Wall clock time and date at job start Mon Mar 30 2020 02:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50693 * 109.47190 * 2 1 4 4 C 1.38218 * 119.99297 * 265.00392 * 3 2 1 5 5 C 1.38437 * 119.97959 * 180.02562 * 4 3 2 6 6 F 1.35097 * 120.02821 * 180.02562 * 5 4 3 7 7 C 1.38485 * 119.94727 * 359.97438 * 5 4 3 8 8 C 1.38178 * 119.97209 * 359.97438 * 7 5 4 9 9 C 1.38231 * 119.98711 * 85.28005 * 3 2 1 10 10 C 1.50696 * 119.97270 * 0.02562 * 9 3 2 11 11 C 1.50701 * 109.46849 * 85.25552 * 10 9 3 12 12 H 1.07998 * 120.00267 * 359.97438 * 11 10 9 13 13 C 1.37883 * 119.99801 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99961 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99846 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46923 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.47046 * 120.00158 * 15 13 11 18 18 H 1.48493 * 109.47080 * 240.00402 * 15 13 11 19 19 H 1.08998 * 109.47069 * 299.99898 * 1 2 3 20 20 H 1.09000 * 109.47500 * 59.99458 * 1 2 3 21 21 H 1.08996 * 109.47509 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.46557 * 240.00817 * 2 1 3 23 23 H 1.08994 * 109.47074 * 120.00411 * 2 1 3 24 24 H 1.08004 * 120.00907 * 0.02562 * 4 3 2 25 25 H 1.08000 * 120.01281 * 179.97438 * 7 5 4 26 26 H 1.08002 * 119.98243 * 179.97438 * 8 7 5 27 27 H 1.08997 * 109.47556 * 205.25359 * 10 9 3 28 28 H 1.09000 * 109.47356 * 325.25753 * 10 9 3 29 29 H 0.96999 * 119.99493 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.3609 2.0374 -1.1925 5 6 2.8229 3.3424 -1.1922 6 9 3.1439 3.9463 -2.3573 7 6 2.9547 4.0288 0.0034 8 6 2.6246 3.4106 1.1943 9 6 2.1697 2.1050 1.1932 10 6 1.8176 1.4293 2.4934 11 6 3.0016 0.6367 2.9843 12 1 3.9173 0.6232 2.4118 13 6 2.9158 -0.0713 4.1644 14 7 1.8006 -0.0553 4.8612 15 14 4.3831 -1.0544 4.7725 16 1 5.5077 -0.9097 3.8135 17 1 4.8007 -0.5477 6.1044 18 1 4.0077 -2.4868 4.8832 19 1 -0.3633 0.5138 0.8900 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0276 -0.0005 22 1 1.8932 -0.5137 -0.8901 23 1 1.8933 -0.5139 0.8899 24 1 2.2573 1.5013 -2.1244 25 1 3.3154 5.0468 0.0049 26 1 2.7277 3.9456 2.1268 27 1 1.5526 2.1832 3.2346 28 1 0.9716 0.7599 2.3375 29 1 1.7404 -0.5531 5.6915 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307329461.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:03 Heat of formation + Delta-G solvation = -62.114929 kcal Electronic energy + Delta-G solvation = -13216.390874 eV Core-core repulsion = 10824.254344 eV Total energy + Delta-G solvation = -2392.136530 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.096 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.78813 -40.36538 -35.50881 -34.75409 -32.71220 -30.51360 -28.60020 -25.41022 -24.62594 -22.73248 -21.42277 -18.49906 -18.04149 -17.44489 -16.80962 -16.49553 -15.94739 -15.13607 -15.00916 -14.56336 -14.42230 -13.93799 -13.83333 -13.19012 -13.15462 -12.78303 -12.56291 -12.45036 -12.37510 -11.81032 -11.56208 -11.42317 -11.34579 -10.56069 -9.77180 -9.24112 -8.17050 -6.28482 0.36169 0.39075 1.40088 1.42281 1.54010 2.40704 2.78069 3.14366 3.35937 3.85336 3.98908 4.21570 4.36026 4.40171 4.55006 4.62509 4.73991 5.03512 5.07628 5.18775 5.24007 5.26523 5.34404 5.41476 5.53711 5.61284 5.80054 6.03854 6.08107 6.24348 6.83783 7.39324 8.91958 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.035895 B = 0.009222 C = 0.008353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.857403 B = 3035.377613 C = 3351.248246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.087 4.087 3 C -0.063 4.063 4 C -0.150 4.150 5 C 0.065 3.935 6 F -0.147 7.147 7 C -0.153 4.153 8 C -0.106 4.106 9 C -0.072 4.072 10 C 0.057 3.943 11 C -0.519 4.519 12 H 0.051 0.949 13 C 0.010 3.990 14 N -0.927 5.927 15 Si 0.957 3.043 16 H -0.267 1.267 17 H -0.279 1.279 18 H -0.277 1.277 19 H 0.037 0.963 20 H 0.066 0.934 21 H 0.068 0.932 22 H 0.086 0.914 23 H 0.065 0.935 24 H 0.151 0.849 25 H 0.152 0.848 26 H 0.130 0.870 27 H 0.000 1.000 28 H 0.023 0.977 29 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.306 2.987 -10.096 10.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.124 4.124 3 C -0.063 4.063 4 C -0.168 4.168 5 C 0.046 3.954 6 F -0.126 7.126 7 C -0.172 4.172 8 C -0.124 4.124 9 C -0.072 4.072 10 C 0.020 3.980 11 C -0.557 4.557 12 H 0.069 0.931 13 C -0.188 4.188 14 N -0.567 5.567 15 Si 0.782 3.218 16 H -0.192 1.192 17 H -0.205 1.205 18 H -0.202 1.202 19 H 0.056 0.944 20 H 0.085 0.915 21 H 0.087 0.913 22 H 0.105 0.895 23 H 0.084 0.916 24 H 0.169 0.831 25 H 0.170 0.830 26 H 0.148 0.852 27 H 0.019 0.981 28 H 0.042 0.958 29 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.239 2.944 -9.992 10.419 hybrid contribution 0.651 -0.298 0.618 0.946 sum 0.890 2.646 -9.374 9.781 Atomic orbital electron populations 1.21662 0.94072 1.02222 1.01452 1.20566 0.96839 0.91819 1.03180 1.19755 0.98124 0.96974 0.91441 1.21107 1.02667 0.93772 0.99280 1.17667 1.03807 0.92541 0.81353 1.91438 1.90961 1.83495 1.46693 1.21215 1.03581 1.01645 0.90720 1.21035 0.98805 0.94519 0.98028 1.20477 0.96460 0.94115 0.96159 1.18147 0.96500 0.94462 0.88845 1.21306 0.98842 1.29103 1.06478 0.93067 1.25786 0.98535 0.97676 0.96818 1.70069 1.27630 1.43170 1.15824 0.85517 0.79601 0.78480 0.78206 1.19161 1.20505 1.20234 0.94384 0.91541 0.91290 0.89542 0.91617 0.83125 0.83016 0.85218 0.98144 0.95839 0.92676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.23 9.72 71.98 0.70 -3.53 15 2 C -0.09 -3.00 5.38 29.85 0.16 -2.84 15 3 C -0.06 -2.33 5.13 -19.87 -0.10 -2.44 15 4 C -0.15 -4.82 9.66 22.31 0.22 -4.60 15 5 C 0.07 2.11 7.30 22.38 0.16 2.27 15 6 F -0.15 -4.48 17.27 44.97 0.78 -3.70 15 7 C -0.15 -4.91 10.03 22.31 0.22 -4.69 15 8 C -0.11 -3.97 9.68 22.26 0.22 -3.75 15 9 C -0.07 -3.05 5.07 -19.86 -0.10 -3.15 15 10 C 0.06 2.90 4.43 29.10 0.13 3.03 15 11 C -0.52 -28.40 8.32 25.60 0.21 -28.18 15 12 H 0.05 2.80 7.74 -2.91 -0.02 2.78 15 13 C 0.01 0.57 5.46 84.66 0.46 1.03 15 14 N -0.93 -54.01 13.29 21.45 0.28 -53.72 15 15 Si 0.96 43.25 29.54 68.60 2.03 45.27 15 16 H -0.27 -11.76 7.11 99.48 0.71 -11.06 15 17 H -0.28 -12.37 7.11 99.48 0.71 -11.66 15 18 H -0.28 -12.16 7.11 99.48 0.71 -11.45 15 19 H 0.04 1.34 6.83 -2.39 -0.02 1.33 15 20 H 0.07 1.76 8.14 -2.39 -0.02 1.74 15 21 H 0.07 1.88 8.14 -2.39 -0.02 1.86 15 22 H 0.09 2.46 8.05 -2.38 -0.02 2.44 15 23 H 0.07 2.74 6.41 -2.39 -0.02 2.72 15 24 H 0.15 3.96 8.06 -2.91 -0.02 3.94 15 25 H 0.15 3.93 8.06 -2.91 -0.02 3.91 15 26 H 0.13 4.67 8.06 -2.91 -0.02 4.65 15 27 H 0.00 0.01 8.05 -2.39 -0.02 -0.01 15 28 H 0.02 1.24 5.63 -2.39 -0.01 1.23 15 29 H 0.26 14.49 8.31 -92.71 -0.77 13.72 15 Total: -1.00 -59.38 253.08 6.50 -52.87 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: 1.13 Total: 6.14 kcal Atomic # 6 Polarization: -49.14 SS G_CDS: 2.28 Total: -46.86 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: 0.28 Total: -53.72 kcal Atomic # 9 Polarization: -4.48 SS G_CDS: 0.78 Total: -3.70 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.27 kcal Total: -59.38 6.50 -52.87 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307329461.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.243 kcal (2) G-P(sol) polarization free energy of solvation -59.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds