Wall clock time and date at job start Mon Mar 30 2020 02:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09004 * 109.46874 * 2 1 4 4 C 1.50698 * 109.47203 * 239.99817 * 2 1 3 5 5 N 1.28013 * 119.99976 * 119.99980 * 4 2 1 6 6 N 1.40101 * 119.99748 * 179.97438 * 5 4 2 7 7 C 1.34848 * 126.84412 * 179.97438 * 6 5 4 8 8 N 1.30899 * 108.01175 * 179.97438 * 7 6 5 9 9 C 1.33251 * 109.85245 * 359.97438 * 8 7 6 10 10 N 1.30819 * 109.01532 * 0.27066 * 9 8 7 11 11 C 1.53001 * 109.47018 * 119.99696 * 2 1 3 12 12 C 1.50701 * 109.47002 * 295.00060 * 11 2 1 13 13 H 1.08003 * 120.00248 * 0.02562 * 12 11 2 14 14 C 1.37879 * 119.99832 * 180.02562 * 12 11 2 15 15 N 1.31509 * 119.99925 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99989 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47231 * 89.99660 * 16 14 12 18 18 H 1.48495 * 109.47285 * 209.99876 * 16 14 12 19 19 H 1.48510 * 109.47101 * 330.00128 * 16 14 12 20 20 H 1.08998 * 109.46912 * 60.00230 * 1 2 3 21 21 H 1.08996 * 109.47028 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.46797 * 300.00243 * 1 2 3 23 23 H 1.08003 * 119.99696 * 299.99772 * 4 2 1 24 24 H 1.08001 * 125.99503 * 359.94636 * 7 6 5 25 25 H 1.08002 * 125.48775 * 179.97438 * 9 8 7 26 26 H 1.09003 * 109.47212 * 54.99947 * 11 2 1 27 27 H 1.08991 * 109.47012 * 175.00090 * 11 2 1 28 28 H 0.97006 * 120.00193 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 7 2.7684 -0.0883 -2.0731 6 7 3.2359 -0.7490 -3.2167 7 6 4.0138 -0.2308 -4.1887 8 7 4.2286 -1.1674 -5.0775 9 6 3.6100 -2.2894 -4.7113 10 7 2.9841 -2.0817 -3.5815 11 6 2.0401 -0.7212 1.2493 12 6 1.6414 0.0572 2.4766 13 1 1.0800 0.9743 2.3757 14 6 1.9933 -0.4015 3.7283 15 7 2.6773 -1.5180 3.8512 16 14 1.4984 0.5629 5.2497 17 1 0.1715 0.0938 5.7233 18 1 2.5079 0.3537 6.3184 19 1 1.4224 2.0082 4.9165 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.7715 -1.7445 -1.4012 24 1 4.3927 0.7798 -4.2273 25 1 3.6194 -3.2188 -5.2613 26 1 1.6054 -1.7198 1.2953 27 1 3.1263 -0.7994 1.2057 28 1 2.9246 -1.8409 4.7318 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308280217.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:42 Heat of formation + Delta-G solvation = 115.138665 kcal Electronic energy + Delta-G solvation = -12728.203312 eV Core-core repulsion = 10395.965787 eV Total energy + Delta-G solvation = -2332.237525 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.87032 -37.24599 -34.59911 -32.36381 -31.19398 -30.38975 -27.14383 -24.85902 -23.18206 -21.86407 -21.07602 -19.01543 -18.02278 -16.40209 -15.67441 -15.49017 -14.63270 -14.15904 -13.70278 -13.38174 -12.98610 -12.29812 -12.07352 -11.75763 -11.29846 -11.00309 -10.98744 -10.71689 -10.52517 -10.15080 -9.84781 -9.80394 -9.73001 -9.24067 -9.03028 -8.47638 -6.11691 -4.15231 1.21910 1.98750 2.50380 2.95907 3.25949 3.33171 3.35514 4.32103 4.32895 4.43661 5.04609 5.19027 5.24760 5.47477 5.70348 5.86990 5.90908 6.18852 6.41759 6.49208 6.63357 6.74479 6.80218 7.45744 7.51832 7.69583 7.84450 8.18607 8.22814 8.89480 9.49420 10.99579 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.065042 B = 0.005774 C = 0.005621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.389139 B = 4848.415248 C = 4980.104706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.049 4.049 3 H 0.085 0.915 4 C 0.174 3.826 5 N -0.265 5.265 6 N -0.246 5.246 7 C 0.290 3.710 8 N -0.550 5.550 9 C 0.202 3.798 10 N -0.355 5.355 11 C 0.033 3.967 12 C -0.520 4.520 13 H 0.061 0.939 14 C 0.059 3.941 15 N -0.893 5.893 16 Si 0.895 3.105 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.273 1.273 20 H 0.037 0.963 21 H 0.054 0.946 22 H 0.080 0.920 23 H 0.128 0.872 24 H 0.222 0.778 25 H 0.218 0.782 26 H 0.025 0.975 27 H 0.020 0.980 28 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.125 1.589 -11.197 11.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.070 4.070 3 H 0.103 0.897 4 C -0.037 4.037 5 N -0.068 5.068 6 N -0.119 5.119 7 C -0.006 4.006 8 N -0.279 5.279 9 C -0.101 4.101 10 N -0.185 5.185 11 C -0.005 4.005 12 C -0.558 4.558 13 H 0.079 0.921 14 C -0.143 4.143 15 N -0.531 5.531 16 Si 0.722 3.278 17 H -0.206 1.206 18 H -0.212 1.212 19 H -0.198 1.198 20 H 0.056 0.944 21 H 0.073 0.927 22 H 0.099 0.901 23 H 0.145 0.855 24 H 0.239 0.761 25 H 0.234 0.766 26 H 0.043 0.957 27 H 0.038 0.962 28 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.806 1.795 -11.276 11.447 hybrid contribution -0.369 -0.200 1.014 1.097 sum -1.175 1.595 -10.262 10.452 Atomic orbital electron populations 1.21693 0.93386 1.02050 1.01594 1.20670 0.96241 1.00320 0.89781 0.89701 1.27312 0.85540 0.99293 0.91534 1.75357 1.17349 1.19393 0.94748 1.52102 1.36635 1.06374 1.16763 1.25923 0.91035 1.00446 0.83225 1.70701 1.27723 1.00447 1.29021 1.25877 0.93741 0.98315 0.92126 1.78001 1.26270 0.96333 1.17852 1.19158 0.96649 0.95824 0.88848 1.21095 1.35662 1.08657 0.90417 0.92065 1.25012 0.94996 0.95066 0.99243 1.69957 1.38289 1.21103 1.23793 0.86552 0.78282 0.80361 0.82584 1.20573 1.21222 1.19760 0.94354 0.92668 0.90119 0.85452 0.76130 0.76600 0.95657 0.96181 0.92797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 8.99 37.16 0.33 -1.77 15 2 C -0.05 -0.90 2.75 -91.77 -0.25 -1.15 15 3 H 0.08 1.59 8.11 -51.93 -0.42 1.17 15 4 C 0.17 3.05 9.52 -13.87 -0.13 2.92 15 5 N -0.27 -4.63 11.56 32.67 0.38 -4.25 15 6 N -0.25 -4.14 4.75 29.62 0.14 -3.99 15 7 C 0.29 4.06 12.95 -90.22 -1.17 2.89 15 8 N -0.55 -7.97 11.19 -15.69 -0.18 -8.14 15 9 C 0.20 2.82 13.03 -91.72 -1.19 1.63 15 10 N -0.36 -5.94 11.87 29.31 0.35 -5.59 15 11 C 0.03 0.79 4.43 -27.88 -0.12 0.67 15 12 C -0.52 -13.48 8.41 -34.44 -0.29 -13.77 15 13 H 0.06 1.51 7.06 -52.48 -0.37 1.14 15 14 C 0.06 1.59 5.46 -17.82 -0.10 1.49 15 15 N -0.89 -25.68 13.29 55.43 0.74 -24.95 15 16 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 15 17 H -0.28 -6.36 7.11 56.52 0.40 -5.95 15 18 H -0.29 -6.63 7.11 56.52 0.40 -6.23 15 19 H -0.27 -6.14 7.11 56.52 0.40 -5.74 15 20 H 0.04 0.54 8.14 -51.93 -0.42 0.12 15 21 H 0.05 0.87 8.14 -51.93 -0.42 0.44 15 22 H 0.08 1.38 6.95 -51.93 -0.36 1.02 15 23 H 0.13 2.21 7.51 -52.48 -0.39 1.81 15 24 H 0.22 2.15 8.06 -52.49 -0.42 1.73 15 25 H 0.22 2.06 8.06 -52.49 -0.42 1.64 15 26 H 0.03 0.63 8.14 -51.93 -0.42 0.20 15 27 H 0.02 0.52 8.14 -51.93 -0.42 0.09 15 28 H 0.26 7.16 8.31 -40.82 -0.34 6.82 15 LS Contribution 255.66 15.07 3.85 3.85 Total: -1.00 -30.44 255.66 -5.88 -36.32 By element: Atomic # 1 Polarization: 1.47 SS G_CDS: -3.22 Total: -1.74 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: -2.92 Total: -7.10 kcal Atomic # 7 Polarization: -48.35 SS G_CDS: 1.43 Total: -46.93 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -30.44 -5.88 -36.32 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308280217.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.459 kcal (2) G-P(sol) polarization free energy of solvation -30.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds