Wall clock time and date at job start Mon Mar 30 2020 02:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21314 * 120.00402 * 2 1 4 4 C 1.46677 * 119.99980 * 179.97438 * 2 1 3 5 5 C 1.41546 * 126.46972 * 0.02562 * 4 2 1 6 6 N 1.30375 * 107.98042 * 179.71603 * 5 4 2 7 7 N 1.39913 * 109.00648 * 0.44091 * 6 5 4 8 8 C 1.46496 * 125.70708 * 179.80592 * 7 6 5 9 9 C 1.52998 * 109.47238 * 304.69806 * 8 7 6 10 10 C 1.50706 * 109.47348 * 179.97438 * 9 8 7 11 11 H 1.08000 * 119.99302 * 359.97438 * 10 9 8 12 12 C 1.37871 * 120.00436 * 179.72505 * 10 9 8 13 13 N 1.31515 * 119.99684 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00405 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47050 * 59.99579 * 14 12 10 16 16 H 1.48496 * 109.47289 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.46492 * 299.99554 * 14 12 10 18 18 C 1.34129 * 108.58914 * 359.54911 * 7 6 5 19 19 H 1.09000 * 109.47719 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.47032 * 300.00496 * 1 2 3 21 21 H 1.09004 * 109.47203 * 60.00251 * 1 2 3 22 22 H 1.08000 * 126.01845 * 359.97438 * 5 4 2 23 23 H 1.09000 * 109.47435 * 184.69710 * 8 7 6 24 24 H 1.09002 * 109.46784 * 64.69346 * 8 7 6 25 25 H 1.09001 * 109.47671 * 59.99927 * 9 8 7 26 26 H 1.08998 * 109.47454 * 299.99925 * 9 8 7 27 27 H 0.97004 * 120.00247 * 180.02562 * 13 12 10 28 28 H 1.07995 * 126.31382 * 180.24316 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1136 1.0506 0.0000 4 6 2.2403 -1.2703 0.0006 5 6 1.6752 -2.5680 0.0006 6 7 2.6515 -3.4321 -0.0049 7 7 3.8694 -2.7435 0.0014 8 6 5.1992 -3.3583 0.0021 9 6 5.3145 -4.3231 1.1839 10 6 6.6822 -4.9560 1.1842 11 1 7.3974 -4.6963 0.4178 12 6 7.0221 -5.8625 2.1658 13 7 6.1530 -6.1745 3.1022 14 14 8.7177 -6.6464 2.1666 15 1 9.7525 -5.5877 2.2822 16 1 8.8320 -7.5774 3.3179 17 1 8.9164 -7.3970 0.9008 18 6 3.6160 -1.4264 0.0010 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3633 0.5139 0.8899 21 1 -0.3634 0.5138 -0.8900 22 1 0.6208 -2.8016 0.0007 23 1 5.9586 -2.5815 0.0917 24 1 5.3470 -3.9052 -0.9291 25 1 4.5551 -5.0999 1.0943 26 1 5.1666 -3.7762 2.1151 27 1 6.3922 -6.8121 3.7931 28 1 4.3497 -0.6340 0.0014 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308194941.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:23 Heat of formation + Delta-G solvation = 0.958110 kcal Electronic energy + Delta-G solvation = -12746.044560 eV Core-core repulsion = 10376.563044 eV Total energy + Delta-G solvation = -2369.481516 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.27140 -39.69031 -36.21354 -34.34394 -31.87277 -31.55855 -29.80812 -26.90906 -23.77669 -23.63055 -21.56645 -20.19897 -18.80833 -17.85148 -16.72316 -16.38517 -16.12062 -15.76995 -15.59696 -15.24077 -14.68603 -14.28538 -13.67457 -13.46674 -12.93279 -12.91562 -12.85515 -12.62092 -12.28098 -11.98928 -11.64494 -11.47809 -10.64341 -10.61504 -10.56188 -9.63405 -8.27057 -6.41342 0.37071 1.17852 1.39731 1.43734 1.50092 1.53628 2.27818 2.38110 3.07631 3.28372 3.78472 3.86792 4.14580 4.30571 4.33287 4.54012 4.62338 4.72048 4.79052 4.91827 5.31874 5.32088 5.42009 5.59829 5.66832 5.90065 6.08559 6.65924 6.74914 6.78704 7.29582 8.85170 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.076049 B = 0.005740 C = 0.005589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 368.094241 B = 4876.870064 C = 5008.989337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.434 3.566 3 O -0.528 6.528 4 C -0.352 4.352 5 C 0.093 3.907 6 N -0.339 5.339 7 N -0.353 5.353 8 C 0.136 3.864 9 C 0.027 3.973 10 C -0.548 4.548 11 H 0.076 0.924 12 C 0.001 3.999 13 N -0.932 5.932 14 Si 0.973 3.027 15 H -0.262 1.262 16 H -0.286 1.286 17 H -0.264 1.264 18 C 0.117 3.883 19 H 0.102 0.898 20 H 0.101 0.899 21 H 0.105 0.895 22 H 0.230 0.770 23 H 0.115 0.885 24 H 0.088 0.912 25 H -0.002 1.002 26 H -0.012 1.012 27 H 0.265 0.735 28 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.463 8.887 -6.837 14.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.317 3.683 3 O -0.409 6.409 4 C -0.365 4.365 5 C -0.094 4.094 6 N -0.158 5.158 7 N -0.129 5.129 8 C 0.017 3.983 9 C -0.011 4.011 10 C -0.586 4.586 11 H 0.094 0.906 12 C -0.197 4.197 13 N -0.572 5.572 14 Si 0.797 3.203 15 H -0.187 1.187 16 H -0.212 1.212 17 H -0.189 1.189 18 C -0.037 4.037 19 H 0.120 0.880 20 H 0.120 0.880 21 H 0.124 0.876 22 H 0.246 0.754 23 H 0.133 0.867 24 H 0.106 0.894 25 H 0.016 0.984 26 H 0.007 0.993 27 H 0.074 0.926 28 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -7.716 7.970 -6.700 12.959 hybrid contribution 0.637 0.097 0.436 0.778 sum -7.079 8.067 -6.264 12.427 Atomic orbital electron populations 1.22131 0.90178 1.06352 1.05555 1.22009 0.92953 0.84994 0.68355 1.90506 1.73412 1.35285 1.41691 1.21250 0.92747 0.96645 1.25889 1.24815 1.00407 0.89020 0.95186 1.77199 0.89997 1.23202 1.25446 1.49072 1.07303 1.04541 1.51962 1.22159 0.76847 0.98090 1.01203 1.19101 0.96689 0.93472 0.91824 1.21479 0.99342 1.25255 1.12541 0.90568 1.26036 1.01857 0.97068 0.94771 1.70123 1.37302 1.34522 1.15225 0.85378 0.78687 0.78360 0.77897 1.18709 1.21202 1.18873 1.23784 0.98477 0.87142 0.94277 0.87958 0.88027 0.87647 0.75352 0.86703 0.89351 0.98385 0.99329 0.92613 0.78275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.72 10.28 71.23 0.73 -1.99 15 2 C 0.43 11.02 7.24 27.89 0.20 11.23 15 3 O -0.53 -17.14 17.65 -3.13 -0.06 -17.19 15 4 C -0.35 -10.13 6.11 -20.21 -0.12 -10.25 15 5 C 0.09 2.62 11.37 85.73 0.97 3.59 15 6 N -0.34 -12.84 12.32 -56.14 -0.69 -13.53 15 7 N -0.35 -13.14 3.64 -346.06 -1.26 -14.40 15 8 C 0.14 5.34 6.42 86.38 0.55 5.90 15 9 C 0.03 1.40 5.15 29.85 0.15 1.55 15 10 C -0.55 -29.76 9.11 25.60 0.23 -29.53 15 11 H 0.08 3.78 7.74 -2.91 -0.02 3.76 15 12 C 0.00 0.07 5.46 84.65 0.46 0.54 15 13 N -0.93 -56.49 13.29 21.45 0.28 -56.21 15 14 Si 0.97 42.84 29.54 68.60 2.03 44.87 15 15 H -0.26 -10.94 7.11 99.48 0.71 -10.23 15 16 H -0.29 -12.53 7.11 99.48 0.71 -11.82 15 17 H -0.26 -11.09 7.11 99.48 0.71 -10.38 15 18 C 0.12 3.70 11.25 84.39 0.95 4.65 15 19 H 0.10 1.03 6.47 -2.39 -0.02 1.02 15 20 H 0.10 1.31 8.14 -2.39 -0.02 1.29 15 21 H 0.11 1.26 8.14 -2.38 -0.02 1.24 15 22 H 0.23 3.99 7.09 -2.91 -0.02 3.97 15 23 H 0.11 3.84 8.06 -2.39 -0.02 3.82 15 24 H 0.09 3.30 8.14 -2.39 -0.02 3.28 15 25 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 15 26 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 15 27 H 0.27 15.12 8.31 -92.71 -0.77 14.35 15 28 H 0.20 5.30 8.06 -2.91 -0.02 5.27 15 Total: -1.00 -71.64 256.59 5.59 -66.05 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: 1.15 Total: 4.73 kcal Atomic # 6 Polarization: -18.45 SS G_CDS: 4.14 Total: -14.31 kcal Atomic # 7 Polarization: -82.47 SS G_CDS: -1.67 Total: -84.13 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -0.06 Total: -17.19 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -71.64 5.59 -66.05 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308194941.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.005 kcal (2) G-P(sol) polarization free energy of solvation -71.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds