Wall clock time and date at job start Mon Mar 30 2020 02:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30519 * 1 3 3 Si 1.86799 * 120.00010 * 2 1 4 4 H 1.48501 * 109.47441 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47233 * 300.00201 * 3 2 1 6 6 H 1.48495 * 109.47454 * 60.00062 * 3 2 1 7 7 C 1.40467 * 120.00103 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99851 * 179.97438 * 7 2 1 9 9 C 1.41021 * 119.99861 * 0.02562 * 7 2 1 10 10 O 1.21437 * 120.00183 * 359.97438 * 9 7 2 11 11 C 1.50702 * 120.00165 * 180.02562 * 9 7 2 12 12 H 1.09005 * 109.46845 * 32.99092 * 11 9 7 13 13 C 1.52992 * 109.47579 * 152.99181 * 11 9 7 14 14 C 1.52995 * 109.47601 * 119.99766 * 13 11 9 15 15 C 1.53001 * 109.46923 * 60.00092 * 14 13 11 16 16 C 1.53002 * 109.47276 * 300.00300 * 15 14 13 17 17 C 1.53002 * 109.46954 * 359.97438 * 16 15 14 18 18 C 1.52998 * 109.47483 * 300.00100 * 17 16 15 19 19 C 1.53001 * 109.47176 * 300.00608 * 14 13 11 20 20 H 0.96997 * 119.99993 * 359.97438 * 1 2 3 21 21 H 1.09004 * 109.47243 * 359.97438 * 13 11 9 22 22 H 1.09006 * 109.47378 * 240.00246 * 13 11 9 23 23 H 1.08992 * 109.47463 * 180.02562 * 14 13 11 24 24 H 1.09000 * 109.47308 * 180.02562 * 15 14 13 25 25 H 1.08994 * 109.47152 * 60.00160 * 15 14 13 26 26 H 1.08995 * 109.47220 * 240.00289 * 16 15 14 27 27 H 1.08997 * 109.47389 * 119.99935 * 16 15 14 28 28 H 1.09002 * 109.47065 * 180.02562 * 17 16 15 29 29 H 1.08998 * 109.47385 * 179.97438 * 18 17 16 30 30 H 1.09000 * 109.46915 * 300.00115 * 18 17 16 31 31 H 1.09000 * 109.47182 * 179.97438 * 19 14 13 32 32 H 1.09004 * 109.46503 * 299.99329 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2392 1.6177 0.0000 4 1 3.6992 1.3464 -0.0006 5 1 1.8804 2.3965 -1.2125 6 1 1.8805 2.3965 1.2124 7 6 2.0075 -1.2165 -0.0005 8 1 3.0875 -1.2164 -0.0010 9 6 1.3024 -2.4377 -0.0016 10 8 0.0881 -2.4378 -0.0016 11 6 2.0559 -3.7429 -0.0016 12 1 2.9836 -3.6268 0.5587 13 6 1.1975 -4.8274 0.6522 14 6 0.9464 -5.9538 -0.3522 15 6 2.2837 -6.5558 -0.7882 16 6 3.1422 -5.4713 -1.4422 17 6 2.3770 -4.1464 -1.4427 18 6 1.0750 -4.3096 -2.2295 19 6 0.2166 -5.3937 -1.5747 20 1 -0.4850 0.8400 0.0004 21 1 0.2449 -4.3985 0.9633 22 1 1.7175 -5.2265 1.5232 23 1 0.3345 -6.7262 0.1135 24 1 2.1049 -7.3580 -1.5042 25 1 2.8037 -6.9548 0.0826 26 1 3.3711 -5.7586 -2.4684 27 1 4.0700 -5.3552 -0.8819 28 1 2.9884 -3.3738 -1.9089 29 1 0.5297 -3.3659 -2.2295 30 1 1.3043 -4.5972 -3.2556 31 1 0.0381 -6.1961 -2.2906 32 1 -0.7362 -4.9649 -1.2641 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306965839.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:03 Heat of formation + Delta-G solvation = -91.673876 kcal Electronic energy + Delta-G solvation = -14381.223162 eV Core-core repulsion = 12111.265165 eV Total energy + Delta-G solvation = -2269.957997 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 208.120 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.45304 -38.15900 -34.71816 -32.39301 -31.77228 -31.54515 -28.83834 -24.37593 -23.34964 -22.75875 -21.13893 -18.47309 -17.45124 -17.27164 -17.04520 -16.58491 -15.95494 -14.96316 -14.34899 -13.99647 -13.61152 -13.18374 -12.91829 -12.86117 -12.84362 -12.82139 -12.76846 -12.51392 -12.37048 -12.23873 -11.98686 -11.34976 -10.98037 -10.74735 -10.61647 -10.53635 -9.37418 -8.22365 -7.03819 1.31359 1.34762 1.52057 2.20570 2.24529 3.39961 3.77654 3.82562 3.92672 4.41753 4.49859 4.52851 4.56333 4.57893 4.64503 4.65801 4.69823 4.78173 4.85417 5.14219 5.16306 5.19772 5.22695 5.35145 5.46330 5.52902 5.56482 5.62354 5.67216 5.73885 6.01654 6.76925 6.91730 8.35342 8.59209 Molecular weight = 208.12amu Principal moments of inertia in cm(-1) A = 0.053331 B = 0.010038 C = 0.009509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.895135 B = 2788.603000 C = 2943.985341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.028 3.972 3 Si 0.986 3.014 4 H -0.249 1.249 5 H -0.265 1.265 6 H -0.265 1.265 7 C -0.569 4.569 8 H 0.077 0.923 9 C 0.354 3.646 10 O -0.582 6.582 11 C -0.120 4.120 12 H 0.065 0.935 13 C -0.103 4.103 14 C -0.080 4.080 15 C -0.103 4.103 16 C -0.105 4.105 17 C -0.066 4.066 18 C -0.109 4.109 19 C -0.102 4.102 20 H 0.278 0.722 21 H 0.035 0.965 22 H 0.063 0.937 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.020 0.980 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.550 -8.619 -2.743 11.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.191 4.191 3 Si 0.806 3.194 4 H -0.172 1.172 5 H -0.190 1.190 6 H -0.189 1.189 7 C -0.601 4.601 8 H 0.095 0.905 9 C 0.251 3.749 10 O -0.474 6.474 11 C -0.139 4.139 12 H 0.083 0.917 13 C -0.140 4.140 14 C -0.098 4.098 15 C -0.141 4.141 16 C -0.142 4.142 17 C -0.084 4.084 18 C -0.147 4.147 19 C -0.140 4.140 20 H 0.088 0.912 21 H 0.053 0.947 22 H 0.081 0.919 23 H 0.095 0.905 24 H 0.099 0.901 25 H 0.090 0.910 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.039 0.961 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 5.809 -8.595 -2.742 10.730 hybrid contribution -0.012 1.255 0.205 1.271 sum 5.798 -7.340 -2.537 9.692 Atomic orbital electron populations 1.70096 1.09678 1.29297 1.33080 1.27177 0.95429 1.05275 0.91190 0.85142 0.79630 0.75773 0.78903 1.17154 1.18989 1.18949 1.21385 0.95551 0.93369 1.49786 0.90485 1.20123 0.88689 0.89867 0.76236 1.90323 1.17448 1.89555 1.50088 1.21534 0.98815 0.96255 0.97321 0.91690 1.21463 0.99109 0.95544 0.97932 1.21004 0.97563 0.96252 0.95030 1.21519 0.94272 0.97398 1.00889 1.21532 0.97892 0.93227 1.01574 1.20804 0.96153 0.97869 0.93608 1.21433 0.96246 0.98118 0.98883 1.21406 0.97450 0.97610 0.97523 0.91152 0.94666 0.91870 0.90493 0.90126 0.91006 0.90458 0.91452 0.92850 0.96081 0.90903 0.90153 0.95203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -48.02 11.72 21.91 0.26 -47.77 16 2 C 0.03 1.55 5.50 85.43 0.47 2.02 16 3 Si 0.99 40.96 29.56 68.60 2.03 42.99 16 4 H -0.25 -9.69 7.11 99.48 0.71 -8.99 16 5 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 6 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 7 C -0.57 -32.84 9.21 23.50 0.22 -32.63 16 8 H 0.08 4.11 7.85 -2.91 -0.02 4.08 16 9 C 0.35 20.46 5.03 26.37 0.13 20.60 16 10 O -0.58 -38.16 13.30 -3.52 -0.05 -38.21 16 11 C -0.12 -5.41 2.45 -11.52 -0.03 -5.44 16 12 H 0.06 2.81 8.11 -2.38 -0.02 2.79 16 13 C -0.10 -4.23 5.25 30.59 0.16 -4.07 16 14 C -0.08 -2.63 3.20 -10.79 -0.03 -2.66 16 15 C -0.10 -2.66 5.71 30.60 0.17 -2.48 16 16 C -0.10 -2.95 5.71 30.60 0.17 -2.78 16 17 C -0.07 -2.53 2.71 -10.78 -0.03 -2.56 16 18 C -0.11 -4.35 5.38 30.59 0.16 -4.19 16 19 C -0.10 -3.69 5.71 30.60 0.17 -3.52 16 20 H 0.28 15.13 8.29 -92.71 -0.77 14.36 16 21 H 0.03 1.73 6.63 -2.39 -0.02 1.71 16 22 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 23 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 24 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.02 1.03 6.76 -2.39 -0.02 1.02 16 30 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -70.80 250.82 4.90 -65.90 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 1.08 Total: 14.79 kcal Atomic # 6 Polarization: -39.29 SS G_CDS: 1.58 Total: -37.71 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: 0.26 Total: -47.77 kcal Atomic # 8 Polarization: -38.16 SS G_CDS: -0.05 Total: -38.21 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.99 kcal Total: -70.80 4.90 -65.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306965839.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.770 kcal (2) G-P(sol) polarization free energy of solvation -70.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds