Wall clock time and date at job start Mon Mar 30 2020 02:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09004 * 109.46874 * 2 1 4 4 C 1.50698 * 109.47203 * 239.99817 * 2 1 3 5 5 N 1.28013 * 119.99976 * 119.99980 * 4 2 1 6 6 N 1.40101 * 119.99748 * 179.97438 * 5 4 2 7 7 C 1.34848 * 126.84412 * 179.97438 * 6 5 4 8 8 N 1.30899 * 108.01175 * 179.97438 * 7 6 5 9 9 C 1.33251 * 109.85245 * 359.97438 * 8 7 6 10 10 N 1.30819 * 109.01532 * 0.27066 * 9 8 7 11 11 C 1.53001 * 109.47018 * 119.99696 * 2 1 3 12 12 C 1.50701 * 109.47002 * 295.00060 * 11 2 1 13 13 H 1.08003 * 120.00248 * 0.02562 * 12 11 2 14 14 C 1.37879 * 119.99832 * 180.02562 * 12 11 2 15 15 N 1.31509 * 119.99925 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99989 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47231 * 89.99660 * 16 14 12 18 18 H 1.48495 * 109.47285 * 209.99876 * 16 14 12 19 19 H 1.48510 * 109.47101 * 330.00128 * 16 14 12 20 20 H 1.08998 * 109.46912 * 60.00230 * 1 2 3 21 21 H 1.08996 * 109.47028 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.46797 * 300.00243 * 1 2 3 23 23 H 1.08003 * 119.99696 * 299.99772 * 4 2 1 24 24 H 1.08001 * 125.99503 * 359.94636 * 7 6 5 25 25 H 1.08002 * 125.48775 * 179.97438 * 9 8 7 26 26 H 1.09003 * 109.47212 * 54.99947 * 11 2 1 27 27 H 1.08991 * 109.47012 * 175.00090 * 11 2 1 28 28 H 0.97006 * 120.00193 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 7 2.7684 -0.0883 -2.0731 6 7 3.2359 -0.7490 -3.2167 7 6 4.0138 -0.2308 -4.1887 8 7 4.2286 -1.1674 -5.0775 9 6 3.6100 -2.2894 -4.7113 10 7 2.9841 -2.0817 -3.5815 11 6 2.0401 -0.7212 1.2493 12 6 1.6414 0.0572 2.4766 13 1 1.0800 0.9743 2.3757 14 6 1.9933 -0.4015 3.7283 15 7 2.6773 -1.5180 3.8512 16 14 1.4984 0.5629 5.2497 17 1 0.1715 0.0938 5.7233 18 1 2.5079 0.3537 6.3184 19 1 1.4224 2.0082 4.9165 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.7715 -1.7445 -1.4012 24 1 4.3927 0.7798 -4.2273 25 1 3.6194 -3.2188 -5.2613 26 1 1.6054 -1.7198 1.2953 27 1 3.1263 -0.7994 1.2057 28 1 2.9246 -1.8409 4.7318 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308280217.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:42 Heat of formation + Delta-G solvation = 98.126477 kcal Electronic energy + Delta-G solvation = -12728.941015 eV Core-core repulsion = 10395.965787 eV Total energy + Delta-G solvation = -2332.975229 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.02035 -38.66780 -36.17127 -34.21489 -32.35360 -31.73030 -28.93675 -26.32194 -24.78253 -23.00016 -22.50134 -20.47834 -19.34634 -18.34051 -16.88534 -16.67134 -16.49172 -15.32185 -15.10003 -14.95034 -14.56782 -13.88852 -13.42242 -13.32041 -12.83286 -12.75679 -12.56364 -12.27479 -12.12457 -11.73579 -11.43659 -11.26082 -10.98545 -10.96443 -10.54463 -10.38068 -8.17816 -6.27429 -0.01581 0.77497 1.23089 1.45443 1.46060 1.56568 1.86502 2.44011 3.17605 3.17906 3.37030 3.75897 3.99627 4.24269 4.32812 4.43574 4.65782 4.81318 5.11197 5.15837 5.32820 5.42413 5.46221 5.46873 5.65916 5.82501 6.20800 6.43500 6.87439 7.01227 7.41680 8.94376 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.065042 B = 0.005774 C = 0.005621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.389139 B = 4848.415248 C = 4980.104706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.035 4.035 3 H 0.085 0.915 4 C 0.171 3.829 5 N -0.264 5.264 6 N -0.268 5.268 7 C 0.296 3.704 8 N -0.560 5.560 9 C 0.212 3.788 10 N -0.393 5.393 11 C 0.039 3.961 12 C -0.527 4.527 13 H 0.073 0.927 14 C 0.000 4.000 15 N -0.935 5.935 16 Si 0.962 3.038 17 H -0.272 1.272 18 H -0.290 1.290 19 H -0.260 1.260 20 H 0.065 0.935 21 H 0.057 0.943 22 H 0.072 0.928 23 H 0.127 0.873 24 H 0.259 0.741 25 H 0.255 0.745 26 H 0.005 0.995 27 H -0.013 1.013 28 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.611 2.659 -12.114 12.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.056 4.056 3 H 0.104 0.896 4 C -0.040 4.040 5 N -0.067 5.067 6 N -0.141 5.141 7 C 0.001 3.999 8 N -0.289 5.289 9 C -0.091 4.091 10 N -0.222 5.222 11 C 0.000 4.000 12 C -0.565 4.565 13 H 0.092 0.908 14 C -0.198 4.198 15 N -0.576 5.576 16 Si 0.787 3.213 17 H -0.198 1.198 18 H -0.216 1.216 19 H -0.184 1.184 20 H 0.084 0.916 21 H 0.076 0.924 22 H 0.091 0.909 23 H 0.144 0.856 24 H 0.274 0.726 25 H 0.271 0.729 26 H 0.024 0.976 27 H 0.005 0.995 28 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.302 2.878 -12.213 12.615 hybrid contribution -0.134 -0.558 1.142 1.279 sum -1.436 2.320 -11.071 11.402 Atomic orbital electron populations 1.21642 0.91441 1.02561 1.02523 1.20361 0.97773 0.99437 0.88069 0.89635 1.27001 0.86338 0.99112 0.91591 1.75171 1.16382 1.20124 0.95018 1.52132 1.37993 1.06899 1.17080 1.26811 0.89386 1.01713 0.81947 1.70796 1.28085 1.00817 1.29184 1.26707 0.91817 0.99346 0.91194 1.77992 1.28115 0.96651 1.19419 1.18980 0.94471 0.95351 0.91171 1.21558 1.34837 1.08938 0.91196 0.90839 1.25928 0.95117 0.96003 1.02714 1.70100 1.40037 1.23032 1.24417 0.85481 0.77881 0.79424 0.78481 1.19772 1.21564 1.18441 0.91592 0.92432 0.90905 0.85591 0.72552 0.72892 0.97633 0.99492 0.92920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.86 8.99 71.99 0.65 -3.22 15 2 C -0.03 -1.29 2.75 -11.54 -0.03 -1.32 15 3 H 0.09 3.13 8.11 -2.38 -0.02 3.11 15 4 C 0.17 5.96 9.52 88.66 0.84 6.80 15 5 N -0.26 -9.00 11.56 -50.46 -0.58 -9.58 15 6 N -0.27 -8.65 4.75 -60.20 -0.29 -8.93 15 7 C 0.30 7.66 12.95 180.21 2.33 10.00 15 8 N -0.56 -14.95 11.19 -203.56 -2.28 -17.23 15 9 C 0.21 5.47 13.03 180.73 2.35 7.83 15 10 N -0.39 -12.69 11.87 -61.18 -0.73 -13.42 15 11 C 0.04 1.87 4.43 29.85 0.13 2.00 15 12 C -0.53 -27.41 8.41 25.60 0.22 -27.20 15 13 H 0.07 3.56 7.06 -2.91 -0.02 3.54 15 14 C 0.00 0.01 5.46 84.66 0.46 0.47 15 15 N -0.94 -55.00 13.29 21.45 0.28 -54.72 15 16 Si 0.96 42.17 29.54 68.60 2.03 44.19 15 17 H -0.27 -11.53 7.11 99.48 0.71 -10.82 15 18 H -0.29 -12.75 7.11 99.48 0.71 -12.04 15 19 H -0.26 -10.79 7.11 99.48 0.71 -10.08 15 20 H 0.07 1.71 8.14 -2.39 -0.02 1.69 15 21 H 0.06 1.76 8.14 -2.39 -0.02 1.74 15 22 H 0.07 2.39 6.95 -2.39 -0.02 2.37 15 23 H 0.13 4.40 7.51 -2.91 -0.02 4.38 15 24 H 0.26 4.24 8.06 -2.91 -0.02 4.22 15 25 H 0.26 4.10 8.06 -2.91 -0.02 4.08 15 26 H 0.01 0.27 8.14 -2.39 -0.02 0.26 15 27 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 15 28 H 0.26 14.61 8.31 -92.70 -0.77 13.84 15 Total: -1.00 -65.33 255.66 6.54 -58.78 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: 1.15 Total: 5.54 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: 6.96 Total: -4.64 kcal Atomic # 7 Polarization: -100.29 SS G_CDS: -3.59 Total: -103.88 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.19 kcal Total: -65.33 6.54 -58.78 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308280217.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.910 kcal (2) G-P(sol) polarization free energy of solvation -65.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds