Wall clock time and date at job start Mon Mar 30 2020 02:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 119.99987 * 2 1 4 4 H 1.48503 * 109.46907 * 240.00503 * 3 2 1 5 5 H 1.48497 * 109.47283 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47190 * 120.00354 * 3 2 1 7 7 C 1.37881 * 120.00186 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99863 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99703 * 359.97438 * 7 2 1 10 10 N 1.46900 * 109.46849 * 180.02562 * 9 7 2 11 11 C 1.46898 * 110.99826 * 180.02562 * 10 9 7 12 12 C 1.50702 * 109.47182 * 180.02562 * 11 10 9 13 13 C 1.40067 * 120.23873 * 89.99948 * 12 11 10 14 14 N 1.31390 * 120.25244 * 180.02562 * 13 12 11 15 15 C 1.34338 * 120.77241 * 0.02562 * 14 13 12 16 16 N 1.31436 * 119.76934 * 180.02562 * 15 14 13 17 17 N 1.37501 * 120.45972 * 0.27464 * 15 14 13 18 18 H 0.97006 * 120.13113 * 179.73081 * 17 15 14 19 19 C 1.35709 * 120.23854 * 270.02063 * 12 11 10 20 20 H 0.97005 * 120.00473 * 359.97438 * 1 2 3 21 21 H 1.09003 * 109.46879 * 60.01115 * 9 7 2 22 22 H 1.08998 * 109.47303 * 300.00453 * 9 7 2 23 23 H 1.00898 * 110.99996 * 56.05097 * 10 9 7 24 24 H 1.08995 * 109.47420 * 60.00121 * 11 10 9 25 25 H 1.08999 * 109.47238 * 300.00095 * 11 10 9 26 26 H 1.07999 * 119.87507 * 359.97438 * 13 12 11 27 27 H 0.97001 * 119.99709 * 359.97438 * 16 15 14 28 28 H 1.08004 * 120.37254 * 0.02562 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5053 -4.9070 -0.0011 12 6 2.5148 -6.0259 -0.0005 13 6 2.9865 -6.5498 1.2099 14 7 3.8670 -7.5250 1.2108 15 6 4.3292 -8.0347 0.0570 16 7 5.2095 -9.0104 0.0809 17 7 3.8916 -7.5393 -1.1487 18 1 4.2315 -7.9083 -1.9790 19 6 2.9738 -6.5330 -1.1726 20 1 -0.4851 0.8400 0.0004 21 1 0.6241 -2.5567 -0.8904 22 1 0.6246 -2.5571 0.8896 23 1 2.8404 -3.5487 0.7809 24 1 0.8808 -4.9812 -0.8913 25 1 0.8801 -4.9817 0.8886 26 1 2.6256 -6.1500 2.1460 27 1 5.5234 -9.3597 0.9296 28 1 2.6200 -6.1389 -2.1139 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379358506.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:41 Heat of formation + Delta-G solvation = 40.169298 kcal Electronic energy + Delta-G solvation = -12701.782066 eV Core-core repulsion = 10366.293625 eV Total energy + Delta-G solvation = -2335.488441 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 208.102 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.84365 -37.43947 -35.52039 -35.35607 -34.14892 -31.39935 -28.48840 -26.02875 -25.38174 -23.62970 -23.01454 -19.20226 -18.97467 -18.29690 -17.77310 -16.69816 -16.17135 -15.93869 -15.54833 -14.97456 -14.81150 -14.31027 -13.67613 -13.11467 -13.00894 -12.62724 -12.51883 -12.41419 -12.03953 -11.56412 -11.26808 -11.00411 -10.62570 -10.59894 -9.04196 -8.64841 -8.17350 -6.27314 -0.17809 0.74598 1.45318 1.46957 1.54969 1.74555 2.43733 2.72903 3.16354 3.41634 3.74246 3.78270 3.90595 4.18097 4.54307 4.75582 4.86855 5.02968 5.15486 5.21024 5.37824 5.44427 5.67041 6.09580 6.14547 6.52422 6.79809 6.86411 6.96357 7.35001 7.43513 8.92952 Molecular weight = 208.10amu Principal moments of inertia in cm(-1) A = 0.066805 B = 0.005531 C = 0.005416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.030753 B = 5060.753931 C = 5168.294113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.965 3.035 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.269 1.269 7 C -0.534 4.534 8 H 0.062 0.938 9 C 0.207 3.793 10 N -0.686 5.686 11 C 0.124 3.876 12 C -0.269 4.269 13 C 0.257 3.743 14 N -0.593 5.593 15 C 0.525 3.475 16 N -0.805 5.805 17 N -0.599 5.599 18 H 0.436 0.564 19 C 0.231 3.769 20 H 0.264 0.736 21 H 0.008 0.992 22 H -0.035 1.035 23 H 0.333 0.667 24 H 0.083 0.917 25 H 0.037 0.963 26 H 0.180 0.820 27 H 0.349 0.651 28 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.314 -11.044 -2.082 11.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.194 4.194 3 Si 0.790 3.210 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.573 4.573 8 H 0.080 0.920 9 C 0.079 3.921 10 N -0.317 5.317 11 C -0.006 4.006 12 C -0.281 4.281 13 C 0.069 3.931 14 N -0.316 5.316 15 C 0.156 3.844 16 N -0.446 5.446 17 N -0.217 5.217 18 H 0.276 0.724 19 C 0.091 3.909 20 H 0.073 0.927 21 H 0.026 0.974 22 H -0.017 1.017 23 H 0.149 0.851 24 H 0.101 0.899 25 H 0.056 0.944 26 H 0.197 0.803 27 H 0.165 0.835 28 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 4.241 -12.034 -2.824 13.068 hybrid contribution -0.522 1.309 1.007 1.732 sum 3.719 -10.725 -1.816 11.496 Atomic orbital electron populations 1.70056 1.07582 1.27904 1.51701 1.25844 0.95697 1.03022 0.94881 0.85502 0.78183 0.78302 0.79009 1.19463 1.21056 1.19434 1.21553 0.93765 0.91713 1.50248 0.91995 1.19212 0.90620 0.88467 0.93771 1.60658 1.20329 1.01316 1.49352 1.20463 0.92658 0.85819 1.01698 1.19907 1.09540 1.05518 0.93127 1.23751 0.84534 0.85451 0.99326 1.69967 1.18482 1.17400 1.25781 1.20412 0.91308 0.91287 0.81437 1.69922 1.21130 1.17911 1.35644 1.42391 1.37526 1.32240 1.09586 0.72426 1.22824 0.83380 0.82797 1.01867 0.92721 0.97384 1.01692 0.85052 0.89877 0.94445 0.80265 0.83489 0.76930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.03 13.29 21.45 0.28 -53.75 15 2 C 0.00 0.22 5.46 84.66 0.46 0.68 15 3 Si 0.96 42.79 29.54 68.60 2.03 44.81 15 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 15 5 H -0.29 -12.42 7.11 99.48 0.71 -11.71 15 6 H -0.27 -11.53 7.11 99.48 0.71 -10.82 15 7 C -0.53 -28.78 9.32 25.60 0.24 -28.54 15 8 H 0.06 3.26 7.81 -2.91 -0.02 3.23 15 9 C 0.21 10.04 5.44 85.56 0.47 10.51 15 10 N -0.69 -25.12 6.48 -521.99 -3.38 -28.50 15 11 C 0.12 3.34 5.82 85.56 0.50 3.84 15 12 C -0.27 -5.99 5.37 -20.01 -0.11 -6.10 15 13 C 0.26 6.08 10.96 85.20 0.93 7.01 15 14 N -0.59 -16.66 10.47 -197.54 -2.07 -18.72 15 15 C 0.52 14.48 8.69 261.57 2.27 16.75 15 16 N -0.80 -24.04 14.19 -59.87 -0.85 -24.89 15 17 N -0.60 -11.77 5.42 -197.51 -1.07 -12.84 15 18 H 0.44 6.38 8.93 -92.70 -0.83 5.55 15 19 C 0.23 4.08 10.94 83.43 0.91 4.99 15 20 H 0.26 14.48 8.31 -92.70 -0.77 13.71 15 21 H 0.01 0.42 8.14 -2.39 -0.02 0.40 15 22 H -0.03 -1.81 8.14 -2.39 -0.02 -1.83 15 23 H 0.33 11.93 8.72 -89.70 -0.78 11.15 15 24 H 0.08 2.12 8.08 -2.39 -0.02 2.10 15 25 H 0.04 1.01 8.10 -2.39 -0.02 0.99 15 26 H 0.18 3.48 8.06 -2.91 -0.02 3.46 15 27 H 0.35 10.34 8.90 -92.71 -0.82 9.51 15 28 H 0.21 2.25 8.06 -2.91 -0.02 2.23 15 Total: -1.00 -67.05 253.95 -0.61 -67.66 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: -1.23 Total: 17.08 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: 5.68 Total: 9.14 kcal Atomic # 7 Polarization: -131.61 SS G_CDS: -7.08 Total: -138.70 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.81 kcal Total: -67.05 -0.61 -67.66 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379358506.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.829 kcal (2) G-P(sol) polarization free energy of solvation -67.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds