Wall clock time and date at job start Mon Mar 30 2020 02:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.37092 * 120.00575 * 2 1 4 4 H 1.08003 * 120.00381 * 202.40186 * 3 2 1 5 5 C 1.38950 * 120.00213 * 22.39884 * 3 2 1 6 6 N 1.31415 * 119.99485 * 11.61224 * 5 3 2 7 7 Si 1.86794 * 120.00518 * 191.61186 * 5 3 2 8 8 H 1.48495 * 109.47014 * 359.97438 * 7 5 3 9 9 H 1.48500 * 109.47155 * 120.00194 * 7 5 3 10 10 H 1.48504 * 109.47027 * 240.00148 * 7 5 3 11 11 C 1.34780 * 119.99738 * 179.97438 * 2 1 3 12 12 O 1.21297 * 120.00336 * 180.02562 * 11 2 1 13 13 C 1.50702 * 120.00238 * 359.97438 * 11 2 1 14 14 C 1.52994 * 109.47432 * 179.97438 * 13 11 2 15 15 C 1.47199 * 115.56533 * 325.69232 * 14 13 11 16 16 N 4.68301 * 131.82478 * 202.33234 * 2 1 3 17 17 C 1.52996 * 117.49943 * 179.97438 * 14 13 11 18 18 C 1.52995 * 60.03492 * 252.50489 * 17 14 13 19 19 H 1.08995 * 109.47246 * 272.16216 * 1 2 3 20 20 H 1.09010 * 109.46970 * 32.15655 * 1 2 3 21 21 H 1.09000 * 109.47381 * 152.15311 * 1 2 3 22 22 H 0.96999 * 119.99864 * 179.97438 * 6 5 3 23 23 H 1.09006 * 109.46851 * 60.00058 * 13 11 2 24 24 H 1.09003 * 109.46985 * 300.00747 * 13 11 2 25 25 H 1.09003 * 117.49795 * 0.02562 * 17 14 13 26 26 H 1.09002 * 117.50345 * 144.99654 * 17 14 13 27 27 H 1.08996 * 117.50444 * 107.50637 * 18 17 14 28 28 H 1.09003 * 117.49536 * 252.52496 * 18 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1694 1.2224 -0.3564 5 6 1.5345 2.3452 0.4585 6 7 0.3898 2.2708 1.0996 7 14 2.3336 4.0077 0.1638 8 1 3.6081 3.8204 -0.5747 9 1 1.4187 4.8620 -0.6352 10 1 2.6094 4.6625 1.4679 11 6 2.1388 -1.1673 0.0005 12 8 3.3518 -1.1674 0.0010 13 6 1.3853 -2.4724 0.0017 14 6 2.3794 -3.6353 0.0014 15 6 3.6253 -3.4058 -0.7481 16 7 4.5878 -3.2280 -1.3260 17 6 1.8069 -5.0541 0.0031 18 6 2.4638 -4.4936 1.2661 19 1 -0.3633 0.0388 1.0269 20 1 -0.3633 0.8701 -0.5470 21 1 -0.3634 -0.9086 -0.4800 22 1 -0.0401 3.0791 1.4200 23 1 0.7583 -2.5307 -0.8881 24 1 0.7588 -2.5294 0.8919 25 1 0.7219 -5.1590 0.0040 26 1 2.3523 -5.8177 -0.5515 27 1 1.8111 -4.2299 2.0983 28 1 3.4417 -4.8881 1.5422 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000378860131.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:28 Heat of formation + Delta-G solvation = 5.941413 kcal Electronic energy + Delta-G solvation = -13386.162885 eV Core-core repulsion = 11016.897461 eV Total energy + Delta-G solvation = -2369.265424 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.72627 -38.81151 -36.58777 -36.30456 -33.66806 -30.58763 -27.99300 -26.25250 -24.09178 -23.26333 -21.06545 -18.88625 -18.08648 -17.61100 -16.42642 -16.22526 -15.87580 -15.53464 -14.67068 -14.52625 -14.13753 -13.76304 -13.61626 -13.28418 -13.05066 -12.94725 -12.75046 -12.59038 -12.24714 -12.19115 -12.15448 -11.42695 -11.01833 -10.85406 -10.22332 -9.65372 -8.33500 -5.97745 1.32482 1.37684 1.50672 1.84994 2.03754 2.08809 2.26389 2.97248 3.01050 3.10294 3.32265 3.72048 3.98441 4.08260 4.46048 4.66687 4.73425 4.85607 4.87610 4.98703 5.12110 5.13620 5.34904 5.43963 5.47646 6.10186 6.50113 6.91572 7.19285 7.51535 8.07196 8.67604 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.050379 B = 0.008817 C = 0.007883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.650834 B = 3174.996987 C = 3551.013412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.119 3.881 2 N -0.466 5.466 3 C -0.343 4.343 4 H 0.059 0.941 5 C 0.002 3.998 6 N -0.892 5.892 7 Si 0.982 3.018 8 H -0.283 1.283 9 H -0.263 1.263 10 H -0.273 1.273 11 C 0.426 3.574 12 O -0.629 6.629 13 C -0.075 4.075 14 C -0.072 4.072 15 C 0.278 3.722 16 N -0.514 5.514 17 C -0.106 4.106 18 C -0.141 4.141 19 H 0.051 0.949 20 H 0.046 0.954 21 H 0.080 0.920 22 H 0.273 0.727 23 H 0.118 0.882 24 H 0.133 0.867 25 H 0.152 0.848 26 H 0.109 0.891 27 H 0.134 0.866 28 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.680 -11.392 1.086 13.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.184 5.184 3 C -0.471 4.471 4 H 0.077 0.923 5 C -0.200 4.200 6 N -0.531 5.531 7 Si 0.806 3.194 8 H -0.208 1.208 9 H -0.187 1.187 10 H -0.199 1.199 11 C 0.216 3.784 12 O -0.516 6.516 13 C -0.116 4.116 14 C -0.076 4.076 15 C -0.036 4.036 16 N -0.193 5.193 17 C -0.143 4.143 18 C -0.180 4.180 19 H 0.070 0.930 20 H 0.065 0.935 21 H 0.098 0.902 22 H 0.083 0.917 23 H 0.136 0.864 24 H 0.151 0.849 25 H 0.170 0.830 26 H 0.127 0.873 27 H 0.152 0.848 28 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -5.819 -10.940 0.293 12.394 hybrid contribution 0.484 1.471 0.081 1.551 sum -5.335 -9.468 0.374 10.874 Atomic orbital electron populations 1.21523 0.78775 1.00514 1.01537 1.43858 1.07044 1.04487 1.63051 1.19502 0.98800 0.86345 1.42456 0.92327 1.25933 0.97029 1.02353 0.94699 1.70044 1.17592 1.30213 1.35245 0.85054 0.78115 0.77945 0.78267 1.20818 1.18742 1.19876 1.21325 0.88171 0.86872 0.82010 1.90526 1.16544 1.87328 1.57180 1.21195 0.96420 0.87066 1.06903 1.18349 0.89222 0.96020 1.04041 1.28136 0.93554 0.89991 0.91945 1.81030 1.13596 1.11646 1.13048 1.23428 1.03661 0.88912 0.98325 1.23422 1.03832 0.99069 0.91649 0.93016 0.93484 0.90208 0.91685 0.86372 0.84902 0.83047 0.87268 0.84768 0.88688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.89 8.52 127.77 1.09 5.98 15 2 N -0.47 -23.64 3.02 -658.89 -1.99 -25.63 15 3 C -0.34 -19.94 9.29 84.04 0.78 -19.16 15 4 H 0.06 3.78 7.41 -2.91 -0.02 3.75 15 5 C 0.00 0.10 5.11 84.93 0.43 0.53 15 6 N -0.89 -46.69 10.62 21.66 0.23 -46.46 15 7 Si 0.98 43.65 29.57 68.60 2.03 45.68 15 8 H -0.28 -13.14 7.11 99.48 0.71 -12.43 15 9 H -0.26 -10.88 7.11 99.48 0.71 -10.17 15 10 H -0.27 -11.76 7.11 99.48 0.71 -11.05 15 11 C 0.43 20.17 7.45 87.66 0.65 20.83 15 12 O -0.63 -36.07 13.25 -3.08 -0.04 -36.11 15 13 C -0.08 -2.23 4.40 29.85 0.13 -2.10 15 14 C -0.07 -2.01 2.26 -53.96 -0.12 -2.13 15 15 C 0.28 11.20 12.05 89.43 1.08 12.28 15 16 N -0.51 -24.34 18.35 20.01 0.37 -23.97 15 17 C -0.11 -1.58 9.93 30.59 0.30 -1.28 15 18 C -0.14 -2.76 9.86 30.62 0.30 -2.45 15 19 H 0.05 2.17 7.54 -2.39 -0.02 2.16 15 20 H 0.05 2.10 7.06 -2.38 -0.02 2.09 15 21 H 0.08 2.38 6.36 -2.39 -0.02 2.37 15 22 H 0.27 13.36 8.31 -92.71 -0.77 12.59 15 23 H 0.12 2.82 7.40 -2.38 -0.02 2.80 15 24 H 0.13 3.01 7.87 -2.39 -0.02 2.99 15 25 H 0.15 1.15 8.14 -2.39 -0.02 1.13 15 26 H 0.11 1.51 8.14 -2.39 -0.02 1.49 15 27 H 0.13 2.01 8.05 -2.39 -0.02 1.99 15 28 H 0.09 1.95 8.14 -2.39 -0.02 1.93 15 Total: -1.00 -78.77 249.42 6.41 -72.36 By element: Atomic # 1 Polarization: 0.48 SS G_CDS: 1.17 Total: 1.64 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: 4.65 Total: 12.49 kcal Atomic # 7 Polarization: -94.67 SS G_CDS: -1.39 Total: -96.06 kcal Atomic # 8 Polarization: -36.07 SS G_CDS: -0.04 Total: -36.11 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -78.77 6.41 -72.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000378860131.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.304 kcal (2) G-P(sol) polarization free energy of solvation -78.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds