Wall clock time and date at job start Mon Mar 30 2020 02:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 O 1.21623 * 119.99846 * 138.03147 * 3 2 1 5 5 N 1.34773 * 120.00333 * 318.02196 * 3 2 1 6 6 C 1.46965 * 120.59633 * 180.02562 * 5 3 2 7 7 C 1.53374 * 108.63702 * 235.20981 * 6 5 3 8 8 N 1.46968 * 108.63080 * 310.57409 * 7 6 5 9 9 C 1.36934 * 120.58904 * 235.19759 * 8 7 6 10 10 H 1.08009 * 119.99376 * 151.84519 * 9 8 7 11 11 C 1.38804 * 120.00824 * 331.57781 * 9 8 7 12 12 N 1.31627 * 119.99593 * 342.82852 * 11 9 8 13 13 Si 1.86794 * 120.00637 * 162.82757 * 11 9 8 14 14 H 1.48504 * 109.47167 * 59.99793 * 13 11 9 15 15 H 1.48497 * 109.47420 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47203 * 300.00107 * 13 11 9 17 17 C 1.46960 * 118.80978 * 55.48071 * 8 7 6 18 18 C 1.46963 * 120.59567 * 359.97438 * 5 3 2 19 19 H 4.39229 * 13.43060 * 359.97438 * 4 2 1 20 20 H 1.08996 * 109.61476 * 115.46200 * 6 5 3 21 21 H 1.09010 * 109.75120 * 355.03295 * 6 5 3 22 22 H 1.09003 * 109.60871 * 190.82753 * 7 6 5 23 23 H 1.08999 * 109.74926 * 70.40483 * 7 6 5 24 24 H 0.97003 * 120.00012 * 180.02562 * 12 11 9 25 25 H 1.08998 * 109.61464 * 64.26783 * 17 8 7 26 26 H 1.09004 * 109.60410 * 184.77119 * 17 8 7 27 27 H 1.08997 * 109.60925 * 244.53605 * 18 5 3 28 28 H 1.09004 * 109.60691 * 4.87283 * 18 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 8 3.2137 0.7841 -0.7044 5 7 3.2803 -0.8667 0.7806 6 6 4.7499 -0.8770 0.7912 7 6 5.2325 -2.2950 0.4618 8 7 4.5114 -3.2472 1.3180 9 6 5.1966 -4.1286 2.1110 10 1 4.7526 -4.4879 3.0277 11 6 6.4593 -4.5646 1.7341 12 7 6.8622 -4.4169 0.4897 13 14 7.5869 -5.3608 2.9926 14 1 6.9359 -6.5779 3.5405 15 1 8.8682 -5.7356 2.3422 16 1 7.8527 -4.4026 4.0954 17 6 3.0419 -3.2407 1.3032 18 6 2.5593 -1.8185 1.6374 19 1 -1.0500 -0.0010 0.0002 20 1 5.1107 -0.5879 1.7783 21 1 5.1286 -0.1790 0.0444 22 1 6.3032 -2.3704 0.6517 23 1 5.0302 -2.5189 -0.5856 24 1 7.7445 -4.7219 0.2262 25 1 2.6847 -3.5286 0.3144 26 1 2.6655 -3.9410 2.0489 27 1 2.7645 -1.5962 2.6845 28 1 1.4883 -1.7405 1.4500 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306963241.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:07:00 Heat of formation + Delta-G solvation = 56.510160 kcal Electronic energy + Delta-G solvation = -13540.796795 eV Core-core repulsion = 11173.724196 eV Total energy + Delta-G solvation = -2367.072599 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.58652 -36.82098 -34.01854 -33.02286 -31.21526 -30.26169 -27.15282 -24.36780 -23.18168 -22.19203 -19.84511 -18.13448 -16.86298 -16.07001 -15.60648 -14.94948 -14.77509 -13.73135 -13.55651 -13.45808 -13.30666 -12.55934 -11.84461 -11.33628 -10.93715 -10.84611 -10.74722 -10.71865 -10.61518 -10.27747 -10.04373 -9.92277 -9.73076 -8.62467 -8.33168 -6.75060 -5.87293 -3.33001 1.82153 2.50986 3.33956 3.36243 3.40621 3.41687 3.82764 4.36899 4.45173 5.22645 5.30198 5.56191 5.70023 5.72726 5.88587 6.09761 6.28262 6.33931 6.44983 6.65599 6.80842 7.19586 7.28784 7.50622 7.69645 7.76402 8.33548 8.39853 9.09172 9.71738 10.28595 11.20339 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.062667 B = 0.008433 C = 0.007845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.701743 B = 3319.587594 C = 3568.105259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.206 4.206 3 C 0.614 3.386 4 O -0.541 6.541 5 N -0.583 5.583 6 C 0.087 3.913 7 C 0.157 3.843 8 N -0.591 5.591 9 C -0.260 4.260 10 H 0.068 0.932 11 C 0.005 3.995 12 N -0.901 5.901 13 Si 0.906 3.094 14 H -0.282 1.282 15 H -0.290 1.290 16 H -0.283 1.283 17 C 0.131 3.869 18 C 0.089 3.911 19 H 0.230 0.770 20 H 0.065 0.935 21 H 0.084 0.916 22 H 0.102 0.898 23 H 0.025 0.975 24 H 0.257 0.743 25 H 0.025 0.975 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.368 4.914 2.242 10.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.209 4.209 3 C 0.402 3.598 4 O -0.421 6.421 5 N -0.313 5.313 6 C -0.035 4.035 7 C 0.031 3.969 8 N -0.314 5.314 9 C -0.389 4.389 10 H 0.086 0.914 11 C -0.194 4.194 12 N -0.544 5.544 13 Si 0.735 3.265 14 H -0.208 1.208 15 H -0.216 1.216 16 H -0.209 1.209 17 C 0.004 3.996 18 C -0.036 4.036 19 H 0.247 0.753 20 H 0.084 0.916 21 H 0.102 0.898 22 H 0.120 0.880 23 H 0.044 0.956 24 H 0.067 0.933 25 H 0.043 0.957 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -8.812 5.222 1.818 10.403 hybrid contribution 0.343 -0.514 0.593 0.857 sum -8.469 4.708 2.412 9.985 Atomic orbital electron populations 1.25138 0.95763 0.96772 0.96312 1.21738 0.93664 1.02594 1.02915 1.15000 0.82818 0.81311 0.80695 1.90806 1.68766 1.40340 1.42201 1.47972 1.08222 1.33854 1.41289 1.22620 0.76985 1.02014 1.01922 1.21225 0.99015 0.83619 0.93062 1.44023 0.98966 1.38487 1.49920 1.19152 0.99263 1.20472 1.00062 0.91443 1.25095 0.99905 0.98788 0.95627 1.70012 1.19758 1.49811 1.14866 0.86323 0.80110 0.79224 0.80806 1.20823 1.21567 1.20890 1.21378 0.86850 0.92390 0.98998 1.22529 0.95293 0.91628 0.94155 0.75303 0.91646 0.89765 0.87975 0.95648 0.93322 0.95740 0.91281 0.91231 0.90844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.36 19.19 29.55 0.57 -0.79 15 2 C -0.21 -3.21 11.57 -38.84 -0.45 -3.66 15 3 C 0.61 11.77 7.55 -14.34 -0.11 11.66 15 4 O -0.54 -11.96 16.49 5.26 0.09 -11.88 15 5 N -0.58 -11.07 2.95 -175.05 -0.52 -11.59 15 6 C 0.09 1.77 6.59 -3.60 -0.02 1.75 15 7 C 0.16 3.74 5.51 -3.59 -0.02 3.72 15 8 N -0.59 -14.40 2.96 -171.73 -0.51 -14.91 15 9 C -0.26 -6.87 9.57 -15.06 -0.14 -7.02 15 10 H 0.07 1.73 7.89 -52.48 -0.41 1.31 15 11 C 0.01 0.14 4.91 -17.43 -0.09 0.05 15 12 N -0.90 -25.58 11.20 55.49 0.62 -24.96 15 13 Si 0.91 21.05 29.59 -169.99 -5.03 16.02 15 14 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 15 H -0.29 -6.82 7.11 56.52 0.40 -6.42 15 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 15 17 C 0.13 2.62 6.70 -3.34 -0.02 2.60 15 18 C 0.09 1.50 6.51 -3.34 -0.02 1.47 15 19 H 0.23 1.37 7.80 -54.09 -0.42 0.95 15 20 H 0.07 1.28 8.14 -51.93 -0.42 0.85 15 21 H 0.08 1.69 7.00 -51.92 -0.36 1.33 15 22 H 0.10 2.65 6.00 -51.93 -0.31 2.34 15 23 H 0.03 0.65 8.14 -51.93 -0.42 0.23 15 24 H 0.26 7.07 8.31 -40.82 -0.34 6.73 15 25 H 0.02 0.51 8.14 -51.93 -0.42 0.09 15 26 H 0.07 1.29 7.93 -51.93 -0.41 0.87 15 27 H 0.07 1.14 8.14 -51.93 -0.42 0.71 15 28 H 0.07 1.04 6.30 -51.93 -0.33 0.72 15 LS Contribution 246.40 15.07 3.71 3.71 Total: -1.00 -31.25 246.40 -5.02 -36.27 By element: Atomic # 1 Polarization: 0.62 SS G_CDS: -3.08 Total: -2.46 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: -0.31 Total: 9.78 kcal Atomic # 7 Polarization: -51.05 SS G_CDS: -0.40 Total: -51.45 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.09 Total: -11.88 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -31.25 -5.02 -36.27 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306963241.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.779 kcal (2) G-P(sol) polarization free energy of solvation -31.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds