Wall clock time and date at job start Mon Mar 30 2020 02:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35957 * 117.00108 * 2 1 4 4 C 1.39420 * 119.82105 * 0.02562 * 3 2 1 5 5 C 1.38091 * 120.57461 * 179.97438 * 4 3 2 6 6 C 1.38718 * 120.19787 * 359.97438 * 5 4 3 7 7 N 1.38860 * 120.18084 * 180.27529 * 6 5 4 8 8 N 1.36599 * 119.99649 * 359.72342 * 7 6 5 9 9 C 1.41538 * 119.64204 * 0.02562 * 6 5 4 10 10 C 1.41023 * 120.28109 * 180.02562 * 9 6 5 11 11 H 1.07999 * 119.99909 * 334.25103 * 10 9 6 12 12 C 1.39901 * 120.00348 * 154.24895 * 10 9 6 13 13 N 1.30899 * 119.99779 * 342.95189 * 12 10 9 14 14 Si 1.86800 * 120.00246 * 162.94769 * 12 10 9 15 15 H 1.48503 * 109.46969 * 94.64234 * 14 12 10 16 16 H 1.48502 * 109.47339 * 214.64192 * 14 12 10 17 17 H 1.48493 * 109.47088 * 334.64111 * 14 12 10 18 18 C 1.37841 * 119.82455 * 179.97438 * 3 2 1 19 19 H 1.09002 * 109.47322 * 299.99730 * 1 2 3 20 20 H 1.09000 * 109.47362 * 60.00402 * 1 2 3 21 21 H 1.09006 * 109.46897 * 179.97438 * 1 2 3 22 22 H 1.08007 * 119.71118 * 359.97212 * 4 3 2 23 23 H 1.08004 * 119.90167 * 179.97438 * 5 4 3 24 24 H 0.97001 * 119.99976 * 179.72960 * 7 6 5 25 25 H 1.00903 * 110.99962 * 180.02562 * 8 7 6 26 26 H 1.00898 * 111.00277 * 303.95121 * 8 7 6 27 27 H 0.96999 * 119.99973 * 179.97438 * 13 12 10 28 28 H 1.07994 * 120.10628 * 0.04606 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2832 2.3783 0.0005 5 6 1.8939 3.6168 0.0011 6 6 3.2778 3.7124 0.0016 7 7 3.8916 4.9580 0.0079 8 7 3.1322 6.0935 0.0079 9 6 4.0609 2.5334 0.0011 10 6 5.4688 2.6148 0.0022 11 1 5.9595 3.4874 -0.4030 12 6 6.2299 1.5654 0.5281 13 7 5.6683 0.6765 1.3079 14 14 8.0473 1.4324 0.1174 15 1 8.8453 2.0857 1.1859 16 1 8.4293 0.0007 0.0197 17 1 8.3122 2.1050 -1.1797 18 6 3.4229 1.2793 0.0005 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 0.2051 2.3130 0.0005 23 1 1.2923 4.5138 0.0011 24 1 4.8595 5.0217 0.0123 25 1 3.7142 6.9177 0.0124 26 1 2.4973 6.1039 -0.7762 27 1 6.1959 -0.0514 1.6723 28 1 4.0100 0.3728 0.0002 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306902961.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:57 Heat of formation + Delta-G solvation = 10.290078 kcal Electronic energy + Delta-G solvation = -13416.554522 eV Core-core repulsion = 11047.477671 eV Total energy + Delta-G solvation = -2369.076852 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.65024 -37.11726 -34.83559 -33.25794 -29.85797 -29.14967 -26.96677 -25.32809 -24.77047 -21.00204 -20.05637 -17.62522 -17.01023 -15.94612 -15.91307 -14.84625 -14.65051 -14.39782 -14.07727 -13.07555 -12.50344 -12.18099 -11.96879 -11.45303 -11.32561 -11.10509 -10.97696 -10.87813 -10.49555 -10.02555 -9.62153 -9.32510 -9.04265 -7.74753 -7.35103 -6.69994 -5.83459 -4.16185 2.82514 3.10671 3.13637 3.21959 3.26722 3.97562 4.19466 4.50495 4.71958 5.68126 5.78960 5.85622 5.91454 6.02086 6.32814 6.48797 6.91118 7.02612 7.19463 7.30416 7.53110 7.66612 7.74046 8.01354 8.09782 8.35119 8.73444 8.85475 8.89663 9.13687 9.39800 10.28970 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.024234 B = 0.013276 C = 0.008806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.104501 B = 2108.524073 C = 3178.967733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.332 6.332 3 C 0.093 3.907 4 C -0.278 4.278 5 C -0.135 4.135 6 C 0.097 3.903 7 N -0.606 5.606 8 N -0.601 5.601 9 C 0.099 3.901 10 C -0.466 4.466 11 H 0.072 0.928 12 C 0.077 3.923 13 N -0.790 5.790 14 Si 0.904 3.096 15 H -0.272 1.272 16 H -0.276 1.276 17 H -0.263 1.263 18 C -0.171 4.171 19 H 0.043 0.957 20 H 0.042 0.958 21 H 0.080 0.920 22 H 0.093 0.907 23 H 0.097 0.903 24 H 0.398 0.602 25 H 0.337 0.663 26 H 0.313 0.687 27 H 0.279 0.721 28 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.719 2.901 -2.744 4.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.246 6.246 3 C 0.048 3.952 4 C -0.299 4.299 5 C -0.159 4.159 6 C -0.002 4.002 7 N -0.337 5.337 8 N -0.224 5.224 9 C 0.093 3.907 10 C -0.496 4.496 11 H 0.090 0.910 12 C -0.140 4.140 13 N -0.415 5.415 14 Si 0.729 3.271 15 H -0.198 1.198 16 H -0.201 1.201 17 H -0.187 1.187 18 C -0.192 4.192 19 H 0.061 0.939 20 H 0.060 0.940 21 H 0.098 0.902 22 H 0.111 0.889 23 H 0.115 0.885 24 H 0.236 0.764 25 H 0.149 0.851 26 H 0.127 0.873 27 H 0.090 0.910 28 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -2.984 2.347 -1.899 4.245 hybrid contribution 1.317 0.459 -0.990 1.711 sum -1.667 2.806 -2.889 4.359 Atomic orbital electron populations 1.22702 0.81227 1.01538 1.00304 1.85990 1.19076 1.29163 1.90398 1.18815 0.92398 0.82395 1.01548 1.20225 0.97013 0.92158 1.20454 1.19720 0.92284 0.95794 1.08134 1.17675 0.91243 0.83595 1.07640 1.42689 1.05037 0.98710 1.87255 1.60251 1.17920 0.96635 1.47548 1.16890 0.92721 0.88428 0.92613 1.19069 0.90787 1.03337 1.36435 0.90989 1.25792 1.00658 0.94801 0.92784 1.69869 1.38178 1.11552 1.21915 0.86375 0.82497 0.78444 0.79785 1.19789 1.20070 1.18694 1.20254 0.89266 0.98399 1.11309 0.93868 0.93986 0.90188 0.88855 0.88499 0.76415 0.85137 0.87250 0.90970 0.85594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.66 9.80 101.05 0.99 1.65 15 2 O -0.33 -7.67 10.49 -19.61 -0.21 -7.88 15 3 C 0.09 2.35 6.67 -39.29 -0.26 2.09 15 4 C -0.28 -6.55 9.03 -39.20 -0.35 -6.90 15 5 C -0.14 -3.19 9.33 -39.46 -0.37 -3.56 15 6 C 0.10 2.39 6.73 -83.24 -0.56 1.83 15 7 N -0.61 -12.68 6.56 32.74 0.21 -12.46 15 8 N -0.60 -10.18 9.58 60.35 0.58 -9.60 15 9 C 0.10 2.66 5.58 -106.65 -0.59 2.06 15 10 C -0.47 -12.11 8.48 -37.90 -0.32 -12.44 15 11 H 0.07 1.74 6.70 -52.49 -0.35 1.39 15 12 C 0.08 1.95 5.14 -17.33 -0.09 1.86 15 13 N -0.79 -20.93 10.99 55.55 0.61 -20.32 15 14 Si 0.90 18.69 29.59 -169.99 -5.03 13.66 15 15 H -0.27 -5.55 7.11 56.52 0.40 -5.15 15 16 H -0.28 -5.64 7.11 56.52 0.40 -5.24 15 17 H -0.26 -5.36 7.11 56.52 0.40 -4.96 15 18 C -0.17 -4.68 8.60 -38.80 -0.33 -5.02 15 19 H 0.04 0.71 7.65 -51.93 -0.40 0.31 15 20 H 0.04 0.67 7.65 -51.93 -0.40 0.27 15 21 H 0.08 1.11 8.14 -51.93 -0.42 0.69 15 22 H 0.09 1.94 6.26 -52.48 -0.33 1.61 15 23 H 0.10 2.07 7.02 -52.48 -0.37 1.70 15 24 H 0.40 8.03 7.05 -185.15 -1.31 6.73 15 25 H 0.34 4.49 9.21 -181.36 -1.67 2.82 15 26 H 0.31 4.94 8.43 -181.37 -1.53 3.41 15 27 H 0.28 6.77 8.30 -40.82 -0.34 6.43 15 28 H 0.13 3.62 6.22 -52.49 -0.33 3.29 15 LS Contribution 240.52 15.07 3.62 3.62 Total: -1.00 -29.75 240.52 -8.33 -38.08 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: -6.23 Total: 13.31 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: -1.89 Total: -18.42 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: 1.40 Total: -42.38 kcal Atomic # 8 Polarization: -7.67 SS G_CDS: -0.21 Total: -7.88 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.66 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -29.75 -8.33 -38.08 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306902961.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.371 kcal (2) G-P(sol) polarization free energy of solvation -29.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds