Wall clock time and date at job start Mon Mar 30 2020 02:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00131 * 2 1 4 4 H 1.48498 * 109.46854 * 270.00003 * 3 2 1 5 5 H 1.48494 * 109.47149 * 29.99890 * 3 2 1 6 6 H 1.48493 * 109.47225 * 150.00185 * 3 2 1 7 7 C 1.38812 * 119.99866 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00253 * 158.63252 * 7 2 1 9 9 N 1.36935 * 119.99978 * 338.63317 * 7 2 1 10 10 C 1.45271 * 119.66816 * 158.77409 * 9 7 2 11 11 C 1.51592 * 114.54367 * 247.74435 * 10 9 7 12 12 C 1.53628 * 110.77328 * 292.82416 * 11 10 9 13 13 N 1.46935 * 107.62495 * 82.25531 * 12 11 10 14 14 C 1.34628 * 128.76050 * 113.42517 * 13 12 11 15 15 N 1.30941 * 106.96779 * 181.29759 * 14 13 12 16 16 N 1.29061 * 109.74178 * 359.69154 * 15 14 13 17 17 C 1.29539 * 109.25070 * 359.78064 * 16 15 14 18 18 C 1.47375 * 119.66997 * 338.74823 * 9 7 2 19 19 H 0.97005 * 119.99744 * 0.02562 * 1 2 3 20 20 H 1.09000 * 108.46910 * 9.05152 * 10 9 7 21 21 H 1.09003 * 108.47291 * 126.58933 * 10 9 7 22 22 H 1.08997 * 109.21898 * 53.15752 * 11 10 9 23 23 H 1.09007 * 109.22173 * 172.49754 * 11 10 9 24 24 H 1.08999 * 109.82473 * 322.73088 * 12 11 10 25 25 H 1.08994 * 109.83103 * 201.78802 * 12 11 10 26 26 H 1.08000 * 126.51469 * 1.33238 * 14 13 12 27 27 H 1.09008 * 109.97564 * 343.79036 * 18 9 7 28 28 H 1.08996 * 109.98624 * 222.44184 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0345 -1.2345 -0.3402 9 7 1.3961 -2.3471 0.4331 10 6 1.9134 -3.6404 0.0206 11 6 1.0003 -4.4169 -0.9075 12 6 -0.2809 -4.8472 -0.1771 13 7 -1.2060 -3.7057 -0.1916 14 6 -2.3889 -3.5874 -0.8234 15 7 -2.8391 -2.3843 -0.5696 16 7 -2.0035 -1.7571 0.1882 17 6 -0.9984 -2.5317 0.4485 18 6 0.2173 -2.2549 1.3129 19 1 -0.4850 0.8401 -0.0004 20 1 2.8675 -3.4859 -0.4833 21 1 2.0888 -4.2425 0.9122 22 1 0.7348 -3.7887 -1.7578 23 1 1.5234 -5.3033 -1.2666 24 1 -0.0460 -5.1197 0.8518 25 1 -0.7324 -5.6955 -0.6913 26 1 -2.8744 -4.3417 -1.4248 27 1 0.1498 -1.2549 1.7415 28 1 0.2865 -2.9979 2.1074 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307414059.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:58 Heat of formation + Delta-G solvation = 95.841742 kcal Electronic energy + Delta-G solvation = -14272.423190 eV Core-core repulsion = 11939.348888 eV Total energy + Delta-G solvation = -2333.074302 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.66330 -38.42861 -35.95636 -33.48607 -32.36924 -31.16662 -27.70412 -27.21981 -24.86747 -22.91870 -21.70887 -21.10534 -18.83910 -18.01605 -16.81104 -16.49149 -15.98178 -15.58907 -15.33643 -14.82820 -14.48125 -13.92211 -13.31209 -13.19810 -12.71813 -12.50346 -12.20594 -12.14435 -12.07956 -11.81870 -11.69216 -10.79936 -10.62397 -10.56692 -9.75813 -8.87086 -7.75467 -5.26064 1.37794 1.46176 1.50338 1.59012 2.06723 2.42510 2.56372 3.32124 3.64065 3.87678 3.92849 3.97988 4.06732 4.34861 4.57105 4.66936 4.74899 4.90503 5.06136 5.13518 5.28082 5.42898 5.50382 5.67679 5.74297 6.33353 6.48074 7.10954 7.84883 8.25237 8.33810 9.20303 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.037025 B = 0.014584 C = 0.011372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.056888 B = 1919.403532 C = 2461.662876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C -0.041 4.041 3 Si 0.954 3.046 4 H -0.295 1.295 5 H -0.298 1.298 6 H -0.268 1.268 7 C -0.292 4.292 8 H 0.073 0.927 9 N -0.597 5.597 10 C 0.135 3.865 11 C -0.153 4.153 12 C 0.109 3.891 13 N -0.482 5.482 14 C 0.131 3.869 15 N -0.377 5.377 16 N -0.308 5.308 17 C 0.207 3.793 18 C 0.249 3.751 19 H 0.246 0.754 20 H 0.054 0.946 21 H 0.056 0.944 22 H 0.027 0.973 23 H 0.119 0.881 24 H 0.103 0.897 25 H 0.132 0.868 26 H 0.251 0.749 27 H 0.076 0.924 28 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.069 -13.436 0.688 13.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.240 4.240 3 Si 0.783 3.217 4 H -0.222 1.222 5 H -0.225 1.225 6 H -0.192 1.192 7 C -0.422 4.422 8 H 0.090 0.910 9 N -0.319 5.319 10 C 0.009 3.991 11 C -0.193 4.193 12 C -0.012 4.012 13 N -0.175 5.175 14 C -0.157 4.157 15 N -0.217 5.217 16 N -0.145 5.145 17 C -0.065 4.065 18 C 0.120 3.880 19 H 0.055 0.945 20 H 0.072 0.928 21 H 0.075 0.925 22 H 0.046 0.954 23 H 0.137 0.863 24 H 0.122 0.878 25 H 0.150 0.850 26 H 0.267 0.733 27 H 0.094 0.906 28 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.090 -12.101 0.688 12.170 hybrid contribution 0.927 0.372 -0.557 1.143 sum 2.016 -11.729 0.131 11.902 Atomic orbital electron populations 1.70414 1.05251 1.25496 1.51389 1.25753 0.95971 1.01086 1.01218 0.85516 0.78421 0.80852 0.76921 1.22236 1.22459 1.19233 1.19367 0.94843 0.86472 1.41490 0.90954 1.44210 1.31517 1.02367 1.53803 1.20647 0.95912 0.85762 0.96766 1.22342 0.96921 1.01348 0.98685 1.22496 0.88592 0.86152 1.03931 1.46705 1.17674 1.15007 1.38107 1.26763 0.87300 0.99312 1.02368 1.74360 1.26079 1.05046 1.16175 1.74014 1.02587 1.24094 1.13763 1.26145 0.98996 0.82120 0.99251 1.19513 0.79177 1.00830 0.88482 0.94455 0.92765 0.92550 0.95382 0.86306 0.87849 0.84955 0.73279 0.90574 0.91224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -53.08 8.91 21.65 0.19 -52.89 15 2 C -0.04 -2.29 4.82 84.86 0.41 -1.88 15 3 Si 0.95 45.53 29.60 68.60 2.03 47.56 15 4 H -0.29 -14.20 7.11 99.48 0.71 -13.50 15 5 H -0.30 -14.56 7.11 99.48 0.71 -13.86 15 6 H -0.27 -12.06 7.11 99.48 0.71 -11.35 15 7 C -0.29 -15.50 9.53 84.03 0.80 -14.70 15 8 H 0.07 3.75 7.78 -2.91 -0.02 3.73 15 9 N -0.60 -27.68 2.73 -707.97 -1.93 -29.61 15 10 C 0.13 4.65 5.75 86.15 0.49 5.15 15 11 C -0.15 -4.30 5.87 30.34 0.18 -4.12 15 12 C 0.11 2.68 6.43 86.51 0.56 3.23 15 13 N -0.48 -17.78 2.74 -516.64 -1.41 -19.20 15 14 C 0.13 4.83 12.83 180.27 2.31 7.14 15 15 N -0.38 -18.36 12.24 -60.32 -0.74 -19.09 15 16 N -0.31 -16.70 10.83 -49.90 -0.54 -17.24 15 17 C 0.21 9.81 6.50 138.65 0.90 10.71 15 18 C 0.25 11.52 5.50 85.79 0.47 11.99 15 19 H 0.25 15.11 8.31 -92.70 -0.77 14.33 15 20 H 0.05 1.89 7.74 -2.39 -0.02 1.87 15 21 H 0.06 1.61 8.02 -2.39 -0.02 1.60 15 22 H 0.03 1.03 8.07 -2.39 -0.02 1.01 15 23 H 0.12 2.25 8.14 -2.38 -0.02 2.23 15 24 H 0.10 2.19 7.91 -2.39 -0.02 2.17 15 25 H 0.13 2.03 8.13 -2.39 -0.02 2.01 15 26 H 0.25 5.97 8.06 -2.91 -0.02 5.94 15 27 H 0.08 4.10 6.21 -2.38 -0.01 4.09 15 28 H 0.07 2.67 8.14 -2.39 -0.02 2.65 15 Total: -1.00 -74.89 232.12 4.88 -70.01 By element: Atomic # 1 Polarization: 1.77 SS G_CDS: 1.15 Total: 2.92 kcal Atomic # 6 Polarization: 11.40 SS G_CDS: 6.12 Total: 17.52 kcal Atomic # 7 Polarization: -133.59 SS G_CDS: -4.43 Total: -138.02 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -74.89 4.88 -70.01 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307414059.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.848 kcal (2) G-P(sol) polarization free energy of solvation -74.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds