Wall clock time and date at job start Mon Mar 30 2020 02:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30519 * 1 3 3 Si 1.86799 * 120.00010 * 2 1 4 4 H 1.48501 * 109.47441 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47233 * 300.00201 * 3 2 1 6 6 H 1.48495 * 109.47454 * 60.00062 * 3 2 1 7 7 C 1.40467 * 120.00103 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99851 * 179.97438 * 7 2 1 9 9 C 1.41021 * 119.99861 * 0.02562 * 7 2 1 10 10 O 1.21437 * 120.00183 * 359.97438 * 9 7 2 11 11 C 1.50702 * 120.00165 * 180.02562 * 9 7 2 12 12 H 1.09005 * 109.46845 * 32.99092 * 11 9 7 13 13 C 1.52992 * 109.47579 * 152.99181 * 11 9 7 14 14 C 1.52995 * 109.47601 * 119.99766 * 13 11 9 15 15 C 1.53001 * 109.46923 * 60.00092 * 14 13 11 16 16 C 1.53002 * 109.47276 * 300.00300 * 15 14 13 17 17 C 1.53002 * 109.46954 * 359.97438 * 16 15 14 18 18 C 1.52998 * 109.47483 * 300.00100 * 17 16 15 19 19 C 1.53001 * 109.47176 * 300.00608 * 14 13 11 20 20 H 0.96997 * 119.99993 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.47243 * 359.97438 * 13 11 9 22 22 H 1.09006 * 109.47378 * 240.00246 * 13 11 9 23 23 H 1.08992 * 109.47463 * 180.02562 * 14 13 11 24 24 H 1.09000 * 109.47308 * 180.02562 * 15 14 13 25 25 H 1.08994 * 109.47152 * 60.00160 * 15 14 13 26 26 H 1.08995 * 109.47220 * 240.00289 * 16 15 14 27 27 H 1.08997 * 109.47389 * 119.99935 * 16 15 14 28 28 H 1.09002 * 109.47065 * 180.02562 * 17 16 15 29 29 H 1.08998 * 109.47385 * 179.97438 * 18 17 16 30 30 H 1.09000 * 109.46915 * 300.00115 * 18 17 16 31 31 H 1.09000 * 109.47182 * 179.97438 * 19 14 13 32 32 H 1.09004 * 109.46503 * 299.99329 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2392 1.6177 0.0000 4 1 3.6992 1.3464 -0.0006 5 1 1.8804 2.3965 -1.2125 6 1 1.8805 2.3965 1.2124 7 6 2.0075 -1.2165 -0.0005 8 1 3.0875 -1.2164 -0.0010 9 6 1.3024 -2.4377 -0.0016 10 8 0.0881 -2.4378 -0.0016 11 6 2.0559 -3.7429 -0.0016 12 1 2.9836 -3.6268 0.5587 13 6 1.1975 -4.8274 0.6522 14 6 0.9464 -5.9538 -0.3522 15 6 2.2837 -6.5558 -0.7882 16 6 3.1422 -5.4713 -1.4422 17 6 2.3770 -4.1464 -1.4427 18 6 1.0750 -4.3096 -2.2295 19 6 0.2166 -5.3937 -1.5747 20 1 -0.4850 0.8400 0.0004 21 1 0.2449 -4.3985 0.9633 22 1 1.7175 -5.2265 1.5232 23 1 0.3345 -6.7262 0.1135 24 1 2.1049 -7.3580 -1.5042 25 1 2.8037 -6.9548 0.0826 26 1 3.3711 -5.7586 -2.4684 27 1 4.0700 -5.3552 -0.8819 28 1 2.9884 -3.3738 -1.9089 29 1 0.5297 -3.3659 -2.2295 30 1 1.3043 -4.5972 -3.2556 31 1 0.0381 -6.1961 -2.2906 32 1 -0.7362 -4.9649 -1.2641 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306965839.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:03 Heat of formation + Delta-G solvation = -73.631216 kcal Electronic energy + Delta-G solvation = -14380.440774 eV Core-core repulsion = 12111.265165 eV Total energy + Delta-G solvation = -2269.175609 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.120 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.86982 -36.11273 -32.57873 -30.83647 -30.20046 -30.03532 -26.74613 -22.59975 -21.94595 -21.26015 -19.23187 -16.43710 -15.78334 -15.69072 -15.26513 -15.09516 -14.24741 -13.12487 -12.53108 -12.11394 -11.93309 -11.50351 -11.45505 -11.42215 -11.32397 -11.28194 -11.18679 -10.85531 -10.49060 -10.33844 -10.19145 -9.79716 -9.21244 -9.10319 -9.05902 -8.82010 -7.23567 -6.13725 -4.80917 3.06356 3.16889 3.21479 4.07917 4.30704 5.13782 5.25396 5.27543 5.58427 5.83017 5.89674 5.98680 6.00978 6.02482 6.14685 6.15728 6.28143 6.33871 6.34641 6.47616 6.59665 6.74722 6.83576 7.00096 7.04409 7.14832 7.21521 7.25778 7.33304 7.34218 8.18223 8.91407 9.01992 10.43227 10.69322 Molecular weight = 208.12amu Principal moments of inertia in cm(-1) A = 0.053331 B = 0.010038 C = 0.009509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.895135 B = 2788.603000 C = 2943.985341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.742 5.742 2 C 0.084 3.916 3 Si 0.899 3.101 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.536 4.536 8 H 0.066 0.934 9 C 0.374 3.626 10 O -0.539 6.539 11 C -0.122 4.122 12 H 0.060 0.940 13 C -0.104 4.104 14 C -0.082 4.082 15 C -0.110 4.110 16 C -0.112 4.112 17 C -0.065 4.065 18 C -0.110 4.110 19 C -0.104 4.104 20 H 0.270 0.730 21 H 0.077 0.923 22 H 0.042 0.958 23 H 0.057 0.943 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.044 0.956 31 H 0.045 0.955 32 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.333 -7.318 -2.187 8.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.371 5.371 2 C -0.138 4.138 3 Si 0.724 3.276 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.568 4.568 8 H 0.084 0.916 9 C 0.268 3.732 10 O -0.427 6.427 11 C -0.142 4.142 12 H 0.079 0.921 13 C -0.141 4.141 14 C -0.101 4.101 15 C -0.147 4.147 16 C -0.149 4.149 17 C -0.084 4.084 18 C -0.148 4.148 19 C -0.141 4.141 20 H 0.081 0.919 21 H 0.096 0.904 22 H 0.061 0.939 23 H 0.075 0.925 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.576 -7.276 -2.187 8.397 hybrid contribution 0.736 0.828 0.020 1.108 sum 4.312 -6.448 -2.167 8.054 Atomic orbital electron populations 1.69961 1.07392 1.27548 1.32224 1.25999 0.94531 1.00749 0.92570 0.86443 0.80957 0.81842 0.78384 1.18527 1.20007 1.20005 1.20873 0.94779 0.92106 1.49047 0.91573 1.19385 0.88880 0.87402 0.77556 1.90360 1.15563 1.88386 1.48397 1.21650 0.99326 0.98334 0.94860 0.92130 1.21499 1.01483 0.94932 0.96197 1.20979 0.95481 0.97108 0.96492 1.21524 0.96389 0.97328 0.99488 1.21562 0.98048 0.95743 0.99582 1.20790 0.96011 0.95586 0.95981 1.21474 0.96343 1.00099 0.96862 1.21411 0.99256 0.97283 0.96164 0.91888 0.90414 0.93896 0.92495 0.92988 0.92784 0.92888 0.92618 0.91485 0.90607 0.93719 0.93672 0.91706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.57 11.72 55.57 0.65 -20.92 16 2 C 0.08 2.30 5.50 -17.27 -0.10 2.20 16 3 Si 0.90 19.76 29.56 -169.99 -5.03 14.73 16 4 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.54 -14.97 9.21 -37.69 -0.35 -15.32 16 8 H 0.07 1.74 7.85 -52.49 -0.41 1.32 16 9 C 0.37 10.30 5.03 -33.25 -0.17 10.13 16 10 O -0.54 -16.52 13.30 5.42 0.07 -16.44 16 11 C -0.12 -2.73 2.45 -91.75 -0.22 -2.95 16 12 H 0.06 1.31 8.11 -51.93 -0.42 0.89 16 13 C -0.10 -2.13 5.25 -26.74 -0.14 -2.27 16 14 C -0.08 -1.44 3.20 -90.62 -0.29 -1.73 16 15 C -0.11 -1.67 5.71 -26.73 -0.15 -1.83 16 16 C -0.11 -1.79 5.71 -26.73 -0.15 -1.95 16 17 C -0.07 -1.28 2.71 -90.59 -0.25 -1.53 16 18 C -0.11 -2.19 5.38 -26.73 -0.14 -2.34 16 19 C -0.10 -1.91 5.71 -26.73 -0.15 -2.06 16 20 H 0.27 7.08 8.29 -40.82 -0.34 6.74 16 21 H 0.08 1.83 6.63 -51.93 -0.34 1.48 16 22 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 23 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 29 H 0.08 1.80 6.76 -51.93 -0.35 1.44 16 30 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 250.82 15.07 3.78 3.78 Total: -1.00 -30.54 250.82 -7.52 -38.06 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -4.89 Total: 0.42 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: -2.11 Total: -19.63 kcal Atomic # 7 Polarization: -21.57 SS G_CDS: 0.65 Total: -20.92 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: 0.07 Total: -16.44 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.03 Total: 14.73 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -30.54 -7.52 -38.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306965839.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.568 kcal (2) G-P(sol) polarization free energy of solvation -30.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds