Wall clock time and date at job start Mon Mar 30 2020 02:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35902 * 116.99880 * 2 1 4 4 C 1.38202 * 119.89024 * 179.97438 * 3 2 1 5 5 C 1.40656 * 119.83863 * 179.97438 * 4 3 2 6 6 C 1.41415 * 120.18136 * 179.97438 * 5 4 3 7 7 H 1.07994 * 119.99623 * 204.55608 * 6 5 4 8 8 C 1.39922 * 119.99781 * 24.55982 * 6 5 4 9 9 N 1.30828 * 120.00014 * 17.94126 * 8 6 5 10 10 Si 1.86797 * 119.99612 * 197.93805 * 8 6 5 11 11 H 1.48497 * 109.47104 * 90.00522 * 10 8 6 12 12 H 1.48509 * 109.46807 * 209.99792 * 10 8 6 13 13 H 1.48493 * 109.47527 * 329.99963 * 10 8 6 14 14 C 1.40641 * 119.63857 * 0.02562 * 5 4 3 15 15 C 1.38323 * 119.78356 * 359.97438 * 14 5 4 16 16 N 1.39674 * 119.92264 * 179.97438 * 15 14 5 17 17 N 1.36597 * 120.00343 * 180.02562 * 16 15 14 18 18 C 1.38966 * 119.89548 * 359.97287 * 3 2 1 19 19 H 1.09003 * 109.46984 * 300.00681 * 1 2 3 20 20 H 1.08998 * 109.46992 * 60.00161 * 1 2 3 21 21 H 1.09003 * 109.47137 * 180.02562 * 1 2 3 22 22 H 1.07999 * 120.08161 * 0.25487 * 4 3 2 23 23 H 0.96999 * 120.00201 * 180.02562 * 9 8 6 24 24 H 1.07997 * 120.10964 * 179.97438 * 14 5 4 25 25 H 0.97003 * 120.00039 * 359.97438 * 16 15 14 26 26 H 1.00893 * 111.00611 * 180.02562 * 17 16 15 27 27 H 1.00900 * 111.00012 * 303.96116 * 17 16 15 28 28 H 1.08000 * 119.81366 * 0.04819 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4262 1.2806 0.0005 5 6 4.0637 2.5345 0.0000 6 6 5.4756 2.6142 0.0011 7 1 5.9663 3.4944 0.3894 8 6 6.2366 1.5529 -0.5011 9 7 5.6803 0.6590 -1.2777 10 14 8.0469 1.4124 -0.0626 11 1 8.1952 0.6064 1.1758 12 1 8.7755 0.7501 -1.1744 13 1 8.6093 2.7687 0.1592 14 6 3.2892 3.7084 -0.0006 15 6 1.9087 3.6208 -0.0011 16 7 1.1367 4.7848 -0.0011 17 7 -0.2266 4.7002 -0.0011 18 6 1.2870 2.3750 -0.0006 19 1 -0.3633 0.5140 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 4.0140 0.3746 -0.0032 23 1 6.2077 -0.0770 -1.6255 24 1 3.7706 4.6751 -0.0006 25 1 1.5687 5.6533 -0.0003 26 1 -0.6459 5.6179 -0.0015 27 1 -0.5550 4.1526 -0.7824 28 1 0.2088 2.3130 -0.0002 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307161474.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:31 Heat of formation + Delta-G solvation = 6.471847 kcal Electronic energy + Delta-G solvation = -13319.005234 eV Core-core repulsion = 10949.762811 eV Total energy + Delta-G solvation = -2369.242423 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.70371 -37.02247 -35.38219 -33.09141 -29.70922 -29.16766 -27.04938 -25.30311 -24.97895 -20.83062 -20.34110 -18.02114 -16.76255 -16.08764 -15.33695 -14.80429 -14.68996 -14.42218 -14.33079 -13.52455 -12.82762 -12.28503 -11.94677 -11.58592 -11.12289 -11.00711 -10.90170 -10.62794 -10.37219 -9.77587 -9.71188 -9.60111 -9.03622 -7.93444 -7.08102 -6.67990 -6.02193 -4.32988 2.88354 3.12950 3.16261 3.25302 3.35762 3.82276 4.00615 4.45290 4.72681 5.55636 5.76131 5.79995 5.89250 6.01883 6.56671 6.73414 6.82557 6.92138 7.15141 7.35161 7.46944 7.59267 7.89043 8.04364 8.17899 8.45768 8.51212 8.85475 9.01270 9.04344 9.12012 10.26808 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.034667 B = 0.010181 C = 0.008068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.501599 B = 2749.521261 C = 3469.617556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.329 6.329 3 C 0.155 3.845 4 C -0.228 4.228 5 C 0.167 3.833 6 C -0.461 4.461 7 H 0.079 0.921 8 C 0.078 3.922 9 N -0.784 5.784 10 Si 0.908 3.092 11 H -0.267 1.267 12 H -0.279 1.279 13 H -0.263 1.263 14 C -0.313 4.313 15 C 0.259 3.741 16 N -0.616 5.616 17 N -0.601 5.601 18 C -0.362 4.362 19 H 0.045 0.955 20 H 0.042 0.958 21 H 0.080 0.920 22 H 0.123 0.877 23 H 0.280 0.720 24 H 0.091 0.909 25 H 0.392 0.608 26 H 0.339 0.661 27 H 0.322 0.678 28 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.891 2.617 0.337 6.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.243 6.243 3 C 0.111 3.889 4 C -0.249 4.249 5 C 0.164 3.836 6 C -0.491 4.491 7 H 0.097 0.903 8 C -0.141 4.141 9 N -0.409 5.409 10 Si 0.732 3.268 11 H -0.192 1.192 12 H -0.204 1.204 13 H -0.187 1.187 14 C -0.338 4.338 15 C 0.159 3.841 16 N -0.344 5.344 17 N -0.223 5.223 18 C -0.386 4.386 19 H 0.064 0.936 20 H 0.061 0.939 21 H 0.099 0.901 22 H 0.141 0.859 23 H 0.091 0.909 24 H 0.109 0.891 25 H 0.228 0.772 26 H 0.151 0.849 27 H 0.136 0.864 28 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.840 1.782 0.880 6.169 hybrid contribution 0.547 0.995 -0.911 1.456 sum -5.293 2.777 -0.031 5.977 Atomic orbital electron populations 1.22721 0.80979 1.01549 1.00513 1.86010 1.19369 1.29145 1.89798 1.18693 0.92170 0.82093 0.95969 1.20474 0.89166 0.99129 1.16110 1.16977 0.92630 0.89270 0.84734 1.19521 0.90961 1.02273 1.36333 0.90289 1.25921 1.01013 0.94561 0.92599 1.69874 1.38371 1.10836 1.21789 0.86334 0.81923 0.79497 0.79049 1.19232 1.20396 1.18676 1.20281 0.90149 0.97783 1.25555 1.17042 0.89305 0.84116 0.93596 1.43233 0.98202 1.06261 1.86676 1.60200 0.94081 1.19536 1.48531 1.19840 0.97547 0.90790 1.30401 0.93635 0.93890 0.90143 0.85878 0.90893 0.89052 0.77154 0.84918 0.86405 0.87964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.66 9.81 101.05 0.99 1.65 15 2 O -0.33 -7.65 10.49 -19.43 -0.20 -7.85 15 3 C 0.16 3.97 6.67 -39.32 -0.26 3.71 15 4 C -0.23 -6.35 8.63 -38.68 -0.33 -6.68 15 5 C 0.17 4.63 5.57 -106.87 -0.60 4.04 15 6 C -0.46 -12.51 9.05 -37.74 -0.34 -12.85 15 7 H 0.08 2.04 7.91 -52.49 -0.42 1.63 15 8 C 0.08 2.00 5.13 -17.35 -0.09 1.91 15 9 N -0.78 -20.96 10.96 55.55 0.61 -20.35 15 10 Si 0.91 18.99 29.60 -169.99 -5.03 13.96 15 11 H -0.27 -5.55 7.11 56.52 0.40 -5.15 15 12 H -0.28 -5.69 7.11 56.52 0.40 -5.29 15 13 H -0.26 -5.39 7.11 56.52 0.40 -4.99 15 14 C -0.31 -7.89 9.63 -38.64 -0.37 -8.26 15 15 C 0.26 6.00 6.68 -83.88 -0.56 5.44 15 16 N -0.62 -11.33 6.65 32.36 0.22 -11.12 15 17 N -0.60 -9.16 9.59 60.35 0.58 -8.58 15 18 C -0.36 -8.57 8.36 -38.94 -0.33 -8.89 15 19 H 0.05 0.75 7.65 -51.93 -0.40 0.36 15 20 H 0.04 0.70 7.65 -51.93 -0.40 0.31 15 21 H 0.08 1.12 8.14 -51.93 -0.42 0.70 15 22 H 0.12 3.59 6.15 -52.49 -0.32 3.27 15 23 H 0.28 6.80 8.30 -40.82 -0.34 6.46 15 24 H 0.09 2.15 8.06 -52.49 -0.42 1.73 15 25 H 0.39 6.31 8.84 -185.15 -1.64 4.68 15 26 H 0.34 3.84 9.21 -181.37 -1.67 2.17 15 27 H 0.32 4.76 8.42 -181.37 -1.53 3.23 15 28 H 0.10 2.19 5.22 -52.49 -0.27 1.91 15 LS Contribution 243.67 15.07 3.67 3.67 Total: -1.00 -30.51 243.67 -8.67 -39.18 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: -6.62 Total: 11.02 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: -1.89 Total: -19.93 kcal Atomic # 7 Polarization: -41.45 SS G_CDS: 1.40 Total: -40.05 kcal Atomic # 8 Polarization: -7.65 SS G_CDS: -0.20 Total: -7.85 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.96 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -30.51 -8.67 -39.18 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307161474.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.654 kcal (2) G-P(sol) polarization free energy of solvation -30.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds