Wall clock time and date at job start Mon Mar 30 2020 02:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13591 * 1 3 3 N 1.35503 * 179.97438 * 2 1 4 4 C 1.32862 * 120.00268 * 243.27748 * 3 2 1 5 5 C 1.40391 * 120.00505 * 172.44536 * 4 3 2 6 6 H 1.08001 * 120.00352 * 187.06355 * 5 4 3 7 7 C 1.40539 * 120.00025 * 7.06799 * 5 4 3 8 8 N 1.30453 * 120.00257 * 193.30033 * 7 5 4 9 9 Si 1.86805 * 119.99698 * 13.29179 * 7 5 4 10 10 H 1.48500 * 109.47155 * 272.98875 * 9 7 5 11 11 H 1.48495 * 109.46965 * 32.99207 * 9 7 5 12 12 H 1.48504 * 109.46766 * 152.98646 * 9 7 5 13 13 N 1.37972 * 119.99737 * 352.43985 * 4 3 2 14 14 C 1.47078 * 120.88128 * 327.91835 * 13 4 3 15 15 C 1.52783 * 108.76142 * 231.11545 * 14 13 4 16 16 N 1.46896 * 109.42760 * 306.42524 * 15 14 13 17 17 C 1.46896 * 111.26746 * 62.96452 * 16 15 14 18 18 C 1.47077 * 120.87898 * 148.19122 * 13 4 3 19 19 H 0.96998 * 119.99792 * 179.97438 * 8 7 5 20 20 H 1.08999 * 109.62774 * 350.89007 * 14 13 4 21 21 H 1.09000 * 109.62818 * 111.46937 * 14 13 4 22 22 H 1.09000 * 109.56453 * 186.36800 * 15 14 13 23 23 H 1.09001 * 109.36035 * 66.35999 * 15 14 13 24 24 H 1.00903 * 111.00079 * 187.11084 * 16 15 14 25 25 H 1.09004 * 109.49415 * 176.93247 * 17 16 15 26 26 H 1.09002 * 109.51480 * 56.87325 * 17 16 15 27 27 H 1.09005 * 109.62834 * 248.53279 * 18 13 4 28 28 H 1.09006 * 109.63327 * 9.10792 * 18 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 7 2.4909 0.0006 0.0000 4 6 3.1551 0.5183 1.0277 5 6 4.5499 0.3785 1.1043 6 1 5.0767 0.6973 1.9916 7 6 5.2608 -0.1761 0.0264 8 7 6.5016 -0.5464 0.1848 9 14 4.4289 -0.3833 -1.6333 10 1 3.7183 -1.6867 -1.6715 11 1 3.4544 0.7180 -1.8394 12 1 5.4527 -0.3459 -2.7083 13 7 2.4739 1.1934 2.0196 14 6 1.2552 1.9575 1.7127 15 6 1.3997 3.3651 2.2888 16 7 1.7352 3.2768 3.7162 17 6 3.0315 2.6162 3.9190 18 6 2.9506 1.1729 3.4109 19 1 6.9921 -0.9295 -0.5592 20 1 1.1227 2.0170 0.6325 21 1 0.3924 1.4673 2.1638 22 1 0.4615 3.9068 2.1686 23 1 2.1941 3.8921 1.7604 24 1 1.7227 4.1888 4.1478 25 1 3.2768 2.6148 4.9811 26 1 3.8038 3.1531 3.3681 27 1 2.2539 0.6058 4.0283 28 1 3.9384 0.7139 3.4528 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308028700.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:19 Heat of formation + Delta-G solvation = 35.295880 kcal Electronic energy + Delta-G solvation = -13767.845016 eV Core-core repulsion = 11432.145248 eV Total energy + Delta-G solvation = -2335.699768 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.41947 -37.72869 -36.38129 -35.04598 -33.09703 -32.18397 -29.50924 -26.87332 -24.50415 -22.96355 -20.91415 -20.28010 -18.76225 -17.10467 -16.71599 -16.20542 -15.74668 -15.65750 -15.24768 -14.84550 -14.64691 -14.25024 -14.04220 -13.49509 -13.30224 -13.04784 -12.69943 -12.46578 -12.29529 -12.12263 -11.80925 -11.42650 -10.95465 -9.91192 -9.57217 -9.05631 -8.78409 -7.23014 0.87393 1.54110 1.66580 1.78612 2.21465 2.35458 2.55549 2.67342 3.18906 3.34813 3.84886 4.01436 4.05848 4.20742 4.28570 4.41176 4.53627 4.71612 4.81257 4.83444 4.99743 5.09907 5.66857 5.78059 5.92532 6.01221 6.25575 6.49370 6.77325 7.01358 7.89475 8.09478 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.032440 B = 0.013825 C = 0.010587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.916311 B = 2024.900825 C = 2644.174709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C 0.399 3.601 3 N -0.665 5.665 4 C 0.499 3.501 5 C -0.414 4.414 6 H 0.110 0.890 7 C 0.085 3.915 8 N -0.784 5.784 9 Si 1.031 2.969 10 H -0.294 1.294 11 H -0.274 1.274 12 H -0.312 1.312 13 N -0.664 5.664 14 C 0.134 3.866 15 C 0.056 3.944 16 N -0.689 5.689 17 C 0.051 3.949 18 C 0.127 3.873 19 H 0.308 0.692 20 H 0.053 0.947 21 H 0.042 0.958 22 H 0.099 0.901 23 H 0.032 0.968 24 H 0.358 0.642 25 H 0.110 0.890 26 H 0.032 0.968 27 H 0.055 0.945 28 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.420 7.452 6.433 9.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.279 5.279 2 C -0.001 4.001 3 N -0.422 5.422 4 C 0.268 3.732 5 C -0.451 4.451 6 H 0.128 0.872 7 C -0.143 4.143 8 N -0.407 5.407 9 Si 0.865 3.135 10 H -0.222 1.222 11 H -0.200 1.200 12 H -0.244 1.244 13 N -0.385 5.385 14 C 0.010 3.990 15 C -0.074 4.074 16 N -0.322 5.322 17 C -0.080 4.080 18 C 0.003 3.997 19 H 0.119 0.881 20 H 0.071 0.929 21 H 0.061 0.939 22 H 0.117 0.883 23 H 0.050 0.950 24 H 0.178 0.822 25 H 0.128 0.872 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.169 6.514 5.952 8.901 hybrid contribution 0.488 0.538 -0.600 0.942 sum -0.681 7.052 5.352 8.880 Atomic orbital electron populations 1.81466 1.09253 1.21269 1.15879 1.26451 0.90911 0.90917 0.91818 1.68336 0.95741 1.48169 1.29990 1.19344 0.91288 0.82540 0.80036 1.19293 0.87770 1.33958 1.04100 0.87246 1.26581 0.94470 0.89188 1.04082 1.69404 1.10537 1.24532 1.36223 0.84039 0.74507 0.80262 0.74653 1.22196 1.20016 1.24374 1.47417 1.28149 1.55091 1.07889 1.21421 0.86750 0.92234 0.98594 1.22111 1.01393 0.94883 0.89038 1.60207 1.31978 1.27188 1.12847 1.22310 0.89556 0.93982 1.02107 1.21713 1.00122 0.97275 0.80559 0.88082 0.92867 0.93943 0.88260 0.95008 0.82172 0.87194 0.94934 0.92681 0.89202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.58 -29.53 17.84 17.21 0.31 -29.22 15 2 C 0.40 20.65 12.71 184.39 2.34 22.99 15 3 N -0.66 -34.29 5.05 -92.76 -0.47 -34.76 15 4 C 0.50 23.57 6.67 133.58 0.89 24.46 15 5 C -0.41 -19.45 9.21 23.36 0.22 -19.24 15 6 H 0.11 4.97 6.55 -2.91 -0.02 4.95 15 7 C 0.08 4.04 5.53 85.46 0.47 4.51 15 8 N -0.78 -36.45 13.91 21.92 0.30 -36.14 15 9 Si 1.03 47.54 25.53 68.60 1.75 49.29 15 10 H -0.29 -14.56 7.11 99.48 0.71 -13.85 15 11 H -0.27 -13.57 6.48 99.48 0.65 -12.92 15 12 H -0.31 -13.33 7.11 99.48 0.71 -12.62 15 13 N -0.66 -27.03 2.96 -700.23 -2.07 -29.11 15 14 C 0.13 5.18 4.72 86.20 0.41 5.59 15 15 C 0.06 1.64 6.68 86.23 0.58 2.21 15 16 N -0.69 -17.26 6.82 -513.86 -3.50 -20.76 15 17 C 0.05 1.29 6.69 86.38 0.58 1.87 15 18 C 0.13 4.17 6.49 86.35 0.56 4.73 15 19 H 0.31 12.95 8.29 -92.71 -0.77 12.19 15 20 H 0.05 2.32 5.82 -2.39 -0.01 2.31 15 21 H 0.04 1.75 7.98 -2.39 -0.02 1.73 15 22 H 0.10 2.45 8.14 -2.39 -0.02 2.43 15 23 H 0.03 0.95 8.14 -2.39 -0.02 0.93 15 24 H 0.36 6.71 8.90 -89.69 -0.80 5.91 15 25 H 0.11 2.13 8.14 -2.38 -0.02 2.11 15 26 H 0.03 0.88 8.14 -2.39 -0.02 0.86 15 27 H 0.05 1.79 8.14 -2.38 -0.02 1.77 15 28 H 0.09 2.96 6.11 -2.38 -0.01 2.95 15 Total: -1.00 -57.51 235.89 2.69 -54.82 By element: Atomic # 1 Polarization: -1.58 SS G_CDS: 0.33 Total: -1.25 kcal Atomic # 6 Polarization: 41.08 SS G_CDS: 6.04 Total: 47.12 kcal Atomic # 7 Polarization: -144.56 SS G_CDS: -5.44 Total: -149.99 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 1.75 Total: 49.29 kcal Total: -57.51 2.69 -54.82 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308028700.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.119 kcal (2) G-P(sol) polarization free energy of solvation -57.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds