Wall clock time and date at job start Mon Mar 30 2020 02:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35973 * 117.00448 * 2 1 4 4 C 1.37688 * 120.02424 * 359.97438 * 3 2 1 5 5 C 1.40861 * 119.66903 * 180.02562 * 4 3 2 6 6 C 1.41110 * 120.13611 * 179.97438 * 5 4 3 7 7 H 1.08002 * 120.00366 * 334.43481 * 6 5 4 8 8 C 1.39843 * 120.00091 * 154.43677 * 6 5 4 9 9 N 1.30919 * 119.99998 * 343.14180 * 8 6 5 10 10 Si 1.86800 * 120.00121 * 163.14626 * 8 6 5 11 11 H 1.48499 * 109.47387 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47092 * 119.99902 * 10 8 6 13 13 H 1.48498 * 109.46944 * 239.99628 * 10 8 6 14 14 C 1.40907 * 119.73135 * 359.97438 * 5 4 3 15 15 C 1.36374 * 120.04567 * 0.02562 * 14 5 4 16 16 C 1.39399 * 120.33697 * 359.97438 * 15 14 5 17 17 N 1.39010 * 119.86180 * 180.28422 * 16 15 14 18 18 N 1.36596 * 120.00124 * 359.72221 * 17 16 15 19 19 H 1.08991 * 109.47331 * 180.02562 * 1 2 3 20 20 H 1.08998 * 109.46525 * 299.99930 * 1 2 3 21 21 H 1.09001 * 109.46876 * 59.99268 * 1 2 3 22 22 H 1.07999 * 120.16857 * 359.97438 * 4 3 2 23 23 H 0.96996 * 120.00111 * 180.02562 * 9 8 6 24 24 H 1.07993 * 119.97678 * 179.97438 * 14 5 4 25 25 H 1.08006 * 119.83012 * 179.97438 * 15 14 5 26 26 H 0.97000 * 119.99566 * 179.72578 * 17 16 15 27 27 H 1.00899 * 111.00058 * 56.05099 * 18 17 16 28 28 H 1.00896 * 110.99789 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2115 0.0000 4 6 1.2971 2.3666 -0.0005 5 6 1.9445 3.6176 -0.0011 6 6 1.1862 4.8077 -0.0022 7 1 0.1846 4.8095 -0.4062 8 6 1.7316 5.9848 0.5199 9 7 2.7847 5.9304 1.2957 10 14 0.9574 7.6348 0.1104 11 1 -0.2129 7.4253 -0.7794 12 1 0.5150 8.2985 1.3630 13 1 1.9551 8.4923 -0.5784 14 6 3.3523 3.6760 -0.0005 15 6 4.0834 2.5247 0.0000 16 6 3.4452 1.2854 0.0005 17 7 4.2001 0.1182 0.0071 18 7 5.5643 0.1870 0.0072 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3632 0.5138 0.8900 21 1 -0.3633 0.5140 -0.8899 22 1 0.2184 2.3138 -0.0014 23 1 3.1628 6.7469 1.6581 24 1 3.8527 4.6329 -0.0014 25 1 5.1624 2.5735 0.0000 26 1 3.7581 -0.7452 0.0115 27 1 5.8987 0.7348 0.7858 28 1 5.9729 -0.7355 0.0119 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307452508.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:32 Heat of formation + Delta-G solvation = -9.736350 kcal Electronic energy + Delta-G solvation = -13358.326355 eV Core-core repulsion = 10988.381092 eV Total energy + Delta-G solvation = -2369.945263 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.63907 -38.29688 -37.25761 -34.89449 -31.73612 -30.65859 -28.68341 -28.01849 -25.72122 -22.70314 -22.12163 -19.61599 -18.85014 -17.64915 -17.19111 -16.87309 -16.38616 -15.96634 -15.66695 -14.96013 -14.36543 -14.19237 -13.60740 -13.45332 -12.96665 -12.77857 -12.50091 -12.18687 -12.09725 -11.78079 -11.51415 -11.30682 -10.86504 -9.68762 -9.00073 -8.53751 -7.81437 -6.03375 1.04049 1.16827 1.41837 1.55862 1.57548 2.26930 2.50200 2.76532 2.81766 3.79149 4.37666 4.44922 4.49036 4.53217 4.74886 4.97599 5.07610 5.14507 5.26757 5.38260 5.70942 5.78872 6.08492 6.12443 6.31491 6.58362 6.75678 6.97453 7.04918 7.30541 7.74686 8.45463 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.037484 B = 0.009853 C = 0.007986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.810875 B = 2841.191509 C = 3505.450509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.340 6.340 3 C 0.071 3.929 4 C -0.277 4.277 5 C 0.069 3.931 6 C -0.500 4.500 7 H 0.070 0.930 8 C 0.034 3.966 9 N -0.835 5.835 10 Si 0.980 3.020 11 H -0.260 1.260 12 H -0.268 1.268 13 H -0.266 1.266 14 C -0.171 4.171 15 C -0.132 4.132 16 C 0.086 3.914 17 N -0.608 5.608 18 N -0.603 5.603 19 H 0.124 0.876 20 H 0.044 0.956 21 H 0.047 0.953 22 H 0.110 0.890 23 H 0.284 0.716 24 H 0.103 0.897 25 H 0.117 0.883 26 H 0.401 0.599 27 H 0.325 0.675 28 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.203 -6.825 -0.598 6.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.255 6.255 3 C 0.023 3.977 4 C -0.298 4.298 5 C 0.066 3.934 6 C -0.531 4.531 7 H 0.089 0.911 8 C -0.179 4.179 9 N -0.462 5.462 10 Si 0.801 3.199 11 H -0.184 1.184 12 H -0.193 1.193 13 H -0.191 1.191 14 C -0.191 4.191 15 C -0.154 4.154 16 C -0.013 4.013 17 N -0.339 5.339 18 N -0.229 5.229 19 H 0.142 0.858 20 H 0.063 0.937 21 H 0.065 0.935 22 H 0.128 0.872 23 H 0.095 0.905 24 H 0.121 0.879 25 H 0.135 0.865 26 H 0.239 0.761 27 H 0.139 0.861 28 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.111 -6.461 -1.153 6.564 hybrid contribution -0.574 0.156 0.994 1.158 sum -0.463 -6.305 -0.159 6.324 Atomic orbital electron populations 1.23048 0.77901 1.04375 1.00932 1.85769 1.22230 1.27036 1.90483 1.18206 0.90081 0.84218 1.05220 1.21008 0.98195 0.91847 1.18741 1.17646 0.92567 0.92408 0.90799 1.19610 1.01589 0.94229 1.37684 0.91141 1.26656 0.94935 1.04321 0.92006 1.69929 1.21257 1.31329 1.23718 0.85201 0.79119 0.76572 0.79005 1.18359 1.19250 1.19065 1.20831 0.94145 0.96872 1.07259 1.20019 0.98722 0.90505 1.06163 1.16598 0.86330 0.86787 1.11624 1.42309 0.98858 1.04882 1.87815 1.60107 0.92647 1.21097 1.49007 0.85829 0.93708 0.93459 0.87214 0.90517 0.87880 0.86468 0.76111 0.86121 0.82430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.98 9.81 113.37 1.11 2.09 15 2 O -0.34 -13.26 9.72 -93.24 -0.91 -14.17 15 3 C 0.07 3.31 6.70 22.59 0.15 3.46 15 4 C -0.28 -14.04 8.77 22.78 0.20 -13.84 15 5 C 0.07 3.87 5.57 -21.28 -0.12 3.75 15 6 C -0.50 -27.88 9.03 23.36 0.21 -27.67 15 7 H 0.07 3.80 7.90 -2.91 -0.02 3.77 15 8 C 0.03 1.76 5.14 85.22 0.44 2.20 15 9 N -0.83 -45.05 10.96 21.81 0.24 -44.82 15 10 Si 0.98 39.47 29.59 68.60 2.03 41.50 15 11 H -0.26 -10.25 7.11 99.48 0.71 -9.54 15 12 H -0.27 -10.30 7.11 99.48 0.71 -9.59 15 13 H -0.27 -10.31 7.11 99.48 0.71 -9.60 15 14 C -0.17 -9.35 8.62 22.49 0.19 -9.16 15 15 C -0.13 -6.42 9.27 22.11 0.21 -6.21 15 16 C 0.09 3.92 6.73 38.73 0.26 4.18 15 17 N -0.61 -22.29 6.62 -50.76 -0.34 -22.63 15 18 N -0.60 -18.13 9.58 37.02 0.35 -17.78 15 19 H 0.12 2.68 8.14 -2.39 -0.02 2.66 15 20 H 0.04 1.38 7.66 -2.39 -0.02 1.36 15 21 H 0.05 1.43 7.66 -2.39 -0.02 1.42 15 22 H 0.11 5.18 6.28 -2.91 -0.02 5.16 15 23 H 0.28 13.86 8.30 -92.71 -0.77 13.09 15 24 H 0.10 5.88 6.18 -2.91 -0.02 5.87 15 25 H 0.12 5.21 6.99 -2.91 -0.02 5.19 15 26 H 0.40 13.33 8.16 -215.50 -1.76 11.58 15 27 H 0.32 9.53 8.40 -210.56 -1.77 7.76 15 28 H 0.36 7.90 9.21 -210.56 -1.94 5.96 15 Total: -1.00 -63.79 242.31 -0.22 -64.00 By element: Atomic # 1 Polarization: 39.34 SS G_CDS: -4.25 Total: 35.09 kcal Atomic # 6 Polarization: -43.85 SS G_CDS: 2.65 Total: -41.20 kcal Atomic # 7 Polarization: -85.48 SS G_CDS: 0.26 Total: -85.22 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: -0.91 Total: -14.17 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 2.03 Total: 41.50 kcal Total: -63.79 -0.22 -64.00 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307452508.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.268 kcal (2) G-P(sol) polarization free energy of solvation -63.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds