0.847 26 H 0.060 0.940 27 H 0.048 0.952 28 H 0.077 0.923 29 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -13.449 -9.495 -2.767 16.694 hybrid contribution 0.446 0.896 0.614 1.174 sum -13.004 -8.599 -2.153 15.737 Atomic orbital electron populations 1.21720 0.93664 1.02764 1.01794 1.20503 0.97069 0.90130 1.03861 1.20159 1.03518 0.98527 0.91364 1.21195 0.96964 0.93888 0.97969 1.21332 1.00420 0.95579 0.97969 1.20007 0.93749 0.97266 0.92841 1.18695 0.94321 0.90632 0.98128 1.21133 0.91072 0.93150 1.50759 0.95416 1.26000 0.95574 1.03486 0.93870 1.70056 1.08450 1.28523 1.51838 0.85632 0.79472 0.77987 0.79452 1.19277 1.20763 1.16445 1.21062 1.03786 0.94533 0.99505 1.17660 1.02755 0.91736 0.81622 1.91413 1.90753 1.83409 1.47007 0.91915 0.90348 0.94090 0.88488 0.91469 0.81874 0.84746 0.94005 0.95201 0.92281 0.85960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.90 71.98 0.71 -1.95 15 2 C -0.08 -1.71 5.84 29.85 0.17 -1.54 15 3 C -0.13 -3.97 5.14 -19.82 -0.10 -4.07 15 4 C -0.08 -2.35 9.68 22.27 0.22 -2.13 15 5 C -0.13 -4.75 9.70 22.27 0.22 -4.53 15 6 C -0.04 -1.60 5.07 -19.87 -0.10 -1.70 15 7 C 0.02 0.91 4.17 29.10 0.12 1.03 15 8 C -0.52 -30.25 9.65 25.60 0.25 -30.00 15 9 H 0.03 1.80 7.98 -2.91 -0.02 1.77 15 10 C 0.01 0.46 5.47 84.65 0.46 0.92 15 11 N -0.95 -59.37 13.96 21.45 0.30 -59.07 15 12 Si 0.95 43.36 27.47 68.60 1.88 45.24 15 13 H -0.27 -11.80 7.11 99.48 0.71 -11.09 15 14 H -0.28 -12.58 7.11 99.48 0.71 -11.88 15 15 H -0.24 -10.01 6.54 99.48 0.65 -9.36 15 16 C -0.17 -6.77 9.68 22.31 0.22 -6.56 15 17 C 0.08 2.86 7.24 22.38 0.16 3.02 15 18 F -0.15 -5.03 16.57 44.97 0.75 -4.29 15 19 H 0.06 1.10 8.14 -2.38 -0.02 1.08 15 20 H 0.08 1.12 8.14 -2.39 -0.02 1.10 15 21 H 0.04 0.88 8.14 -2.39 -0.02 0.86 15 22 H 0.10 1.67 8.05 -2.39 -0.02 1.65 15 23 H 0.07 1.52 7.79 -2.38 -0.02 1.50 15 24 H 0.16 3.31 8.06 -2.91 -0.02 3.29 15 25 H 0.13 4.40 8.06 -2.91 -0.02 4.37 15 26 H 0.04 1.86 7.14 -2.38 -0.02 1.85 15 27 H 0.03 1.36 7.51 -2.39 -0.02 1.34 15 28 H 0.27 15.58 8.31 -92.71 -0.77 14.81 15 29 H 0.12 4.88 8.06 -2.91 -0.02 4.86 15 Total: -1.00 -65.80 255.68 6.32 -59.47 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: 1.07 Total: 6.15 kcal Atomic # 6 Polarization: -49.83 SS G_CDS: 2.32 Total: -47.50 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: 0.30 Total: -59.07 kcal Atomic # 9 Polarization: -5.03 SS G_CDS: 0.75 Total: -4.29 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 1.88 Total: 45.24 kcal Total: -65.80 6.32 -59.47 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306565692.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.218 kcal (2) G-P(sol) polarization free energy of solvation -65.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds