Wall clock time and date at job start Mon Mar 30 2020 02:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30685 * 1 3 3 Si 1.86799 * 120.00022 * 2 1 4 4 H 1.48503 * 109.47237 * 274.98398 * 3 2 1 5 5 H 1.48505 * 109.47168 * 34.97624 * 3 2 1 6 6 H 1.48501 * 109.47667 * 154.97824 * 3 2 1 7 7 C 1.40243 * 120.00259 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99952 * 174.01225 * 7 2 1 9 9 C 1.40129 * 120.00109 * 354.29157 * 7 2 1 10 10 N 1.33025 * 126.65347 * 5.41974 * 9 7 2 11 11 N 1.28561 * 109.35819 * 179.97438 * 10 9 7 12 12 C 1.31320 * 110.20482 * 0.02562 * 11 10 9 13 13 C 1.50694 * 126.08133 * 180.02562 * 12 11 10 14 14 N 1.46897 * 109.47199 * 275.02267 * 13 12 11 15 15 C 1.47479 * 111.00247 * 74.02599 * 14 13 12 16 16 C 1.53510 * 87.93644 * 138.70522 * 15 14 13 17 17 C 1.47478 * 111.00321 * 169.99888 * 14 13 12 18 18 N 1.35300 * 107.84054 * 359.76513 * 12 11 10 19 19 H 0.96995 * 127.04660 * 180.25817 * 18 12 11 20 20 H 0.96999 * 120.00219 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.46795 * 35.02000 * 13 12 11 22 22 H 1.09004 * 109.47514 * 155.01576 * 13 12 11 23 23 H 1.09003 * 113.47666 * 253.47694 * 15 14 13 24 24 H 1.09008 * 113.47435 * 23.93443 * 15 14 13 25 25 H 1.09000 * 114.17244 * 220.33425 * 16 15 14 26 26 H 1.08995 * 114.16869 * 87.61732 * 16 15 14 27 27 H 1.09010 * 113.47280 * 336.05975 * 17 14 13 28 28 H 1.08997 * 113.48179 * 106.52529 * 17 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 2.3830 2.1073 -1.3948 5 1 1.4948 2.6200 0.8026 6 1 3.5871 1.4122 0.5922 7 6 2.0081 -1.2145 0.0005 8 1 3.0837 -1.2170 -0.0970 9 6 1.3128 -2.4250 0.1218 10 7 -0.0078 -2.5836 0.1428 11 7 -0.2851 -3.8330 0.2656 12 6 0.8204 -4.5387 0.3301 13 6 0.9104 -6.0360 0.4751 14 7 0.8234 -6.3964 1.8965 15 6 -0.5564 -6.2487 2.3958 16 6 -0.3589 -7.5615 3.1665 17 6 0.6685 -7.8534 2.0638 18 7 1.8644 -3.6831 0.2375 19 1 2.8077 -3.9085 0.2511 20 1 -0.4850 0.8400 -0.0004 21 1 0.0898 -6.5036 -0.0692 22 1 1.8604 -6.3840 0.0694 23 1 -0.6938 -5.3820 3.0424 24 1 -1.3112 -6.3146 1.6120 25 1 -1.2265 -8.2213 3.1541 26 1 0.0748 -7.4357 4.1585 27 1 0.2406 -8.3476 1.1914 28 1 1.5691 -8.3469 2.4290 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306707743.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:08 Heat of formation + Delta-G solvation = 100.961185 kcal Electronic energy + Delta-G solvation = -13258.998674 eV Core-core repulsion = 10926.146367 eV Total energy + Delta-G solvation = -2332.852306 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.72720 -39.43678 -33.61033 -31.99469 -31.15642 -28.42304 -25.88733 -25.41253 -23.64774 -20.76162 -19.80398 -19.59762 -17.32632 -16.02684 -15.69350 -15.52770 -14.88891 -14.08836 -13.58522 -13.36811 -12.73863 -12.41672 -11.79095 -11.40296 -11.36746 -11.20206 -10.93650 -10.68844 -10.38160 -10.31404 -9.56944 -9.37589 -8.92425 -8.63325 -8.27070 -7.52713 -6.55311 -4.50876 2.99344 3.11648 3.15469 3.49474 3.95235 4.29495 4.50454 4.63407 4.74200 5.04149 5.42757 5.43371 5.51395 5.56704 5.73867 5.77796 5.87694 6.00091 6.19717 6.32966 6.58831 7.01301 7.19066 7.30358 7.37687 7.61319 8.27823 8.31392 8.83251 9.12228 10.38386 10.84335 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.075323 B = 0.007083 C = 0.006918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 371.644816 B = 3952.172069 C = 4046.691987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.740 5.740 2 C 0.080 3.920 3 Si 0.918 3.082 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.458 4.458 8 H 0.081 0.919 9 C 0.337 3.663 10 N -0.339 5.339 11 N -0.295 5.295 12 C 0.068 3.932 13 C 0.129 3.871 14 N -0.471 5.471 15 C 0.014 3.986 16 C -0.151 4.151 17 C -0.005 4.005 18 N -0.629 5.629 19 H 0.402 0.598 20 H 0.277 0.723 21 H 0.057 0.943 22 H 0.074 0.926 23 H 0.080 0.920 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.088 0.912 27 H 0.066 0.934 28 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.885 -9.449 2.706 10.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.365 5.365 2 C -0.144 4.144 3 Si 0.742 3.258 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.498 4.498 8 H 0.100 0.900 9 C 0.091 3.909 10 N -0.187 5.187 11 N -0.139 5.139 12 C -0.198 4.198 13 C -0.001 4.001 14 N -0.195 5.195 15 C -0.115 4.115 16 C -0.188 4.188 17 C -0.134 4.134 18 N -0.247 5.247 19 H 0.237 0.763 20 H 0.088 0.912 21 H 0.075 0.925 22 H 0.092 0.908 23 H 0.099 0.901 24 H 0.093 0.907 25 H 0.090 0.910 26 H 0.106 0.894 27 H 0.084 0.916 28 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.550 -8.620 2.944 9.240 hybrid contribution 1.759 0.024 -0.518 1.834 sum 3.309 -8.596 2.426 9.525 Atomic orbital electron populations 1.69963 1.07059 1.28398 1.31054 1.25760 0.94833 1.00559 0.93296 0.86160 0.80147 0.80598 0.78895 1.19580 1.20040 1.18720 1.18141 0.94148 0.87483 1.50074 0.90043 1.21582 0.90030 0.84148 0.95173 1.75582 1.09300 1.04669 1.29120 1.73974 1.23773 1.00919 1.15267 1.23197 0.85994 0.93216 1.17424 1.20489 1.01135 0.88626 0.89829 1.69037 1.24946 1.08855 1.16650 1.23620 0.91030 0.98040 0.98805 1.23141 0.99029 0.98035 0.98629 1.23758 0.99449 0.91837 0.98365 1.43790 1.08401 1.07845 1.64699 0.76273 0.91175 0.92472 0.90757 0.90102 0.90721 0.90991 0.89363 0.91592 0.90193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.88 11.97 55.56 0.67 -20.22 15 2 C 0.08 2.11 5.49 -17.29 -0.09 2.02 15 3 Si 0.92 19.04 29.57 -169.99 -5.03 14.02 15 4 H -0.27 -5.49 7.11 56.52 0.40 -5.09 15 5 H -0.28 -5.62 7.11 56.52 0.40 -5.22 15 6 H -0.26 -5.31 7.11 56.52 0.40 -4.91 15 7 C -0.46 -12.47 9.46 -38.12 -0.36 -12.83 15 8 H 0.08 2.02 7.86 -52.49 -0.41 1.60 15 9 C 0.34 9.55 7.72 -155.22 -1.20 8.35 15 10 N -0.34 -10.38 10.55 31.22 0.33 -10.05 15 11 N -0.30 -8.17 12.20 32.88 0.40 -7.77 15 12 C 0.07 1.60 7.43 -154.50 -1.15 0.45 15 13 C 0.13 2.33 5.45 -4.98 -0.03 2.30 15 14 N -0.47 -7.95 6.40 -246.13 -1.58 -9.53 15 15 C 0.01 0.23 7.29 -7.55 -0.06 0.17 15 16 C -0.15 -1.83 8.47 -26.20 -0.22 -2.05 15 17 C 0.00 -0.06 7.70 -7.55 -0.06 -0.12 15 18 N -0.63 -15.09 6.29 -9.38 -0.06 -15.15 15 19 H 0.40 8.11 8.96 -40.82 -0.37 7.75 15 20 H 0.28 7.05 8.29 -40.82 -0.34 6.71 15 21 H 0.06 0.98 7.56 -51.93 -0.39 0.58 15 22 H 0.07 1.17 8.14 -51.93 -0.42 0.75 15 23 H 0.08 1.49 8.14 -51.93 -0.42 1.06 15 24 H 0.07 1.25 7.70 -51.92 -0.40 0.85 15 25 H 0.07 0.73 8.14 -51.93 -0.42 0.31 15 26 H 0.09 1.04 8.14 -51.93 -0.42 0.61 15 27 H 0.07 0.74 7.77 -51.92 -0.40 0.34 15 28 H 0.08 0.90 8.14 -51.93 -0.42 0.48 15 LS Contribution 246.18 15.07 3.71 3.71 Total: -1.00 -32.93 246.18 -7.94 -40.87 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -3.22 Total: 5.83 kcal Atomic # 6 Polarization: 1.46 SS G_CDS: -3.16 Total: -1.71 kcal Atomic # 7 Polarization: -62.48 SS G_CDS: -0.24 Total: -62.72 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.02 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -32.93 -7.94 -40.87 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306707743.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.828 kcal (2) G-P(sol) polarization free energy of solvation -32.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds