Wall clock time and date at job start Mon Mar 30 2020 02:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.37092 * 120.00575 * 2 1 4 4 H 1.08003 * 120.00381 * 202.40186 * 3 2 1 5 5 C 1.38950 * 120.00213 * 22.39884 * 3 2 1 6 6 N 1.31415 * 119.99485 * 11.61224 * 5 3 2 7 7 Si 1.86794 * 120.00518 * 191.61186 * 5 3 2 8 8 H 1.48495 * 109.47014 * 359.97438 * 7 5 3 9 9 H 1.48500 * 109.47155 * 120.00194 * 7 5 3 10 10 H 1.48504 * 109.47027 * 240.00148 * 7 5 3 11 11 C 1.34780 * 119.99738 * 179.97438 * 2 1 3 12 12 O 1.21297 * 120.00336 * 180.02562 * 11 2 1 13 13 C 1.50702 * 120.00238 * 359.97438 * 11 2 1 14 14 C 1.52994 * 109.47432 * 179.97438 * 13 11 2 15 15 C 1.47199 * 115.56533 * 325.69232 * 14 13 11 16 16 N 4.68301 * 131.82478 * 202.33234 * 2 1 3 17 17 C 1.52996 * 117.49943 * 179.97438 * 14 13 11 18 18 C 1.52995 * 60.03492 * 252.50489 * 17 14 13 19 19 H 1.08995 * 109.47246 * 272.16216 * 1 2 3 20 20 H 1.09010 * 109.46970 * 32.15655 * 1 2 3 21 21 H 1.09000 * 109.47381 * 152.15311 * 1 2 3 22 22 H 0.96999 * 119.99864 * 179.97438 * 6 5 3 23 23 H 1.09006 * 109.46851 * 60.00058 * 13 11 2 24 24 H 1.09003 * 109.46985 * 300.00747 * 13 11 2 25 25 H 1.09003 * 117.49795 * 0.02562 * 17 14 13 26 26 H 1.09002 * 117.50345 * 144.99654 * 17 14 13 27 27 H 1.08996 * 117.50444 * 107.50637 * 18 17 14 28 28 H 1.09003 * 117.49536 * 252.52496 * 18 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1694 1.2224 -0.3564 5 6 1.5345 2.3452 0.4585 6 7 0.3898 2.2708 1.0996 7 14 2.3336 4.0077 0.1638 8 1 3.6081 3.8204 -0.5747 9 1 1.4187 4.8620 -0.6352 10 1 2.6094 4.6625 1.4679 11 6 2.1388 -1.1673 0.0005 12 8 3.3518 -1.1674 0.0010 13 6 1.3853 -2.4724 0.0017 14 6 2.3794 -3.6353 0.0014 15 6 3.6253 -3.4058 -0.7481 16 7 4.5878 -3.2280 -1.3260 17 6 1.8069 -5.0541 0.0031 18 6 2.4638 -4.4936 1.2661 19 1 -0.3633 0.0388 1.0269 20 1 -0.3633 0.8701 -0.5470 21 1 -0.3634 -0.9086 -0.4800 22 1 -0.0401 3.0791 1.4200 23 1 0.7583 -2.5307 -0.8881 24 1 0.7588 -2.5294 0.8919 25 1 0.7219 -5.1590 0.0040 26 1 2.3523 -5.8177 -0.5515 27 1 1.8111 -4.2299 2.0983 28 1 3.4417 -4.8881 1.5422 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000378860131.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:28 Heat of formation + Delta-G solvation = 28.936200 kcal Electronic energy + Delta-G solvation = -13385.165756 eV Core-core repulsion = 11016.897461 eV Total energy + Delta-G solvation = -2368.268295 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.16973 -37.39085 -34.88203 -34.57516 -31.68484 -29.16973 -26.19154 -24.43664 -22.73837 -22.45557 -19.33130 -16.93945 -16.67441 -15.88378 -14.85506 -14.52231 -14.44875 -13.89808 -13.27752 -12.94815 -12.50718 -12.18457 -12.07804 -11.60296 -11.50258 -11.27514 -11.18218 -11.12905 -10.88804 -10.47530 -10.30546 -10.20546 -9.75679 -9.04205 -8.35666 -7.69240 -6.32499 -3.88481 3.11796 3.15075 3.25572 3.33393 3.51439 3.86692 4.10114 4.16539 4.35312 4.55109 4.95380 5.08509 5.16301 5.31792 5.60155 5.74157 5.86581 5.92186 5.97109 6.08846 6.10801 6.35510 6.85775 7.20179 7.56722 8.11979 8.38283 8.47559 9.18190 9.41345 9.95724 10.71232 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.050379 B = 0.008817 C = 0.007883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.650834 B = 3174.996987 C = 3551.013412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.445 5.445 3 C -0.303 4.303 4 H 0.098 0.902 5 C 0.030 3.970 6 N -0.884 5.884 7 Si 0.925 3.075 8 H -0.268 1.268 9 H -0.281 1.281 10 H -0.281 1.281 11 C 0.439 3.561 12 O -0.578 6.578 13 C -0.091 4.091 14 C -0.023 4.023 15 C 0.265 3.735 16 N -0.442 5.442 17 C -0.154 4.154 18 C -0.148 4.148 19 H 0.059 0.941 20 H 0.068 0.932 21 H 0.027 0.973 22 H 0.266 0.734 23 H 0.090 0.910 24 H 0.097 0.903 25 H 0.111 0.889 26 H 0.100 0.900 27 H 0.111 0.889 28 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.182 -9.956 0.432 11.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.164 5.164 3 C -0.431 4.431 4 H 0.116 0.884 5 C -0.173 4.173 6 N -0.524 5.524 7 Si 0.752 3.248 8 H -0.193 1.193 9 H -0.206 1.206 10 H -0.207 1.207 11 C 0.227 3.773 12 O -0.461 6.461 13 C -0.133 4.133 14 C -0.027 4.027 15 C -0.052 4.052 16 N -0.119 5.119 17 C -0.192 4.192 18 C -0.186 4.186 19 H 0.077 0.923 20 H 0.087 0.913 21 H 0.046 0.954 22 H 0.077 0.923 23 H 0.108 0.892 24 H 0.115 0.885 25 H 0.129 0.871 26 H 0.118 0.882 27 H 0.129 0.871 28 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.276 -9.491 -0.368 10.047 hybrid contribution -0.300 1.067 0.249 1.136 sum -3.575 -8.424 -0.119 9.152 Atomic orbital electron populations 1.21534 0.81058 0.98898 1.01786 1.43564 1.05540 1.04727 1.62554 1.19707 0.99460 0.83804 1.40171 0.88423 1.25323 0.96502 1.00042 0.95390 1.69999 1.17402 1.29161 1.35829 0.85869 0.79310 0.81433 0.78171 1.19266 1.20647 1.20716 1.19955 0.88199 0.84868 0.84274 1.90550 1.13827 1.86102 1.55654 1.21186 0.96605 0.91490 1.03970 1.17946 0.90516 0.93409 1.00802 1.27018 0.93095 0.91874 0.93170 1.81053 1.11126 1.09480 1.10291 1.23182 1.01451 0.93466 1.01083 1.23202 1.03084 1.00965 0.91360 0.92262 0.91283 0.95405 0.92332 0.89195 0.88466 0.87071 0.88163 0.87084 0.88200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.37 8.52 59.84 0.51 2.88 15 2 N -0.45 -11.26 3.02 -122.19 -0.37 -11.63 15 3 C -0.30 -8.54 9.29 -14.94 -0.14 -8.68 15 4 H 0.10 2.94 7.41 -52.48 -0.39 2.55 15 5 C 0.03 0.80 5.11 -17.47 -0.09 0.71 15 6 N -0.88 -23.36 10.62 55.50 0.59 -22.77 15 7 Si 0.93 21.06 29.57 -169.99 -5.03 16.04 15 8 H -0.27 -6.21 7.11 56.52 0.40 -5.80 15 9 H -0.28 -6.20 7.11 56.52 0.40 -5.80 15 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 15 11 C 0.44 10.44 7.45 -10.98 -0.08 10.35 15 12 O -0.58 -16.00 13.25 5.54 0.07 -15.92 15 13 C -0.09 -1.51 4.40 -27.88 -0.12 -1.63 15 14 C -0.02 -0.35 2.26 -157.26 -0.36 -0.71 15 15 C 0.26 5.31 12.05 -20.74 -0.25 5.06 15 16 N -0.44 -10.06 18.35 42.18 0.77 -9.29 15 17 C -0.15 -1.56 9.93 -26.74 -0.27 -1.83 15 18 C -0.15 -1.73 9.86 -26.69 -0.26 -1.99 15 19 H 0.06 1.30 7.54 -51.93 -0.39 0.91 15 20 H 0.07 1.58 7.06 -51.92 -0.37 1.21 15 21 H 0.03 0.47 6.36 -51.93 -0.33 0.14 15 22 H 0.27 6.66 8.31 -40.82 -0.34 6.32 15 23 H 0.09 1.29 7.40 -51.93 -0.38 0.91 15 24 H 0.10 1.36 7.87 -51.93 -0.41 0.95 15 25 H 0.11 0.85 8.14 -51.93 -0.42 0.43 15 26 H 0.10 0.94 8.14 -51.93 -0.42 0.51 15 27 H 0.11 1.12 8.05 -51.93 -0.42 0.70 15 28 H 0.10 1.15 8.14 -51.93 -0.42 0.72 15 LS Contribution 249.42 15.07 3.76 3.76 Total: -1.00 -33.49 249.42 -4.35 -37.84 By element: Atomic # 1 Polarization: 0.89 SS G_CDS: -3.09 Total: -2.20 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: -1.06 Total: 4.17 kcal Atomic # 7 Polarization: -44.68 SS G_CDS: 0.99 Total: -43.69 kcal Atomic # 8 Polarization: -16.00 SS G_CDS: 0.07 Total: -15.92 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.04 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -33.49 -4.35 -37.84 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378860131.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.775 kcal (2) G-P(sol) polarization free energy of solvation -33.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds