Wall clock time and date at job start Mon Mar 30 2020 02:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 119.99350 * 179.97438 * 6 4 2 8 8 Si 1.86789 * 120.00458 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47356 * 89.99481 * 8 6 4 10 10 H 1.48501 * 109.47162 * 209.99853 * 8 6 4 11 11 H 1.48503 * 109.47180 * 329.99546 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 N 1.40108 * 119.99907 * 89.99853 * 12 2 1 14 14 C 1.29997 * 120.00076 * 179.97438 * 13 12 2 15 15 C 1.46789 * 119.99946 * 180.02562 * 14 13 12 16 16 N 1.31797 * 125.88380 * 0.02816 * 15 14 13 17 17 C 1.33757 * 109.25364 * 180.02562 * 16 15 14 18 18 C 1.34874 * 108.47698 * 359.97438 * 17 16 15 19 19 N 1.36708 * 125.88287 * 179.72510 * 15 14 13 20 20 H 0.96995 * 126.52860 * 359.95779 * 19 15 14 21 21 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 22 22 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 23 23 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 24 24 H 0.97005 * 119.99656 * 180.02562 * 7 6 4 25 25 H 0.97002 * 120.00298 * 270.00357 * 12 2 1 26 26 H 1.08003 * 120.00108 * 0.02562 * 14 13 12 27 27 H 1.07992 * 125.76441 * 180.02562 * 17 16 15 28 28 H 1.07997 * 126.45887 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1372 -0.8596 3.5565 8 14 0.6248 1.2790 2.6541 9 1 -0.8028 0.8727 2.6997 10 1 0.9760 1.9951 3.9068 11 1 0.8471 2.1765 1.4920 12 7 2.0183 -0.6907 -1.1961 13 7 2.2518 0.0298 -2.3748 14 6 2.6856 -0.5829 -3.4361 15 6 2.9308 0.1721 -4.6708 16 7 2.7518 1.4678 -4.8325 17 6 3.0757 1.8048 -6.0857 18 6 3.4720 0.6931 -6.7385 19 7 3.3896 -0.3467 -5.8495 20 1 3.6125 -1.2744 -6.0240 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.9026 -0.5284 4.4375 25 1 2.1800 -1.6468 -1.1721 26 1 2.8657 -1.6475 -3.4093 27 1 3.0287 2.7993 -6.5040 28 1 3.7967 0.6340 -7.7668 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308160581.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:21 Heat of formation + Delta-G solvation = 81.633550 kcal Electronic energy + Delta-G solvation = -12719.837952 eV Core-core repulsion = 10386.147536 eV Total energy + Delta-G solvation = -2333.690416 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.62954 -38.22847 -35.90300 -33.75518 -33.36093 -31.16925 -28.81273 -27.16389 -24.47426 -22.45517 -22.23753 -21.07629 -19.29283 -18.55090 -17.43911 -17.19527 -15.89312 -15.72157 -15.09269 -14.95644 -14.63807 -14.27168 -14.08350 -14.06707 -13.36310 -12.72913 -12.70946 -12.08874 -11.52053 -11.33696 -11.02021 -10.99276 -10.88194 -10.83198 -9.77864 -8.44881 -8.36847 -6.43985 0.52609 1.30961 1.38421 1.48590 1.72394 1.74352 2.28403 2.55159 2.58407 2.98896 3.56689 4.26287 4.41433 4.47532 4.54917 4.65561 4.73059 4.76353 4.93419 5.12827 5.26380 5.49788 5.53973 5.88880 6.05091 6.43716 6.56206 6.62519 7.20714 7.23290 7.67079 8.78510 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.066206 B = 0.006097 C = 0.005837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.818324 B = 4591.178845 C = 4795.492758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.279 3.721 3 H 0.024 0.976 4 C -0.536 4.536 5 H 0.047 0.953 6 C 0.026 3.974 7 N -0.938 5.938 8 Si 0.946 3.054 9 H -0.258 1.258 10 H -0.292 1.292 11 H -0.255 1.255 12 N -0.628 5.628 13 N -0.211 5.211 14 C 0.053 3.947 15 C 0.237 3.763 16 N -0.510 5.510 17 C -0.066 4.066 18 C -0.016 4.016 19 N -0.545 5.545 20 H 0.439 0.561 21 H 0.049 0.951 22 H 0.043 0.957 23 H 0.058 0.942 24 H 0.271 0.729 25 H 0.379 0.621 26 H 0.148 0.852 27 H 0.186 0.814 28 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.930 0.145 -20.386 20.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.174 3.826 3 H 0.042 0.958 4 C -0.575 4.575 5 H 0.065 0.935 6 C -0.173 4.173 7 N -0.577 5.577 8 Si 0.773 3.227 9 H -0.184 1.184 10 H -0.220 1.220 11 H -0.179 1.179 12 N -0.366 5.366 13 N -0.024 5.024 14 C -0.158 4.158 15 C -0.025 4.025 16 N -0.233 5.233 17 C -0.216 4.216 18 C -0.152 4.152 19 N -0.152 5.152 20 H 0.281 0.719 21 H 0.068 0.932 22 H 0.062 0.938 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.217 0.783 26 H 0.165 0.835 27 H 0.203 0.797 28 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 0.316 1.662 -19.046 19.121 hybrid contribution 0.347 -1.632 -0.174 1.678 sum 0.663 0.030 -19.219 19.231 Atomic orbital electron populations 1.22456 0.98187 1.01433 0.99505 1.18526 0.90464 0.92859 0.80754 0.95806 1.21285 1.32375 1.13604 0.90240 0.93505 1.25622 0.96935 0.99765 0.95004 1.69992 1.46833 1.42148 0.98713 0.85893 0.79495 0.79869 0.77486 1.18407 1.21960 1.17933 1.48209 1.74257 1.07845 1.06323 1.74163 1.06390 1.27781 0.94045 1.22474 1.06949 0.97225 0.89197 1.20522 1.05227 0.89057 0.87682 1.70611 1.20819 1.11442 1.20432 1.22915 1.07162 1.01099 0.90377 1.23540 1.07045 0.86484 0.98167 1.43391 1.50172 1.12446 1.09213 0.71943 0.93180 0.93836 0.92326 0.91992 0.78270 0.83479 0.79736 0.75521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.95 9.00 71.98 0.65 -6.30 15 2 C 0.28 13.75 2.82 44.25 0.12 13.88 15 3 H 0.02 1.27 7.20 -2.39 -0.02 1.25 15 4 C -0.54 -30.40 9.32 25.60 0.24 -30.17 15 5 H 0.05 2.87 8.03 -2.91 -0.02 2.85 15 6 C 0.03 1.51 5.45 84.66 0.46 1.97 15 7 N -0.94 -57.43 13.96 21.45 0.30 -57.13 15 8 Si 0.95 44.92 24.37 68.60 1.67 46.59 15 9 H -0.26 -11.48 6.87 99.48 0.68 -10.79 15 10 H -0.29 -13.68 7.11 99.48 0.71 -12.97 15 11 H -0.26 -11.77 6.53 99.48 0.65 -11.12 15 12 N -0.63 -27.18 6.10 -172.53 -1.05 -28.23 15 13 N -0.21 -8.63 11.45 -52.57 -0.60 -9.23 15 14 C 0.05 1.68 11.05 87.20 0.96 2.65 15 15 C 0.24 6.89 8.00 136.03 1.09 7.98 15 16 N -0.51 -17.31 11.23 -190.01 -2.13 -19.44 15 17 C -0.07 -1.58 11.83 83.63 0.99 -0.59 15 18 C -0.02 -0.24 12.03 83.10 1.00 0.76 15 19 N -0.55 -9.64 6.24 -187.72 -1.17 -10.81 15 20 H 0.44 4.10 8.96 -92.71 -0.83 3.27 15 21 H 0.05 2.05 8.14 -2.39 -0.02 2.03 15 22 H 0.04 1.93 3.27 -2.39 -0.01 1.92 15 23 H 0.06 2.47 8.14 -2.38 -0.02 2.45 15 24 H 0.27 15.47 8.31 -92.70 -0.77 14.70 15 25 H 0.38 15.03 8.58 -213.31 -1.83 13.20 15 26 H 0.15 3.48 8.03 -2.91 -0.02 3.46 15 27 H 0.19 3.42 8.06 -2.91 -0.02 3.39 15 28 H 0.23 1.10 8.06 -2.91 -0.02 1.07 15 Total: -1.00 -74.33 248.14 0.97 -73.36 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -1.55 Total: 14.71 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: 5.51 Total: -9.82 kcal Atomic # 7 Polarization: -120.18 SS G_CDS: -4.66 Total: -124.84 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.67 Total: 46.59 kcal Total: -74.33 0.97 -73.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308160581.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.993 kcal (2) G-P(sol) polarization free energy of solvation -74.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds