Wall clock time and date at job start Mon Mar 30 2020 02:08:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47233 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46997 * 120.00173 * 8 6 4 11 11 H 1.48501 * 109.47364 * 240.00497 * 8 6 4 12 12 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 13 13 O 1.21278 * 119.99879 * 94.99936 * 12 2 1 14 14 C 1.46994 * 120.00283 * 274.99998 * 12 2 1 15 15 C 1.41723 * 126.49908 * 179.97438 * 14 12 2 16 16 C 1.35279 * 105.53886 * 179.97438 * 15 14 12 17 17 N 1.35646 * 107.21103 * 0.02562 * 16 15 14 18 18 C 1.46495 * 124.91052 * 179.97438 * 17 16 15 19 19 N 1.28475 * 110.17171 * 359.74207 * 17 16 15 20 20 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 21 21 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 23 23 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 24 24 H 1.07995 * 127.22943 * 0.02562 * 15 14 12 25 25 H 1.07994 * 126.39517 * 180.02562 * 16 15 14 26 26 H 1.09001 * 109.47040 * 90.00386 * 18 17 16 27 27 H 1.09003 * 109.46955 * 209.99908 * 18 17 16 28 28 H 1.08998 * 109.47656 * 329.99946 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 3.1455 -2.2874 -3.6040 10 1 1.1660 -1.5865 -4.8161 11 1 3.1465 -0.1871 -4.8166 12 6 2.0324 -0.7104 1.2304 13 8 2.3208 -1.8871 1.1759 14 6 2.1728 0.0228 2.4966 15 6 2.6286 -0.5051 3.7304 16 6 2.5905 0.5280 4.6029 17 7 2.1359 1.6105 3.9235 18 6 1.9437 2.9429 4.5012 19 7 1.9030 1.2993 2.6990 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 -0.8900 23 1 0.7093 1.1619 -3.4844 24 1 2.9416 -1.5190 3.9315 25 1 2.8698 0.4968 5.6456 26 1 2.8613 3.5214 4.3937 27 1 1.1312 3.4506 3.9814 28 1 1.6956 2.8483 5.5584 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306737447.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:38 Heat of formation + Delta-G solvation = 16.543171 kcal Electronic energy + Delta-G solvation = -13273.926571 eV Core-core repulsion = 10905.120873 eV Total energy + Delta-G solvation = -2368.805697 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.40913 -39.99064 -35.80528 -34.28921 -32.62590 -31.53569 -28.46945 -27.27335 -25.29968 -22.78091 -22.27595 -19.96821 -18.47888 -18.02084 -17.10630 -16.98046 -16.34874 -15.45112 -15.18899 -14.77561 -14.47577 -14.05017 -13.63100 -13.37945 -13.29702 -13.02538 -12.68853 -12.62781 -12.23648 -12.09728 -11.79708 -11.04120 -10.58286 -10.29197 -10.14793 -9.95982 -8.14244 -6.28032 0.38849 1.22882 1.40009 1.40902 1.55131 1.75952 2.28146 2.43224 3.13330 3.33589 3.73091 4.07054 4.44079 4.46913 4.65079 4.72821 4.74806 4.80938 4.86978 5.03485 5.04911 5.39374 5.50993 5.68345 5.91222 6.01070 6.21389 6.71393 6.79217 7.09844 7.39600 8.91887 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.051755 B = 0.008269 C = 0.007615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 540.877665 B = 3385.296283 C = 3675.855653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.009 3.991 3 H 0.036 0.964 4 C -0.536 4.536 5 H 0.048 0.952 6 C 0.018 3.982 7 N -0.912 5.912 8 Si 0.961 3.039 9 H -0.275 1.275 10 H -0.273 1.273 11 H -0.272 1.272 12 C 0.441 3.559 13 O -0.494 6.494 14 C -0.079 4.079 15 C -0.213 4.213 16 C 0.001 3.999 17 N -0.285 5.285 18 C 0.076 3.924 19 N -0.267 5.267 20 H 0.034 0.966 21 H 0.023 0.977 22 H 0.074 0.926 23 H 0.266 0.734 24 H 0.163 0.837 25 H 0.237 0.763 26 H 0.100 0.900 27 H 0.093 0.907 28 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.684 5.221 16.078 16.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.010 4.010 3 H 0.054 0.946 4 C -0.574 4.574 5 H 0.067 0.933 6 C -0.181 4.181 7 N -0.551 5.551 8 Si 0.786 3.214 9 H -0.200 1.200 10 H -0.198 1.198 11 H -0.197 1.197 12 C 0.320 3.680 13 O -0.368 6.368 14 C -0.235 4.235 15 C -0.241 4.241 16 C -0.141 4.141 17 N -0.076 5.076 18 C -0.062 4.062 19 N -0.106 5.106 20 H 0.053 0.947 21 H 0.042 0.958 22 H 0.093 0.907 23 H 0.075 0.925 24 H 0.180 0.820 25 H 0.253 0.747 26 H 0.118 0.882 27 H 0.111 0.889 28 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.353 5.800 15.427 16.537 hybrid contribution 0.492 -1.050 -0.668 1.338 sum 1.845 4.750 14.759 15.614 Atomic orbital electron populations 1.21396 0.95262 0.99025 1.00988 1.18995 0.95098 0.96244 0.90631 0.94612 1.21346 1.32090 1.12584 0.91367 0.93331 1.25697 0.95040 0.95686 1.01695 1.69990 1.37153 1.23667 1.24317 0.85459 0.78406 0.78581 0.78949 1.20004 1.19817 1.19749 1.22311 0.70956 0.86769 0.88007 1.90330 1.40894 1.18689 1.86857 1.22763 1.10696 0.92189 0.97818 1.22197 1.08141 1.02062 0.91685 1.23617 1.03716 0.85337 1.01403 1.46325 1.43886 1.12265 1.05091 1.22633 1.05275 0.77172 1.01151 1.73693 1.19424 1.15867 1.01629 0.94713 0.95814 0.90717 0.92518 0.81956 0.74716 0.88189 0.88867 0.84488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.77 8.95 71.98 0.64 -5.12 15 2 C 0.01 0.53 2.43 -12.29 -0.03 0.50 15 3 H 0.04 2.14 8.06 -2.39 -0.02 2.12 15 4 C -0.54 -32.86 8.33 25.60 0.21 -32.64 15 5 H 0.05 3.09 7.03 -2.91 -0.02 3.07 15 6 C 0.02 1.05 5.30 84.65 0.45 1.50 15 7 N -0.91 -54.14 11.32 21.45 0.24 -53.90 15 8 Si 0.96 46.25 29.54 68.60 2.03 48.28 15 9 H -0.28 -13.32 7.11 99.48 0.71 -12.61 15 10 H -0.27 -12.58 7.11 99.48 0.71 -11.88 15 11 H -0.27 -12.49 7.11 99.48 0.71 -11.79 15 12 C 0.44 22.98 6.24 27.98 0.17 23.15 15 13 O -0.49 -27.53 16.38 -3.02 -0.05 -27.58 15 14 C -0.08 -3.38 7.05 42.27 0.30 -3.08 15 15 C -0.21 -7.00 10.80 22.45 0.24 -6.76 15 16 C 0.00 0.03 11.48 83.42 0.96 0.99 15 17 N -0.29 -7.40 3.72 -369.03 -1.37 -8.77 15 18 C 0.08 0.98 11.32 127.77 1.45 2.42 15 19 N -0.27 -10.27 11.76 -48.45 -0.57 -10.84 15 20 H 0.03 1.64 8.14 -2.39 -0.02 1.62 15 21 H 0.02 1.22 8.14 -2.39 -0.02 1.20 15 22 H 0.07 4.21 6.07 -2.38 -0.01 4.20 15 23 H 0.27 14.72 8.31 -92.71 -0.77 13.95 15 24 H 0.16 4.92 8.06 -2.91 -0.02 4.90 15 25 H 0.24 2.28 8.06 -2.91 -0.02 2.26 15 26 H 0.10 1.00 8.14 -2.39 -0.02 0.98 15 27 H 0.09 1.31 8.14 -2.39 -0.02 1.29 15 28 H 0.14 0.56 8.13 -2.39 -0.02 0.54 15 Total: -1.00 -77.83 252.23 5.83 -72.00 By element: Atomic # 1 Polarization: -1.30 SS G_CDS: 1.15 Total: -0.15 kcal Atomic # 6 Polarization: -23.44 SS G_CDS: 4.40 Total: -19.04 kcal Atomic # 7 Polarization: -71.81 SS G_CDS: -1.70 Total: -73.51 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.05 Total: -27.58 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Total: -77.83 5.83 -72.00 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306737447.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.544 kcal (2) G-P(sol) polarization free energy of solvation -77.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds