Wall clock time and date at job start Mon Mar 30 2020 02:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47347 * 59.99862 * 8 6 4 10 10 H 1.48503 * 109.46845 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47399 * 299.99813 * 8 6 4 12 12 N 1.46902 * 109.47094 * 239.99537 * 2 1 3 13 13 N 1.36602 * 110.99810 * 90.00382 * 12 2 1 14 14 C 1.38403 * 120.00368 * 180.02562 * 13 12 2 15 15 N 1.32495 * 119.21270 * 359.72814 * 14 13 12 16 16 C 1.32277 * 120.73630 * 179.71863 * 15 14 13 17 17 C 1.38606 * 119.19919 * 0.54389 * 16 15 14 18 18 C 1.38607 * 118.55752 * 359.72897 * 17 16 15 19 19 N 1.32274 * 119.19724 * 0.02562 * 18 17 16 20 20 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 21 21 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 22 22 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 23 23 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 24 24 H 1.00905 * 111.00318 * 213.95098 * 12 2 1 25 25 H 0.97006 * 119.99566 * 359.97438 * 13 12 2 26 26 H 1.08004 * 120.40519 * 180.25183 * 16 15 14 27 27 H 1.08005 * 120.72006 * 179.75202 * 17 16 15 28 28 H 1.08003 * 120.40225 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.8075 -1.1190 4.0077 10 1 1.8270 -0.4198 5.2204 11 1 1.8281 -2.5198 4.0082 12 7 2.0196 -0.6926 -1.1994 13 7 2.1829 0.1810 -2.2368 14 6 2.6380 -0.2759 -3.4613 15 7 2.9159 -1.5630 -3.6086 16 6 3.3475 -2.0332 -4.7672 17 6 3.5185 -1.1599 -5.8299 18 6 3.2237 0.1810 -5.6396 19 7 2.7911 0.5850 -4.4567 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 0.7082 1.1609 3.4844 24 1 2.8769 -1.1885 -1.0060 25 1 1.9791 1.1216 -2.1153 26 1 3.5685 -3.0841 -4.8825 27 1 3.8733 -1.5167 -6.7856 28 1 3.3457 0.8874 -6.4475 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306824748.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:11 Heat of formation + Delta-G solvation = 66.478357 kcal Electronic energy + Delta-G solvation = -13049.379543 eV Core-core repulsion = 10715.031949 eV Total energy + Delta-G solvation = -2334.347594 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.68986 -38.76385 -35.64825 -34.46116 -33.31624 -31.19758 -28.41801 -27.23942 -25.29175 -23.93254 -22.36687 -19.72567 -18.61237 -18.04961 -16.99899 -16.64348 -16.36066 -16.12637 -15.45664 -15.17015 -14.59067 -14.12465 -13.47438 -13.28758 -12.81690 -12.63234 -12.42254 -12.20026 -11.98354 -11.74464 -11.71593 -11.11672 -10.65669 -10.10996 -9.91959 -8.34897 -8.19334 -6.37811 0.38789 0.43900 1.42273 1.44538 1.51953 1.78026 2.39841 3.07750 3.08918 3.33522 3.71817 4.01640 4.23128 4.54453 4.62150 4.71000 4.96685 4.99035 5.08550 5.32090 5.49076 5.64197 5.72830 5.89160 6.08439 6.29390 6.59598 6.80440 7.00482 7.32567 7.69560 8.83982 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.063687 B = 0.006727 C = 0.006356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 439.546085 B = 4161.179333 C = 4404.525379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.202 3.798 3 H -0.008 1.008 4 C -0.547 4.547 5 H 0.063 0.937 6 C 0.020 3.980 7 N -0.913 5.913 8 Si 0.969 3.031 9 H -0.271 1.271 10 H -0.281 1.281 11 H -0.270 1.270 12 N -0.428 5.428 13 N -0.547 5.547 14 C 0.548 3.452 15 N -0.589 5.589 16 C 0.175 3.825 17 C -0.289 4.289 18 C 0.179 3.821 19 N -0.602 5.602 20 H 0.021 0.979 21 H 0.067 0.933 22 H 0.030 0.970 23 H 0.267 0.733 24 H 0.329 0.671 25 H 0.407 0.593 26 H 0.194 0.806 27 H 0.182 0.818 28 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.061 -2.974 -13.905 15.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.094 3.906 3 H 0.009 0.991 4 C -0.586 4.586 5 H 0.081 0.919 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.794 3.206 9 H -0.196 1.196 10 H -0.207 1.207 11 H -0.195 1.195 12 N -0.153 5.153 13 N -0.273 5.273 14 C 0.191 3.809 15 N -0.313 5.313 16 C 0.008 3.992 17 C -0.315 4.315 18 C 0.013 3.987 19 N -0.327 5.327 20 H 0.040 0.960 21 H 0.085 0.915 22 H 0.049 0.951 23 H 0.076 0.924 24 H 0.148 0.852 25 H 0.248 0.752 26 H 0.211 0.789 27 H 0.200 0.800 28 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 3.980 -2.806 -12.882 13.772 hybrid contribution 1.073 0.336 0.671 1.310 sum 5.053 -2.469 -12.211 13.444 Atomic orbital electron populations 1.21536 0.96538 0.99373 0.99451 1.19460 0.93682 0.91928 0.85512 0.99061 1.21402 1.32808 1.13353 0.91042 0.91865 1.25708 0.94787 0.95549 1.02002 1.69989 1.36674 1.23682 1.24741 0.85440 0.78669 0.78674 0.77836 1.19615 1.20658 1.19469 1.62454 1.32482 1.18407 1.01966 1.43584 1.69960 1.08781 1.04977 1.19191 0.89461 0.86134 0.86164 1.67986 1.20780 1.13923 1.28622 1.23638 0.87305 1.02023 0.86275 1.22851 1.10200 0.95179 1.03237 1.23592 0.86955 0.96005 0.92177 1.67811 1.23688 1.38893 1.02312 0.96015 0.91451 0.95052 0.92408 0.85209 0.75203 0.78931 0.80040 0.78175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.57 9.30 71.98 0.67 -4.90 15 2 C 0.20 10.42 2.72 44.17 0.12 10.54 15 3 H -0.01 -0.45 7.66 -2.39 -0.02 -0.46 15 4 C -0.55 -29.93 8.59 25.60 0.22 -29.71 15 5 H 0.06 3.39 7.54 -2.91 -0.02 3.37 15 6 C 0.02 1.09 5.30 84.66 0.45 1.54 15 7 N -0.91 -51.44 11.32 21.45 0.24 -51.20 15 8 Si 0.97 42.83 29.54 68.60 2.03 44.86 15 9 H -0.27 -11.67 7.11 99.48 0.71 -10.96 15 10 H -0.28 -12.12 7.11 99.48 0.71 -11.42 15 11 H -0.27 -11.66 7.11 99.48 0.71 -10.95 15 12 N -0.43 -19.79 6.54 -171.80 -1.12 -20.91 15 13 N -0.55 -22.86 6.12 -59.75 -0.37 -23.23 15 14 C 0.55 20.82 8.50 261.49 2.22 23.04 15 15 N -0.59 -21.00 9.81 -197.98 -1.94 -22.94 15 16 C 0.17 4.32 11.30 84.71 0.96 5.28 15 17 C -0.29 -5.53 10.16 22.45 0.23 -5.30 15 18 C 0.18 4.08 11.30 84.71 0.96 5.03 15 19 N -0.60 -19.75 10.46 -197.98 -2.07 -21.82 15 20 H 0.02 0.99 8.14 -2.39 -0.02 0.97 15 21 H 0.07 3.65 6.07 -2.39 -0.01 3.63 15 22 H 0.03 1.56 8.14 -2.38 -0.02 1.54 15 23 H 0.27 14.25 8.31 -92.71 -0.77 13.48 15 24 H 0.33 15.39 8.11 -210.55 -1.71 13.68 15 25 H 0.41 16.65 8.18 -215.49 -1.76 14.88 15 26 H 0.19 3.24 8.06 -2.91 -0.02 3.21 15 27 H 0.18 1.80 8.06 -2.91 -0.02 1.78 15 28 H 0.20 2.72 8.06 -2.91 -0.02 2.69 15 Total: -1.00 -64.58 248.60 0.31 -64.28 By element: Atomic # 1 Polarization: 27.73 SS G_CDS: -2.28 Total: 25.45 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: 5.82 Total: 5.52 kcal Atomic # 7 Polarization: -134.84 SS G_CDS: -5.26 Total: -140.10 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -64.58 0.31 -64.28 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306824748.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.756 kcal (2) G-P(sol) polarization free energy of solvation -64.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds