Wall clock time and date at job start Mon Mar 30 2020 02:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35669 * 117.00357 * 2 1 4 4 C 1.38041 * 120.21162 * 359.97438 * 3 2 1 5 5 C 1.39208 * 119.98195 * 180.02562 * 4 3 2 6 6 N 1.38923 * 119.80234 * 180.02562 * 5 4 3 7 7 N 1.36594 * 120.00445 * 180.02562 * 6 5 4 8 8 C 1.39725 * 120.40692 * 0.02562 * 5 4 3 9 9 C 1.36228 * 120.42554 * 359.72809 * 8 5 4 10 10 C 1.40859 * 120.01195 * 0.52407 * 9 8 5 11 11 C 1.40969 * 120.20297 * 179.75796 * 10 9 8 12 12 H 1.08001 * 120.00044 * 208.72799 * 11 10 9 13 13 C 1.39838 * 119.99918 * 28.73052 * 11 10 9 14 14 N 1.30952 * 120.00269 * 197.90687 * 13 11 10 15 15 Si 1.86804 * 120.00182 * 17.90571 * 13 11 10 16 16 H 1.48503 * 109.47216 * 270.00355 * 15 13 11 17 17 H 1.48504 * 109.46823 * 29.99772 * 15 13 11 18 18 H 1.48496 * 109.47382 * 149.99844 * 15 13 11 19 19 H 1.09003 * 109.46777 * 300.00358 * 1 2 3 20 20 H 1.09001 * 109.46775 * 60.00001 * 1 2 3 21 21 H 1.08999 * 109.47187 * 180.02562 * 1 2 3 22 22 H 1.07999 * 120.00797 * 0.02562 * 4 3 2 23 23 H 0.97005 * 119.99256 * 0.02562 * 6 5 4 24 24 H 1.00903 * 111.00104 * 180.02562 * 7 6 5 25 25 H 1.00897 * 110.99949 * 303.95278 * 7 6 5 26 26 H 1.07991 * 119.78852 * 179.97438 * 8 5 4 27 27 H 1.08004 * 119.99556 * 180.25669 * 9 8 5 28 28 H 0.97008 * 119.99744 * 355.43385 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 1.2975 2.3693 -0.0005 5 6 1.9345 3.6071 -0.0011 6 7 1.1786 4.7726 -0.0011 7 7 1.7994 5.9894 -0.0021 8 6 3.3296 3.6844 -0.0016 9 6 4.0835 2.5498 0.0040 10 6 3.4575 1.2879 -0.0009 11 6 4.2337 0.1112 -0.0003 12 1 3.8480 -0.7903 -0.4530 13 6 5.5029 0.1111 0.5866 14 7 6.3590 -0.8361 0.2954 15 14 5.9775 1.4624 1.7860 16 1 6.5940 2.5903 1.0423 17 1 4.7648 1.9420 2.4964 18 1 6.9508 0.9291 2.7727 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 0.2188 2.3170 -0.0005 23 1 0.2099 4.7224 -0.0003 24 1 1.1247 6.7396 -0.0016 25 1 2.4329 6.0727 0.7787 26 1 3.8134 4.6499 -0.0024 27 1 5.1614 2.6177 0.0077 28 1 6.0909 -1.5735 -0.2751 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307276475.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:59 Heat of formation + Delta-G solvation = 11.853414 kcal Electronic energy + Delta-G solvation = -13477.747010 eV Core-core repulsion = 11108.737950 eV Total energy + Delta-G solvation = -2369.009061 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.97977 -37.19368 -35.37246 -33.22614 -30.49854 -29.02622 -27.14733 -26.60973 -23.47539 -21.48357 -20.16796 -18.10446 -17.57262 -16.93915 -15.32899 -14.80007 -14.73907 -14.41306 -14.07365 -13.73162 -12.97196 -12.59144 -12.21585 -11.94541 -11.39898 -11.02979 -10.63340 -10.52561 -10.39301 -9.93203 -9.67751 -9.22709 -8.89723 -8.15873 -7.31109 -7.10453 -6.44950 -4.06655 2.65475 2.82095 3.31909 3.47251 3.65534 3.74551 4.19970 4.38563 4.69349 5.46467 5.52226 5.66285 5.73134 5.83933 5.98808 6.24706 6.51204 6.66004 6.83080 7.07445 7.26674 7.50920 7.67122 7.81024 7.92415 8.28264 8.39866 8.66409 8.80280 8.89126 9.08225 10.28941 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.027139 B = 0.013824 C = 0.009678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.469628 B = 2024.935852 C = 2892.373313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.306 6.306 3 C 0.060 3.940 4 C -0.231 4.231 5 C 0.126 3.874 6 N -0.614 5.614 7 N -0.599 5.599 8 C -0.152 4.152 9 C -0.190 4.190 10 C 0.053 3.947 11 C -0.506 4.506 12 H 0.076 0.924 13 C 0.037 3.963 14 N -0.835 5.835 15 Si 1.074 2.926 16 H -0.279 1.279 17 H -0.266 1.266 18 H -0.293 1.293 19 H 0.041 0.959 20 H 0.040 0.960 21 H 0.083 0.917 22 H 0.101 0.899 23 H 0.388 0.612 24 H 0.340 0.660 25 H 0.322 0.678 26 H 0.103 0.897 27 H 0.113 0.887 28 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.730 7.653 1.879 11.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.220 6.220 3 C 0.014 3.986 4 C -0.254 4.254 5 C 0.028 3.972 6 N -0.344 5.344 7 N -0.222 5.222 8 C -0.175 4.175 9 C -0.210 4.210 10 C 0.049 3.951 11 C -0.537 4.537 12 H 0.094 0.906 13 C -0.179 4.179 14 N -0.459 5.459 15 Si 0.902 3.098 16 H -0.206 1.206 17 H -0.191 1.191 18 H -0.221 1.221 19 H 0.059 0.941 20 H 0.059 0.941 21 H 0.102 0.898 22 H 0.119 0.881 23 H 0.223 0.777 24 H 0.151 0.849 25 H 0.136 0.864 26 H 0.121 0.879 27 H 0.130 0.870 28 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -6.914 7.809 2.065 10.632 hybrid contribution -2.507 -0.218 -0.128 2.520 sum -9.421 7.591 1.937 12.253 Atomic orbital electron populations 1.22770 0.81577 1.01966 0.99947 1.86032 1.18349 1.27896 1.89729 1.18883 0.92035 0.82218 1.05444 1.20072 0.97445 0.91305 1.16611 1.16781 0.90329 0.83407 1.06667 1.42616 1.04958 0.98767 1.88088 1.60234 1.19021 0.94379 1.48563 1.19826 0.91342 0.97692 1.08630 1.20509 0.98503 0.91512 1.10488 1.17122 0.88157 0.93757 0.96109 1.20256 1.01355 0.97649 1.34415 0.90598 1.27124 0.91753 1.01580 0.97415 1.70582 1.34786 1.10262 1.30315 0.83579 0.76671 0.73815 0.75726 1.20592 1.19099 1.22083 0.94068 0.94103 0.89850 0.88121 0.77653 0.84869 0.86417 0.87915 0.86953 0.90662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 9.81 101.05 0.99 1.55 15 2 O -0.31 -7.15 9.83 -18.71 -0.18 -7.33 15 3 C 0.06 1.47 6.71 -38.42 -0.26 1.21 15 4 C -0.23 -4.95 8.86 -39.29 -0.35 -5.30 15 5 C 0.13 2.64 6.70 -83.73 -0.56 2.08 15 6 N -0.61 -10.17 6.62 32.48 0.22 -9.96 15 7 N -0.60 -8.41 9.57 60.35 0.58 -7.84 15 8 C -0.15 -3.43 9.27 -39.75 -0.37 -3.80 15 9 C -0.19 -4.76 7.20 -39.31 -0.28 -5.04 15 10 C 0.05 1.41 5.15 -106.64 -0.55 0.86 15 11 C -0.51 -14.55 9.05 -37.95 -0.34 -14.89 15 12 H 0.08 2.31 7.88 -52.49 -0.41 1.89 15 13 C 0.04 1.05 5.41 -17.33 -0.09 0.95 15 14 N -0.83 -23.79 13.66 55.54 0.76 -23.03 15 15 Si 1.07 25.54 24.90 -169.99 -4.23 21.30 15 16 H -0.28 -6.24 6.43 56.52 0.36 -5.88 15 17 H -0.27 -6.27 7.04 56.52 0.40 -5.87 15 18 H -0.29 -6.76 7.11 56.52 0.40 -6.36 15 19 H 0.04 0.63 7.66 -51.93 -0.40 0.23 15 20 H 0.04 0.63 7.66 -51.93 -0.40 0.23 15 21 H 0.08 1.16 8.14 -51.93 -0.42 0.74 15 22 H 0.10 1.85 6.29 -52.49 -0.33 1.52 15 23 H 0.39 5.43 8.83 -185.15 -1.63 3.79 15 24 H 0.34 3.48 9.21 -181.37 -1.67 1.81 15 25 H 0.32 4.36 8.40 -181.37 -1.52 2.84 15 26 H 0.10 2.10 6.99 -52.49 -0.37 1.73 15 27 H 0.11 2.79 4.39 -52.48 -0.23 2.56 15 28 H 0.28 7.89 8.73 -40.82 -0.36 7.53 15 LS Contribution 237.51 15.07 3.58 3.58 Total: -1.00 -31.18 237.51 -7.68 -38.86 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -6.58 Total: 6.77 kcal Atomic # 6 Polarization: -20.55 SS G_CDS: -1.81 Total: -22.37 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: 1.55 Total: -40.82 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: -0.18 Total: -7.33 kcal Atomic # 14 Polarization: 25.54 SS G_CDS: -4.23 Total: 21.30 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -31.18 -7.68 -38.86 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307276475.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.717 kcal (2) G-P(sol) polarization free energy of solvation -31.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds