Wall clock time and date at job start Mon Mar 30 2020 02:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 2 8 8 Si 1.86789 * 120.00458 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47356 * 89.99481 * 8 6 4 10 10 H 1.48501 * 109.47162 * 209.99853 * 8 6 4 11 11 H 1.48503 * 109.47180 * 329.99546 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 N 1.40108 * 119.99907 * 89.99853 * 12 2 1 14 14 C 1.29997 * 120.00076 * 179.97438 * 13 12 2 15 15 C 1.46789 * 119.99946 * 180.02562 * 14 13 12 16 16 N 1.31797 * 125.88380 * 0.02816 * 15 14 13 17 17 C 1.33757 * 109.25364 * 180.02562 * 16 15 14 18 18 C 1.34874 * 108.47698 * 359.97438 * 17 16 15 19 19 N 1.36708 * 125.88287 * 179.72510 * 15 14 13 20 20 H 0.96995 * 126.52860 * 359.95779 * 19 15 14 21 21 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 22 22 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 23 23 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 24 24 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 25 25 H 0.97002 * 120.00298 * 270.00357 * 12 2 1 26 26 H 1.08003 * 120.00108 * 0.02562 * 14 13 12 27 27 H 1.07992 * 125.76441 * 180.02562 * 17 16 15 28 28 H 1.07997 * 126.45887 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1372 -0.8596 3.5565 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8727 2.6997 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1765 1.4920 12 7 2.0183 -0.6907 -1.1961 13 7 2.2518 0.0298 -2.3748 14 6 2.6856 -0.5829 -3.4361 15 6 2.9308 0.1721 -4.6708 16 7 2.7518 1.4678 -4.8325 17 6 3.0757 1.8048 -6.0857 18 6 3.4720 0.6931 -6.7385 19 7 3.3896 -0.3467 -5.8495 20 1 3.6125 -1.2744 -6.0240 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.9026 -0.5284 4.4375 25 1 2.1800 -1.6468 -1.1721 26 1 2.8657 -1.6475 -3.4093 27 1 3.0287 2.7993 -6.5040 28 1 3.7967 0.6340 -7.7668 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308160581.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:21 Heat of formation + Delta-G solvation = 107.480990 kcal Electronic energy + Delta-G solvation = -12718.717123 eV Core-core repulsion = 10386.147536 eV Total energy + Delta-G solvation = -2332.569587 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.61535 -36.66316 -34.13788 -32.32695 -31.80967 -29.82086 -27.44516 -25.14113 -23.12897 -21.44778 -20.49557 -19.88388 -17.93115 -16.96123 -15.84412 -15.37460 -14.83994 -14.21706 -13.77266 -13.55788 -13.16065 -13.00964 -12.44462 -12.19758 -11.60257 -11.01522 -10.75684 -10.21491 -9.93283 -9.84484 -9.73149 -9.56719 -9.21117 -8.77413 -8.55197 -7.03298 -6.20585 -4.23235 1.67248 2.78754 2.90405 3.24157 3.36090 3.39144 3.71099 3.78444 4.31558 4.65744 5.12538 5.14082 5.44852 5.50959 5.81589 6.06922 6.29434 6.37802 6.54414 6.58250 6.83786 6.94592 7.30839 7.40118 7.49730 7.90707 8.24953 8.38337 8.78659 9.08507 9.39487 10.91771 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.066206 B = 0.006097 C = 0.005837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.818324 B = 4591.178845 C = 4795.492758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.270 3.730 3 H 0.046 0.954 4 C -0.534 4.534 5 H 0.079 0.921 6 C 0.078 3.922 7 N -0.893 5.893 8 Si 0.888 3.112 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.261 1.261 12 N -0.609 5.609 13 N -0.151 5.151 14 C 0.009 3.991 15 C 0.283 3.717 16 N -0.465 5.465 17 C -0.028 4.028 18 C -0.062 4.062 19 N -0.569 5.569 20 H 0.418 0.582 21 H 0.036 0.964 22 H 0.047 0.953 23 H 0.052 0.948 24 H 0.268 0.732 25 H 0.376 0.624 26 H 0.115 0.885 27 H 0.168 0.832 28 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.073 -0.072 -17.285 17.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.166 3.834 3 H 0.064 0.936 4 C -0.573 4.573 5 H 0.097 0.903 6 C -0.125 4.125 7 N -0.530 5.530 8 Si 0.718 3.282 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.186 1.186 12 N -0.347 5.347 13 N 0.033 4.967 14 C -0.201 4.201 15 C 0.021 3.979 16 N -0.186 5.186 17 C -0.178 4.178 18 C -0.197 4.197 19 N -0.174 5.174 20 H 0.256 0.744 21 H 0.055 0.945 22 H 0.066 0.934 23 H 0.071 0.929 24 H 0.078 0.922 25 H 0.213 0.787 26 H 0.132 0.868 27 H 0.185 0.815 28 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 0.461 1.485 -15.936 16.011 hybrid contribution 0.121 -1.527 -0.761 1.710 sum 0.582 -0.042 -16.697 16.707 Atomic orbital electron populations 1.22582 0.99712 1.00924 0.99167 1.18941 0.89390 0.94429 0.80663 0.93626 1.21044 1.33262 1.14587 0.88447 0.90322 1.24816 0.95544 0.96812 0.95371 1.69869 1.44931 1.40148 0.98054 0.86836 0.80448 0.83442 0.77497 1.20288 1.22125 1.18604 1.48739 1.71676 1.08029 1.06263 1.74146 1.02195 1.27007 0.93378 1.21860 1.12552 0.95581 0.90080 1.20733 1.01690 0.89023 0.86470 1.70739 1.20217 1.09888 1.17772 1.22401 1.05345 0.98870 0.91141 1.22722 1.11775 0.88182 0.96977 1.43430 1.52195 1.11100 1.10722 0.74401 0.94504 0.93424 0.92898 0.92236 0.78713 0.86797 0.81500 0.80754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.69 9.00 37.16 0.33 -3.36 15 2 C 0.27 6.53 2.82 -69.08 -0.20 6.33 15 3 H 0.05 1.18 7.20 -51.93 -0.37 0.81 15 4 C -0.53 -14.69 9.32 -34.44 -0.32 -15.01 15 5 H 0.08 2.30 8.03 -52.49 -0.42 1.88 15 6 C 0.08 2.21 5.45 -17.82 -0.10 2.11 15 7 N -0.89 -26.63 13.96 55.43 0.77 -25.85 15 8 Si 0.89 21.66 24.37 -169.99 -4.14 17.52 15 9 H -0.28 -6.51 6.87 56.52 0.39 -6.12 15 10 H -0.29 -7.15 7.11 56.52 0.40 -6.74 15 11 H -0.26 -6.23 6.53 56.52 0.37 -5.86 15 12 N -0.61 -12.97 6.10 -5.88 -0.04 -13.01 15 13 N -0.15 -3.08 11.45 32.03 0.37 -2.71 15 14 C 0.01 0.15 11.05 -14.87 -0.16 -0.01 15 15 C 0.28 4.41 8.00 -154.61 -1.24 3.18 15 16 N -0.46 -8.18 11.23 -11.41 -0.13 -8.30 15 17 C -0.03 -0.37 11.83 -17.91 -0.21 -0.58 15 18 C -0.06 -0.63 12.03 -16.41 -0.20 -0.83 15 19 N -0.57 -6.19 6.24 -10.69 -0.07 -6.26 15 20 H 0.42 2.95 8.96 -40.82 -0.37 2.58 15 21 H 0.04 0.76 8.14 -51.93 -0.42 0.34 15 22 H 0.05 1.09 3.27 -51.93 -0.17 0.92 15 23 H 0.05 1.13 8.14 -51.93 -0.42 0.70 15 24 H 0.27 7.47 8.31 -40.82 -0.34 7.13 15 25 H 0.38 7.28 8.58 -182.59 -1.57 5.72 15 26 H 0.11 1.49 8.03 -52.48 -0.42 1.07 15 27 H 0.17 1.75 8.06 -52.49 -0.42 1.32 15 28 H 0.18 1.05 8.06 -52.49 -0.42 0.63 15 LS Contribution 248.14 15.07 3.74 3.74 Total: -1.00 -32.91 248.14 -5.77 -38.68 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -4.19 Total: 4.37 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: -2.09 Total: -8.17 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: 0.91 Total: -56.14 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.14 Total: 17.52 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -32.91 -5.77 -38.68 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308160581.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.163 kcal (2) G-P(sol) polarization free energy of solvation -32.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds