Wall clock time and date at job start Mon Mar 30 2020 02:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31517 * 119.99524 * 179.97438 * 6 4 2 8 8 Si 1.86794 * 120.00267 * 359.97438 * 6 4 2 9 9 H 1.48506 * 109.46589 * 89.99875 * 8 6 4 10 10 H 1.48490 * 109.47303 * 209.99928 * 8 6 4 11 11 H 1.48497 * 109.46869 * 330.00523 * 8 6 4 12 12 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 13 13 N 1.40101 * 120.00104 * 89.99778 * 12 2 1 14 14 C 1.30004 * 120.00069 * 180.02562 * 13 12 2 15 15 C 1.46712 * 119.99932 * 179.97438 * 14 13 12 16 16 C 1.36412 * 125.97318 * 179.71340 * 15 14 13 17 17 C 1.40803 * 106.71574 * 179.85602 * 16 15 14 18 18 C 1.34804 * 107.08979 * 0.40467 * 17 16 15 19 19 O 1.34360 * 108.74153 * 359.75118 * 18 17 16 20 20 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 21 21 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 23 23 H 0.97001 * 119.99599 * 179.97438 * 7 6 4 24 24 H 0.96995 * 120.00184 * 270.00301 * 12 2 1 25 25 H 1.07999 * 120.00304 * 359.97438 * 14 13 12 26 26 H 1.08003 * 126.63907 * 359.95766 * 16 15 14 27 27 H 1.08003 * 126.45756 * 180.15306 * 17 16 15 28 28 H 1.07996 * 125.62810 * 179.78281 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1374 -0.8597 3.5564 8 14 0.6259 1.2797 2.6542 9 1 -0.8020 0.8742 2.6994 10 1 0.9772 1.9952 3.9071 11 1 0.8490 2.1772 1.4923 12 7 2.0184 -0.6906 -1.1962 13 7 2.2519 0.0300 -2.3748 14 6 2.6848 -0.5829 -3.4365 15 6 2.9287 0.1717 -4.6708 16 6 3.3857 -0.3440 -5.8481 17 6 3.4673 0.7293 -6.7558 18 6 3.0707 1.8364 -6.0969 19 8 2.7461 1.4966 -4.8382 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 -0.8900 23 1 1.9033 -0.5281 4.4375 24 1 2.1800 -1.6466 -1.1723 25 1 2.8648 -1.6474 -3.4098 26 1 3.6348 -1.3761 -6.0462 27 1 3.7911 0.6763 -7.7848 28 1 3.0214 2.8320 -6.5124 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308137603.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:57 Heat of formation + Delta-G solvation = 61.463627 kcal Electronic energy + Delta-G solvation = -12735.556206 eV Core-core repulsion = 10368.698405 eV Total energy + Delta-G solvation = -2366.857800 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.22358 -36.72642 -34.22582 -32.83106 -31.86211 -29.93656 -27.39726 -25.17043 -22.86069 -21.55308 -20.43089 -19.93121 -17.61135 -16.74111 -15.86567 -15.78565 -15.45278 -14.49451 -13.49112 -13.24213 -12.75999 -12.66186 -12.53761 -12.38920 -12.23149 -11.61461 -11.10289 -10.79709 -10.26906 -9.86367 -9.80716 -9.62676 -9.26101 -8.82031 -8.59320 -7.01050 -6.23775 -4.26632 1.44655 2.52481 3.11875 3.20125 3.31829 3.33901 3.35493 3.56106 4.27536 4.96269 5.10370 5.11887 5.24562 5.61623 5.88543 5.99917 6.14609 6.26140 6.37139 6.49047 6.52714 6.62215 6.85332 7.21197 7.36715 7.47316 7.86979 8.34717 8.75693 9.01956 9.35907 10.88609 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.065373 B = 0.006124 C = 0.005857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.208511 B = 4571.282871 C = 4779.253748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.269 3.731 3 H 0.044 0.956 4 C -0.535 4.535 5 H 0.079 0.921 6 C 0.078 3.922 7 N -0.892 5.892 8 Si 0.889 3.111 9 H -0.276 1.276 10 H -0.293 1.293 11 H -0.263 1.263 12 N -0.610 5.610 13 N -0.184 5.184 14 C 0.015 3.985 15 C 0.074 3.926 16 C -0.210 4.210 17 C -0.211 4.211 18 C -0.051 4.051 19 O -0.164 6.164 20 H 0.048 0.952 21 H 0.053 0.947 22 H 0.034 0.966 23 H 0.268 0.732 24 H 0.378 0.622 25 H 0.133 0.867 26 H 0.149 0.851 27 H 0.146 0.854 28 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.295 2.374 -16.148 16.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.165 3.835 3 H 0.062 0.938 4 C -0.574 4.574 5 H 0.097 0.903 6 C -0.125 4.125 7 N -0.529 5.529 8 Si 0.718 3.282 9 H -0.202 1.202 10 H -0.221 1.221 11 H -0.188 1.188 12 N -0.347 5.347 13 N 0.001 4.999 14 C -0.193 4.193 15 C 0.022 3.978 16 C -0.233 4.233 17 C -0.231 4.231 18 C -0.121 4.121 19 O -0.058 6.058 20 H 0.066 0.934 21 H 0.072 0.928 22 H 0.053 0.947 23 H 0.078 0.922 24 H 0.215 0.785 25 H 0.150 0.850 26 H 0.166 0.834 27 H 0.164 0.836 28 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -0.151 3.544 -15.119 15.530 hybrid contribution -0.241 -0.585 -0.143 0.649 sum -0.392 2.958 -15.262 15.551 Atomic orbital electron populations 1.22587 0.99719 1.01007 0.99075 1.18936 0.89389 0.94314 0.80831 0.93846 1.21040 1.33313 1.14651 0.88420 0.90261 1.24820 0.95535 0.96802 0.95378 1.69867 1.44846 1.40092 0.98065 0.86831 0.80500 0.83411 0.77435 1.20247 1.22067 1.18789 1.48661 1.71714 1.08093 1.06203 1.74153 1.03774 1.27955 0.93973 1.22511 1.10892 0.96239 0.89612 1.20145 1.02844 0.80535 0.94319 1.21676 1.08698 1.00595 0.92377 1.21646 1.07678 0.92663 1.01086 1.24068 1.05085 1.00417 0.82487 1.84238 1.66795 1.24556 1.30210 0.93389 0.92798 0.94664 0.92196 0.78480 0.85022 0.83370 0.83645 0.78463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.66 9.00 37.16 0.33 -3.33 15 2 C 0.27 6.48 2.82 -69.08 -0.20 6.28 15 3 H 0.04 1.11 7.20 -51.93 -0.37 0.74 15 4 C -0.54 -14.68 9.32 -34.44 -0.32 -15.00 15 5 H 0.08 2.32 8.03 -52.49 -0.42 1.90 15 6 C 0.08 2.20 5.45 -17.82 -0.10 2.11 15 7 N -0.89 -26.49 13.96 55.43 0.77 -25.72 15 8 Si 0.89 21.47 24.37 -169.99 -4.14 17.32 15 9 H -0.28 -6.44 6.87 56.52 0.39 -6.06 15 10 H -0.29 -7.06 7.11 56.52 0.40 -6.66 15 11 H -0.26 -6.19 6.53 56.52 0.37 -5.82 15 12 N -0.61 -12.97 6.10 -5.88 -0.04 -13.01 15 13 N -0.18 -3.71 11.48 32.01 0.37 -3.34 15 14 C 0.01 0.25 10.95 -14.90 -0.16 0.08 15 15 C 0.07 1.16 7.14 -36.82 -0.26 0.90 15 16 C -0.21 -2.69 10.86 -39.27 -0.43 -3.12 15 17 C -0.21 -2.40 10.88 -39.83 -0.43 -2.84 15 18 C -0.05 -0.61 12.08 29.51 0.36 -0.25 15 19 O -0.16 -2.63 10.67 4.22 0.04 -2.59 15 20 H 0.05 1.08 3.27 -51.93 -0.17 0.91 15 21 H 0.05 1.14 8.14 -51.93 -0.42 0.72 15 22 H 0.03 0.72 8.14 -51.93 -0.42 0.30 15 23 H 0.27 7.45 8.31 -40.82 -0.34 7.11 15 24 H 0.38 7.38 8.58 -182.60 -1.57 5.81 15 25 H 0.13 1.81 8.03 -52.49 -0.42 1.39 15 26 H 0.15 1.53 8.06 -52.48 -0.42 1.11 15 27 H 0.15 1.22 8.06 -52.48 -0.42 0.80 15 28 H 0.20 1.54 8.06 -52.49 -0.42 1.12 15 LS Contribution 249.46 15.07 3.76 3.76 Total: -1.00 -30.69 249.46 -4.69 -35.38 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -4.25 Total: 3.36 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: -1.21 Total: -15.17 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: 1.11 Total: -42.07 kcal Atomic # 8 Polarization: -2.63 SS G_CDS: 0.04 Total: -2.59 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.14 Total: 17.32 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -30.69 -4.69 -35.38 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308137603.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.845 kcal (2) G-P(sol) polarization free energy of solvation -30.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds