Wall clock time and date at job start Mon Mar 30 2020 02:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35957 * 117.00108 * 2 1 4 4 C 1.39420 * 119.82105 * 0.02562 * 3 2 1 5 5 C 1.38091 * 120.57461 * 179.97438 * 4 3 2 6 6 C 1.38718 * 120.19787 * 359.97438 * 5 4 3 7 7 N 1.38860 * 120.18084 * 180.27529 * 6 5 4 8 8 N 1.36599 * 119.99649 * 359.72342 * 7 6 5 9 9 C 1.41538 * 119.64204 * 0.02562 * 6 5 4 10 10 C 1.41023 * 120.28109 * 180.02562 * 9 6 5 11 11 H 1.07999 * 119.99909 * 334.25103 * 10 9 6 12 12 C 1.39901 * 120.00348 * 154.24895 * 10 9 6 13 13 N 1.30899 * 119.99779 * 342.95189 * 12 10 9 14 14 Si 1.86800 * 120.00246 * 162.94769 * 12 10 9 15 15 H 1.48503 * 109.46969 * 94.64234 * 14 12 10 16 16 H 1.48502 * 109.47339 * 214.64192 * 14 12 10 17 17 H 1.48493 * 109.47088 * 334.64111 * 14 12 10 18 18 C 1.37841 * 119.82455 * 179.97438 * 3 2 1 19 19 H 1.09002 * 109.47322 * 299.99730 * 1 2 3 20 20 H 1.09000 * 109.47362 * 60.00402 * 1 2 3 21 21 H 1.09006 * 109.46897 * 179.97438 * 1 2 3 22 22 H 1.08007 * 119.71118 * 359.97212 * 4 3 2 23 23 H 1.08004 * 119.90167 * 179.97438 * 5 4 3 24 24 H 0.97001 * 119.99976 * 179.72960 * 7 6 5 25 25 H 1.00903 * 110.99962 * 180.02562 * 8 7 6 26 26 H 1.00898 * 111.00277 * 303.95121 * 8 7 6 27 27 H 0.96999 * 119.99973 * 179.97438 * 13 12 10 28 28 H 1.07994 * 120.10628 * 0.04606 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2832 2.3783 0.0005 5 6 1.8939 3.6168 0.0011 6 6 3.2778 3.7124 0.0016 7 7 3.8916 4.9580 0.0079 8 7 3.1322 6.0935 0.0079 9 6 4.0609 2.5334 0.0011 10 6 5.4688 2.6148 0.0022 11 1 5.9595 3.4874 -0.4030 12 6 6.2299 1.5654 0.5281 13 7 5.6683 0.6765 1.3079 14 14 8.0473 1.4324 0.1174 15 1 8.8453 2.0857 1.1859 16 1 8.4293 0.0007 0.0197 17 1 8.3122 2.1050 -1.1797 18 6 3.4229 1.2793 0.0005 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 0.2051 2.3130 0.0005 23 1 1.2923 4.5138 0.0011 24 1 4.8595 5.0217 0.0123 25 1 3.7142 6.9177 0.0124 26 1 2.4973 6.1039 -0.7762 27 1 6.1959 -0.0514 1.6723 28 1 4.0100 0.3728 0.0002 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306902961.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:57 Heat of formation + Delta-G solvation = -10.394339 kcal Electronic energy + Delta-G solvation = -13417.451466 eV Core-core repulsion = 11047.477671 eV Total energy + Delta-G solvation = -2369.973795 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.43927 -38.81657 -36.53476 -35.10805 -31.70559 -30.89044 -28.55480 -27.01793 -26.56086 -22.88168 -21.85241 -19.46131 -18.66287 -17.76045 -17.55516 -16.57464 -16.24565 -16.05360 -15.68376 -14.80970 -14.28581 -13.97579 -13.71261 -13.22883 -13.01732 -12.74316 -12.61514 -12.45357 -12.20964 -11.82898 -11.31488 -11.13909 -10.88039 -9.42989 -9.25343 -8.57686 -7.61171 -6.08977 1.00471 1.32509 1.41103 1.52273 1.56806 2.24251 2.62997 2.82994 2.92709 3.77983 4.40183 4.47959 4.52284 4.60211 4.68920 4.79665 5.08994 5.18247 5.35933 5.61595 5.65536 5.91464 6.05340 6.11846 6.23779 6.44274 6.89590 6.98703 7.05358 7.34114 7.82000 8.43827 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.024234 B = 0.013276 C = 0.008806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.104501 B = 2108.524073 C = 3178.967733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.355 6.355 3 C 0.081 3.919 4 C -0.274 4.274 5 C -0.143 4.143 6 C 0.091 3.909 7 N -0.605 5.605 8 N -0.602 5.602 9 C 0.068 3.932 10 C -0.490 4.490 11 H 0.082 0.918 12 C 0.032 3.968 13 N -0.829 5.829 14 Si 0.981 3.019 15 H -0.264 1.264 16 H -0.274 1.274 17 H -0.257 1.257 18 C -0.203 4.203 19 H 0.050 0.950 20 H 0.055 0.945 21 H 0.113 0.887 22 H 0.123 0.877 23 H 0.122 0.878 24 H 0.399 0.601 25 H 0.360 0.640 26 H 0.326 0.674 27 H 0.284 0.716 28 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.090 3.997 -3.107 5.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.271 6.271 3 C 0.036 3.964 4 C -0.294 4.294 5 C -0.167 4.167 6 C -0.009 4.009 7 N -0.334 5.334 8 N -0.228 5.228 9 C 0.063 3.937 10 C -0.520 4.520 11 H 0.100 0.900 12 C -0.182 4.182 13 N -0.456 5.456 14 Si 0.802 3.198 15 H -0.188 1.188 16 H -0.198 1.198 17 H -0.180 1.180 18 C -0.225 4.225 19 H 0.069 0.931 20 H 0.074 0.926 21 H 0.132 0.868 22 H 0.141 0.859 23 H 0.139 0.861 24 H 0.237 0.763 25 H 0.174 0.826 26 H 0.141 0.859 27 H 0.094 0.906 28 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.361 3.481 -2.265 5.343 hybrid contribution 1.271 0.161 -0.869 1.548 sum -2.090 3.642 -3.134 5.240 Atomic orbital electron populations 1.23080 0.78065 1.04228 1.01240 1.85947 1.22382 1.28452 1.90284 1.18909 0.92131 0.83819 1.01545 1.20557 0.98470 0.91513 1.18868 1.20037 0.92162 0.96774 1.07750 1.17814 0.91795 0.84425 1.06904 1.42606 1.05343 0.98917 1.86502 1.60085 1.18212 0.96078 1.48412 1.17227 0.93672 0.89223 0.93591 1.19386 0.91074 1.04418 1.37170 0.89977 1.26713 1.05402 0.94037 0.92056 1.69968 1.40173 1.12353 1.23063 0.85215 0.76413 0.78405 0.79746 1.18835 1.19850 1.18025 1.20223 0.90470 0.97938 1.13883 0.93119 0.92631 0.86841 0.85882 0.86057 0.76274 0.82586 0.85917 0.90598 0.88284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.92 9.80 113.37 1.11 2.03 15 2 O -0.36 -16.43 10.49 -93.07 -0.98 -17.40 15 3 C 0.08 4.13 6.67 22.46 0.15 4.28 15 4 C -0.27 -12.53 9.03 22.52 0.20 -12.32 15 5 C -0.14 -6.52 9.33 22.35 0.21 -6.31 15 6 C 0.09 4.43 6.73 38.96 0.26 4.70 15 7 N -0.60 -24.47 6.56 -50.34 -0.33 -24.80 15 8 N -0.60 -18.87 9.58 37.02 0.35 -18.51 15 9 C 0.07 3.75 5.58 -21.18 -0.12 3.63 15 10 C -0.49 -25.94 8.48 23.36 0.20 -25.74 15 11 H 0.08 4.00 6.70 -2.91 -0.02 3.98 15 12 C 0.03 1.64 5.14 85.23 0.44 2.08 15 13 N -0.83 -45.43 10.99 21.82 0.24 -45.19 15 14 Si 0.98 38.66 29.59 68.60 2.03 40.69 15 15 H -0.26 -9.93 7.11 99.48 0.71 -9.22 15 16 H -0.27 -10.57 7.11 99.48 0.71 -9.86 15 17 H -0.26 -9.74 7.11 99.48 0.71 -9.03 15 18 C -0.20 -11.55 8.60 22.78 0.20 -11.36 15 19 H 0.05 1.55 7.65 -2.39 -0.02 1.53 15 20 H 0.06 1.63 7.65 -2.39 -0.02 1.61 15 21 H 0.11 2.84 8.14 -2.38 -0.02 2.83 15 22 H 0.12 4.77 6.26 -2.91 -0.02 4.76 15 23 H 0.12 4.83 7.02 -2.91 -0.02 4.81 15 24 H 0.40 15.72 7.05 -215.50 -1.52 14.20 15 25 H 0.36 8.56 9.21 -210.55 -1.94 6.63 15 26 H 0.33 9.33 8.43 -210.56 -1.77 7.56 15 27 H 0.28 14.20 8.30 -92.71 -0.77 13.43 15 28 H 0.10 6.03 6.22 -2.91 -0.02 6.01 15 Total: -1.00 -64.95 240.52 -0.04 -65.00 By element: Atomic # 1 Polarization: 43.23 SS G_CDS: -4.01 Total: 39.22 kcal Atomic # 6 Polarization: -41.65 SS G_CDS: 2.65 Total: -39.00 kcal Atomic # 7 Polarization: -88.77 SS G_CDS: 0.26 Total: -88.50 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -0.98 Total: -17.40 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 2.03 Total: 40.69 kcal Total: -64.95 -0.04 -65.00 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306902961.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.603 kcal (2) G-P(sol) polarization free energy of solvation -64.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds