Wall clock time and date at job start Mon Mar 30 2020 02:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35669 * 117.00357 * 2 1 4 4 C 1.38041 * 120.21162 * 359.97438 * 3 2 1 5 5 C 1.39208 * 119.98195 * 180.02562 * 4 3 2 6 6 N 1.38923 * 119.80234 * 180.02562 * 5 4 3 7 7 N 1.36594 * 120.00445 * 180.02562 * 6 5 4 8 8 C 1.39725 * 120.40692 * 0.02562 * 5 4 3 9 9 C 1.36228 * 120.42554 * 359.72809 * 8 5 4 10 10 C 1.40859 * 120.01195 * 0.52407 * 9 8 5 11 11 C 1.40969 * 120.20297 * 179.75796 * 10 9 8 12 12 H 1.08001 * 120.00044 * 208.72799 * 11 10 9 13 13 C 1.39838 * 119.99918 * 28.73052 * 11 10 9 14 14 N 1.30952 * 120.00269 * 197.90687 * 13 11 10 15 15 Si 1.86804 * 120.00182 * 17.90571 * 13 11 10 16 16 H 1.48503 * 109.47216 * 270.00355 * 15 13 11 17 17 H 1.48504 * 109.46823 * 29.99772 * 15 13 11 18 18 H 1.48496 * 109.47382 * 149.99844 * 15 13 11 19 19 H 1.09003 * 109.46777 * 300.00358 * 1 2 3 20 20 H 1.09001 * 109.46775 * 60.00001 * 1 2 3 21 21 H 1.08999 * 109.47187 * 180.02562 * 1 2 3 22 22 H 1.07999 * 120.00797 * 0.02562 * 4 3 2 23 23 H 0.97005 * 119.99256 * 0.02562 * 6 5 4 24 24 H 1.00903 * 111.00104 * 180.02562 * 7 6 5 25 25 H 1.00897 * 110.99949 * 303.95278 * 7 6 5 26 26 H 1.07991 * 119.78852 * 179.97438 * 8 5 4 27 27 H 1.08004 * 119.99556 * 180.25669 * 9 8 5 28 28 H 0.97008 * 119.99744 * 355.43385 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 1.2975 2.3693 -0.0005 5 6 1.9345 3.6071 -0.0011 6 7 1.1786 4.7726 -0.0011 7 7 1.7994 5.9894 -0.0021 8 6 3.3296 3.6844 -0.0016 9 6 4.0835 2.5498 0.0040 10 6 3.4575 1.2879 -0.0009 11 6 4.2337 0.1112 -0.0003 12 1 3.8480 -0.7903 -0.4530 13 6 5.5029 0.1111 0.5866 14 7 6.3590 -0.8361 0.2954 15 14 5.9775 1.4624 1.7860 16 1 6.5940 2.5903 1.0423 17 1 4.7648 1.9420 2.4964 18 1 6.9508 0.9291 2.7727 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 0.2188 2.3170 -0.0005 23 1 0.2099 4.7224 -0.0003 24 1 1.1247 6.7396 -0.0016 25 1 2.4329 6.0727 0.7787 26 1 3.8134 4.6499 -0.0024 27 1 5.1614 2.6177 0.0077 28 1 6.0909 -1.5735 -0.2751 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307276475.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:59 Heat of formation + Delta-G solvation = -12.090149 kcal Electronic energy + Delta-G solvation = -13478.785281 eV Core-core repulsion = 11108.737950 eV Total energy + Delta-G solvation = -2370.047331 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.72298 -38.77068 -37.04542 -35.10976 -32.22478 -30.79440 -28.72483 -28.07373 -25.27623 -23.26671 -21.94543 -20.06024 -19.16015 -18.40044 -16.77384 -16.43551 -16.33534 -16.17936 -15.87929 -15.30237 -14.80607 -14.38329 -13.82014 -13.65173 -13.07303 -12.63091 -12.35030 -12.28469 -12.07959 -11.69180 -11.40095 -11.17275 -10.78112 -9.84694 -9.20549 -8.99405 -8.09358 -6.10406 0.82707 0.97172 1.41171 1.60034 1.80726 2.29661 2.41258 2.75411 2.83178 3.53995 4.15606 4.36211 4.41020 4.45219 4.53170 4.70871 4.81308 4.98910 5.04221 5.53356 5.57069 5.69017 5.80331 5.96358 6.14518 6.33327 6.60000 6.83991 6.98335 7.20432 7.61693 8.20367 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.027139 B = 0.013824 C = 0.009678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.469628 B = 2024.935852 C = 2892.373313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.342 6.342 3 C 0.059 3.941 4 C -0.238 4.238 5 C 0.162 3.838 6 N -0.600 5.600 7 N -0.608 5.608 8 C -0.174 4.174 9 C -0.182 4.182 10 C 0.004 3.996 11 C -0.539 4.539 12 H 0.032 0.968 13 C -0.002 4.002 14 N -0.871 5.871 15 Si 1.110 2.890 16 H -0.256 1.256 17 H -0.264 1.264 18 H -0.285 1.285 19 H 0.059 0.941 20 H 0.057 0.943 21 H 0.107 0.893 22 H 0.138 0.862 23 H 0.406 0.594 24 H 0.366 0.634 25 H 0.332 0.668 26 H 0.128 0.872 27 H 0.109 0.891 28 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.057 11.065 2.430 15.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.256 6.256 3 C 0.013 3.987 4 C -0.262 4.262 5 C 0.061 3.939 6 N -0.328 5.328 7 N -0.235 5.235 8 C -0.197 4.197 9 C -0.201 4.201 10 C 0.000 4.000 11 C -0.571 4.571 12 H 0.051 0.949 13 C -0.210 4.210 14 N -0.498 5.498 15 Si 0.931 3.069 16 H -0.181 1.181 17 H -0.188 1.188 18 H -0.212 1.212 19 H 0.078 0.922 20 H 0.076 0.924 21 H 0.126 0.874 22 H 0.156 0.844 23 H 0.244 0.756 24 H 0.181 0.819 25 H 0.147 0.853 26 H 0.146 0.854 27 H 0.127 0.873 28 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.315 11.278 2.601 14.857 hybrid contribution -2.163 -1.037 -0.371 2.427 sum -11.478 10.241 2.230 15.543 Atomic orbital electron populations 1.23155 0.78138 1.04333 1.01492 1.85997 1.22028 1.27994 1.89592 1.19114 0.91803 0.83749 1.04031 1.20336 0.99230 0.90288 1.16358 1.16992 0.90311 0.84898 1.01743 1.42550 1.05691 0.98622 1.85963 1.60064 1.20193 0.93802 1.49420 1.20054 0.92152 0.97829 1.09668 1.20627 0.98775 0.91711 1.09026 1.17312 0.89698 0.93750 0.99250 1.20096 1.02867 0.97292 1.36887 0.94922 1.28259 0.91682 1.03016 0.98088 1.70671 1.35297 1.11304 1.32518 0.83166 0.76754 0.72547 0.74418 1.18123 1.18840 1.21223 0.92233 0.92448 0.87431 0.84433 0.75574 0.81926 0.85340 0.85444 0.87321 0.92142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.73 9.81 113.37 1.11 1.84 15 2 O -0.34 -15.96 9.83 -89.86 -0.88 -16.84 15 3 C 0.06 2.86 6.71 23.02 0.15 3.01 15 4 C -0.24 -9.39 8.86 22.46 0.20 -9.19 15 5 C 0.16 6.09 6.70 38.61 0.26 6.35 15 6 N -0.60 -16.47 6.62 -51.15 -0.34 -16.81 15 7 N -0.61 -13.71 9.57 37.02 0.35 -13.35 15 8 C -0.17 -7.26 9.27 22.16 0.21 -7.06 15 9 C -0.18 -8.91 7.20 22.44 0.16 -8.75 15 10 C 0.00 0.20 5.15 -21.17 -0.11 0.09 15 11 C -0.54 -32.91 9.05 23.33 0.21 -32.70 15 12 H 0.03 2.17 7.88 -2.91 -0.02 2.15 15 13 C 0.00 -0.13 5.41 85.21 0.46 0.34 15 14 N -0.87 -52.74 13.66 21.81 0.30 -52.44 15 15 Si 1.11 52.28 24.90 68.60 1.71 53.98 15 16 H -0.26 -10.94 6.43 99.48 0.64 -10.30 15 17 H -0.26 -12.12 7.04 99.48 0.70 -11.42 15 18 H -0.29 -12.87 7.11 99.48 0.71 -12.16 15 19 H 0.06 1.62 7.66 -2.39 -0.02 1.60 15 20 H 0.06 1.58 7.66 -2.39 -0.02 1.56 15 21 H 0.11 2.76 8.14 -2.39 -0.02 2.74 15 22 H 0.14 4.33 6.29 -2.91 -0.02 4.32 15 23 H 0.41 8.81 8.83 -215.49 -1.90 6.91 15 24 H 0.37 5.38 9.21 -210.56 -1.94 3.45 15 25 H 0.33 7.19 8.40 -210.56 -1.77 5.42 15 26 H 0.13 4.65 6.99 -2.92 -0.02 4.63 15 27 H 0.11 5.32 4.39 -2.91 -0.01 5.31 15 28 H 0.27 16.33 8.73 -92.70 -0.81 15.52 15 Total: -1.00 -71.10 237.51 -0.71 -71.81 By element: Atomic # 1 Polarization: 24.22 SS G_CDS: -4.50 Total: 19.72 kcal Atomic # 6 Polarization: -48.72 SS G_CDS: 2.66 Total: -46.07 kcal Atomic # 7 Polarization: -82.92 SS G_CDS: 0.31 Total: -82.61 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.88 Total: -16.84 kcal Atomic # 14 Polarization: 52.28 SS G_CDS: 1.71 Total: 53.98 kcal Total: -71.10 -0.71 -71.81 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307276475.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.722 kcal (2) G-P(sol) polarization free energy of solvation -71.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds