Wall clock time and date at job start Mon Mar 30 2020 02:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47347 * 59.99862 * 8 6 4 10 10 H 1.48503 * 109.46845 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47399 * 299.99813 * 8 6 4 12 12 N 1.46902 * 109.47094 * 239.99537 * 2 1 3 13 13 N 1.36602 * 110.99810 * 90.00382 * 12 2 1 14 14 C 1.38403 * 120.00368 * 180.02562 * 13 12 2 15 15 N 1.32495 * 119.21270 * 359.72814 * 14 13 12 16 16 C 1.32277 * 120.73630 * 179.71863 * 15 14 13 17 17 C 1.38606 * 119.19919 * 0.54389 * 16 15 14 18 18 C 1.38607 * 118.55752 * 359.72897 * 17 16 15 19 19 N 1.32274 * 119.19724 * 0.02562 * 18 17 16 20 20 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 21 21 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 22 22 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 23 23 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 24 24 H 1.00905 * 111.00318 * 213.95098 * 12 2 1 25 25 H 0.97006 * 119.99566 * 359.97438 * 13 12 2 26 26 H 1.08004 * 120.40519 * 180.25183 * 16 15 14 27 27 H 1.08005 * 120.72006 * 179.75202 * 17 16 15 28 28 H 1.08003 * 120.40225 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.8075 -1.1190 4.0077 10 1 1.8270 -0.4198 5.2204 11 1 1.8281 -2.5198 4.0082 12 7 2.0196 -0.6926 -1.1994 13 7 2.1829 0.1810 -2.2368 14 6 2.6380 -0.2759 -3.4613 15 7 2.9159 -1.5630 -3.6086 16 6 3.3475 -2.0332 -4.7672 17 6 3.5185 -1.1599 -5.8299 18 6 3.2237 0.1810 -5.6396 19 7 2.7911 0.5850 -4.4567 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 0.7082 1.1609 3.4844 24 1 2.8769 -1.1885 -1.0060 25 1 1.9791 1.1216 -2.1153 26 1 3.5685 -3.0841 -4.8825 27 1 3.8733 -1.5167 -6.7856 28 1 3.3457 0.8874 -6.4475 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306824748.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:11 Heat of formation + Delta-G solvation = 84.996286 kcal Electronic energy + Delta-G solvation = -13048.576546 eV Core-core repulsion = 10715.031949 eV Total energy + Delta-G solvation = -2333.544596 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.47523 -37.13111 -33.83426 -33.26018 -31.68877 -29.62545 -26.75938 -25.22098 -24.14461 -22.63690 -20.49387 -18.23477 -17.22274 -16.30570 -15.41142 -15.23543 -15.01692 -14.49299 -14.13862 -13.62679 -13.12109 -12.69845 -11.51379 -11.48344 -10.97805 -10.86262 -10.63440 -10.51322 -10.48685 -10.24249 -10.22491 -9.10615 -8.86667 -8.71799 -8.45413 -6.75893 -6.17525 -4.26485 1.51928 1.55199 3.17878 3.25301 3.29623 3.34193 4.27671 4.31259 4.52058 4.86401 5.09370 5.15605 5.43838 5.53576 5.83941 6.13161 6.55994 6.72161 6.93690 6.98345 7.17656 7.44432 7.51513 7.68079 7.87784 8.09187 8.21725 8.45047 8.80121 9.15950 9.40386 10.88475 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.063687 B = 0.006727 C = 0.006356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.546085 B = 4161.179333 C = 4404.525379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.196 3.804 3 H 0.016 0.984 4 C -0.527 4.527 5 H 0.065 0.935 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.904 3.096 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.434 5.434 13 N -0.529 5.529 14 C 0.568 3.432 15 N -0.554 5.554 16 C 0.192 3.808 17 C -0.319 4.319 18 C 0.192 3.808 19 N -0.584 5.584 20 H 0.008 0.992 21 H 0.086 0.914 22 H 0.036 0.964 23 H 0.265 0.735 24 H 0.336 0.664 25 H 0.408 0.592 26 H 0.160 0.840 27 H 0.135 0.865 28 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.080 -2.036 -12.163 12.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.089 3.911 3 H 0.033 0.967 4 C -0.566 4.566 5 H 0.083 0.917 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.732 3.268 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.160 5.160 13 N -0.252 5.252 14 C 0.211 3.789 15 N -0.278 5.278 16 C 0.022 3.978 17 C -0.347 4.347 18 C 0.023 3.977 19 N -0.309 5.309 20 H 0.027 0.973 21 H 0.104 0.896 22 H 0.055 0.945 23 H 0.075 0.925 24 H 0.156 0.844 25 H 0.250 0.750 26 H 0.177 0.823 27 H 0.153 0.847 28 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 2.971 -1.835 -11.051 11.590 hybrid contribution 1.304 0.063 0.397 1.365 sum 4.276 -1.771 -10.654 11.616 Atomic orbital electron populations 1.21721 0.96611 1.00033 0.99839 1.19670 0.93678 0.93159 0.84625 0.96699 1.21097 1.32516 1.13128 0.89899 0.91713 1.24901 0.94713 0.94901 0.99174 1.69873 1.35914 1.22601 1.24057 0.86454 0.79112 0.79786 0.81481 1.20183 1.21157 1.19940 1.62573 1.32732 1.18184 1.02515 1.43798 1.67415 1.09222 1.04780 1.19100 0.88337 0.85306 0.86202 1.68016 1.19573 1.14055 1.26110 1.22905 0.87947 0.99969 0.86948 1.22334 1.13848 0.96234 1.02242 1.22735 0.88108 0.94178 0.92661 1.67791 1.23040 1.38666 1.01354 0.97267 0.89567 0.94450 0.92525 0.84411 0.74986 0.82269 0.84698 0.82310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.04 9.30 37.16 0.35 -2.69 15 2 C 0.20 4.89 2.72 -68.86 -0.19 4.70 15 3 H 0.02 0.41 7.66 -51.93 -0.40 0.01 15 4 C -0.53 -14.14 8.59 -34.44 -0.30 -14.44 15 5 H 0.06 1.71 7.54 -52.49 -0.40 1.31 15 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 15 7 N -0.89 -24.59 11.32 55.43 0.63 -23.97 15 8 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 15 9 H -0.28 -6.30 7.11 56.52 0.40 -5.90 15 10 H -0.29 -6.53 7.11 56.52 0.40 -6.13 15 11 H -0.27 -6.28 7.11 56.52 0.40 -5.87 15 12 N -0.43 -9.74 6.54 -5.65 -0.04 -9.78 15 13 N -0.53 -10.76 6.12 29.76 0.18 -10.57 15 14 C 0.57 10.82 8.50 -322.81 -2.74 8.08 15 15 N -0.55 -10.09 9.81 -13.93 -0.14 -10.22 15 16 C 0.19 2.65 11.30 -17.22 -0.19 2.45 15 17 C -0.32 -3.74 10.16 -39.31 -0.40 -4.14 15 18 C 0.19 2.50 11.30 -17.23 -0.19 2.31 15 19 N -0.58 -9.92 10.46 -13.93 -0.15 -10.06 15 20 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 15 21 H 0.09 2.27 6.07 -51.93 -0.32 1.96 15 22 H 0.04 0.91 8.14 -51.93 -0.42 0.49 15 23 H 0.26 7.00 8.31 -40.82 -0.34 6.67 15 24 H 0.34 7.61 8.11 -181.36 -1.47 6.13 15 25 H 0.41 7.99 8.18 -185.15 -1.51 6.48 15 26 H 0.16 1.62 8.06 -52.48 -0.42 1.20 15 27 H 0.14 1.11 8.06 -52.48 -0.42 0.68 15 28 H 0.16 1.44 8.06 -52.48 -0.42 1.02 15 LS Contribution 248.60 15.07 3.75 3.75 Total: -1.00 -29.39 248.60 -9.89 -39.29 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -5.34 Total: 7.82 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: -3.76 Total: -2.05 kcal Atomic # 7 Polarization: -65.10 SS G_CDS: 0.49 Total: -64.61 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -29.39 -9.89 -39.29 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306824748.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.281 kcal (2) G-P(sol) polarization free energy of solvation -29.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds